Experiment set15IT076 for Klebsiella michiganensis M5al

Compare to:

rhizosphere sample 1; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
BWI76_RS26395 -9.1 -3.5 cell division protein FtsE compare
BWI76_RS26390 -8.7 -4.8 cell division protein FtsX compare
BWI76_RS06525 -7.2 -3.8 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS20190 -7.1 -3.6 NADH-quinone oxidoreductase subunit A compare
BWI76_RS27170 -6.8 -4.7 MltR family transcriptional regulator compare
BWI76_RS01210 -6.1 -2.5 tyrosine recombinase XerC compare
BWI76_RS20160 -5.8 -2.7 NADH-quinone oxidoreductase subunit H compare
BWI76_RS26460 -5.7 -3.6 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS09645 -5.5 -1.3 thioredoxin-disulfide reductase compare
BWI76_RS17975 -5.4 -4.5 tail-specific protease compare
BWI76_RS20170 -5.3 -3.7 NADH-quinone oxidoreductase subunit F compare
BWI76_RS20135 -5.3 -3.4 NADH-quinone oxidoreductase subunit M compare
BWI76_RS06530 -5.3 -2.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS20150 -5.2 -2.1 NADH:ubiquinone oxidoreductase subunit J compare
BWI76_RS01325 -4.9 -2.0 twin-arginine translocase subunit TatB compare
BWI76_RS08720 -4.8 -2.0 imidazolonepropionase compare
BWI76_RS16965 -4.7 -1.6 murein lipoprotein compare
BWI76_RS17720 -4.7 -1.1 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS26245 -4.7 -3.5 transcriptional regulator compare
BWI76_RS27475 -4.6 -8.3 regulatory protein GntR family protein compare
BWI76_RS08210 -4.6 -1.6 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS20270 -4.5 -5.6 hypothetical protein compare
BWI76_RS22240 -4.4 -4.5 transcriptional regulator compare
BWI76_RS15975 -4.4 -1.0 hypothetical protein compare
BWI76_RS20130 -4.3 -4.7 NADH-quinone oxidoreductase subunit N compare
BWI76_RS20180 -4.2 -5.3 NADH-quinone oxidoreductase subunit C/D compare
BWI76_RS00865 -4.1 -2.9 DNA-binding transcriptional regulator OxyR compare
BWI76_RS27165 -4.0 -2.8 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS04510 -4.0 -1.6 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS19070 -4.0 -9.0 rhamnosyltransferase compare
BWI76_RS20155 -4.0 -1.6 NADH-quinone oxidoreductase subunit I compare
BWI76_RS04715 -4.0 -1.3 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS23265 -4.0 -2.2 hypothetical protein compare
BWI76_RS08520 -3.9 -1.6 colicin transporter TolQ compare
BWI76_RS20140 -3.9 -4.6 NADH-quinone oxidoreductase subunit L compare
BWI76_RS26190 -3.9 -5.0 glycerol-3-phosphate dehydrogenase compare
BWI76_RS02610 -3.8 -4.3 transcriptional regulator compare
BWI76_RS19055 -3.7 -8.6 dTDP-4-dehydrorhamnose 3,5-epimerase compare
BWI76_RS25280 -3.6 -1.2 RNase adaptor protein RapZ compare
BWI76_RS03595 -3.6 -1.2 ethanolamine utilization protein EutM compare
BWI76_RS19050 -3.6 -10.1 NAD(P)-dependent oxidoreductase compare
BWI76_RS25420 -3.5 -5.0 malate dehydrogenase compare
BWI76_RS26455 -3.4 -1.9 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS25335 -3.4 -2.0 stringent starvation protein A compare
BWI76_RS06730 -3.4 -1.5 lac repressor compare
BWI76_RS17980 -3.4 -5.0 RNA chaperone ProQ compare
BWI76_RS19040 -3.4 -4.1 hypothetical protein compare
BWI76_RS22420 -3.3 -1.9 LacI family transcriptional regulator compare
BWI76_RS19700 -3.2 -1.9 deoxyribonuclease IV compare
BWI76_RS08530 -3.2 -1.1 protein TolA compare
BWI76_RS01350 -3.1 -0.7 NAD(P)H-flavin reductase compare
BWI76_RS19035 -3.0 -4.6 dTDP-rhamnosyl transferase compare
BWI76_RS20165 -3.0 -4.0 NADH-quinone oxidoreductase subunit G compare
BWI76_RS08395 -3.0 -1.2 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS24850 -3.0 -4.7 DeoR family transcriptional regulator compare
BWI76_RS04160 -3.0 -3.9 phosphoserine phosphatase compare
BWI76_RS27235 -2.9 -10.2 murein hydrolase activator EnvC compare
BWI76_RS08205 -2.9 -3.4 DNA-binding transcriptional dual regulator NagC compare
BWI76_RS15825 -2.9 -1.3 hypothetical protein compare
BWI76_RS03880 -2.9 -2.1 homoprotocatechuate degradation operon regulator, HpaR compare
BWI76_RS24075 -2.9 -2.6 glutathione synthase compare
BWI76_RS08425 -2.9 -2.6 succinyl-CoA ligase subunit beta compare
BWI76_RS04255 -2.9 -6.6 threonine synthase compare
BWI76_RS16955 -2.8 -0.7 hypothetical protein compare
BWI76_RS26775 -2.8 -4.9 endo-1,4-D-glucanase compare
BWI76_RS21100 -2.8 -2.1 nucleoside-diphosphate kinase compare
BWI76_RS09755 -2.8 -5.1 phosphoserine transaminase compare
BWI76_RS12040 -2.8 -0.9 hypothetical protein compare
BWI76_RS24025 -2.8 -4.5 agmatinase compare
BWI76_RS20145 -2.7 -1.1 NADH-quinone oxidoreductase subunit K compare
BWI76_RS19840 -2.7 -0.9 hypothetical protein compare
BWI76_RS04240 -2.7 -1.6 thr operon leader peptide compare
BWI76_RS25960 -2.7 -3.0 NUDIX hydrolase compare
BWI76_RS25920 -2.7 -1.5 peptidylprolyl isomerase compare
BWI76_RS19045 -2.7 -4.7 capsular polysaccharide biosynthesis protein compare
BWI76_RS08430 -2.7 -3.4 succinate--CoA ligase subunit alpha compare
BWI76_RS05450 -2.7 -0.9 ribonuclease HI compare
BWI76_RS09760 -2.7 -4.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS06490 -2.6 -4.2 cytochrome ubiquinol oxidase subunit I compare
BWI76_RS19770 -2.6 -1.5 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS26570 -2.6 -2.7 anion permease compare
BWI76_RS04645 -2.6 -4.2 3-dehydroquinase compare
BWI76_RS03415 -2.6 -2.1 LacI family transcriptional regulator compare
BWI76_RS12070 -2.6 -0.9 hypothetical protein compare
BWI76_RS05835 -2.6 -1.6 gamma-glutamyl-phosphate reductase compare
BWI76_RS08725 -2.5 -3.7 Formiminoglutamase (EC 3.5.3.8) (from data) compare
BWI76_RS06485 -2.5 -1.7 cytochrome o ubiquinol oxidase subunit III compare
BWI76_RS04705 -2.5 -2.3 DNA-binding transcriptional regulator FruR compare
BWI76_RS26940 -2.5 -6.2 transcriptional regulator compare
BWI76_RS00355 -2.5 -1.5 DNA polymerase I compare
BWI76_RS15955 -2.5 -3.2 transcriptional regulator compare
BWI76_RS27280 -2.5 -7.1 polymerase compare
BWI76_RS25060 -2.5 -2.5 lipoprotein NlpI compare
BWI76_RS19730 -2.4 -2.1 1-phosphofructokinase compare
BWI76_RS05005 -2.4 -1.3 polynucleotide adenylyltransferase compare
BWI76_RS00025 -2.4 -0.8 hypothetical protein compare
BWI76_RS26670 -2.4 -7.4 two-component sensor histidine kinase compare
BWI76_RS23895 -2.4 -1.2 Xaa-Pro aminopeptidase compare
BWI76_RS04570 -2.4 -4.1 RNA polymerase-associated protein RapA compare
BWI76_RS20390 -2.4 -2.1 erythronate-4-phosphate dehydrogenase compare
BWI76_RS07675 -2.4 -2.8 DeoR family transcriptional regulator compare
BWI76_RS21535 -2.4 -4.2 inner membrane protein YpjD compare
BWI76_RS02545 -2.4 -4.5 protease modulator HflK compare
BWI76_RS05260 -2.4 -1.0 chaperone compare
BWI76_RS18935 -2.4 -6.1 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS07435 -2.3 -3.1 LacI family transcriptional regulator compare
BWI76_RS00240 -2.3 -1.5 FMN-binding protein MioC compare
BWI76_RS01330 -2.3 -2.8 twin-arginine translocase subunit TatC compare
BWI76_RS26085 -2.3 -0.9 3-dehydroquinate synthase compare
BWI76_RS12345 -2.3 -1.7 nitrite transporter compare
BWI76_RS20435 -2.3 -0.8 chorismate synthase compare
BWI76_RS08525 -2.3 -1.3 colicin transporter compare
BWI76_RS01220 -2.3 -3.8 DNA-dependent helicase II compare
BWI76_RS09640 -2.3 -1.3 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS05120 -2.2 -4.9 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS23360 -2.2 -2.4 diaminopimelate decarboxylase compare
BWI76_RS18950 -2.2 -3.4 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS16605 -2.2 -4.2 hypothetical protein compare
BWI76_RS16485 -2.2 -0.7 ribonuclease T compare
BWI76_RS23915 -2.2 -1.3 5-formyltetrahydrofolate cyclo-ligase compare
BWI76_RS18920 -2.2 -2.0 ATP phosphoribosyltransferase compare
BWI76_RS10575 -2.2 -1.1 polar amino acid ABC transporter permease compare
BWI76_RS27430 -2.2 -0.7 (p)ppGpp synthetase compare
BWI76_RS00345 -2.2 -2.6 protein disulfide oxidoreductase DsbA compare
BWI76_RS14170 -2.2 -1.9 hypothetical protein compare
BWI76_RS01115 -2.2 -1.9 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS20355 -2.2 -1.9 colicin V production protein compare
BWI76_RS14835 -2.1 -1.0 hypothetical protein compare
BWI76_RS27915 -2.1 -1.3 YceK/YidQ family lipoprotein compare
BWI76_RS10305 -2.1 -6.0 transposase compare
BWI76_RS19010 -2.1 -1.3 polysaccharide pyruvyl transferase yvff compare
BWI76_RS18940 -2.1 -3.6 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS19705 -2.1 -3.0 kinase compare
BWI76_RS26470 -2.1 -2.9 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS13820 -2.1 -1.1 hypothetical protein compare
BWI76_RS21810 -2.1 -1.0 universal stress protein compare
BWI76_RS23920 -2.1 -3.7 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS19060 -2.0 -10.8 glucose-1-phosphate thymidylyltransferase compare
BWI76_RS26410 -2.0 -1.1 membrane protein compare
BWI76_RS08385 -2.0 -1.0 citrate (Si)-synthase compare
BWI76_RS21370 -2.0 -0.6 ATP-dependent RNA helicase SrmB compare
BWI76_RS08535 -2.0 -0.8 translocation protein TolB compare
BWI76_RS02970 -2.0 -3.6 trehalose operon repressor compare
BWI76_RS09725 -2.0 -2.3 MurR/RpiR family transcriptional regulator compare
BWI76_RS14390 -2.0 -0.6 hypothetical protein compare
BWI76_RS09660 -2.0 -1.0 DNA translocase FtsK compare
BWI76_RS21715 -2.0 -1.2 transcriptional regulator compare
BWI76_RS00400 -2.0 -0.8 glutamine synthetase compare
BWI76_RS04250 -2.0 -4.3 homoserine kinase compare
BWI76_RS00380 -1.9 -4.5 oxygen-independent coproporphyrinogen III oxidase compare
BWI76_RS05840 -1.9 -3.7 glutamate 5-kinase compare
BWI76_RS12320 -1.9 -6.3 hypothetical protein compare
BWI76_RS04465 -1.9 -2.7 carbamoyl-phosphate synthase small subunit compare
BWI76_RS18550 -1.9 -1.0 tRNA-Asn compare
BWI76_RS27305 -1.9 -5.1 glycosyl transferase compare
BWI76_RS19085 -1.9 -9.5 protein-tyrosine-phosphatase compare
BWI76_RS27275 -1.9 -4.7 hypothetical protein compare
BWI76_RS20380 -1.9 -0.6 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS10465 -1.9 -1.8 hypothetical protein compare
BWI76_RS12090 -1.9 -1.7 HNH endonuclease compare
BWI76_RS21675 -1.9 -0.8 hypothetical protein compare
BWI76_RS20895 -1.9 -3.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS10990 -1.8 -1.5 dihydroorotase compare
BWI76_RS27950 -1.8 -2.0 transcriptional regulator compare
BWI76_RS13590 -1.8 -1.3 hypothetical protein compare
BWI76_RS23830 -1.8 -4.1 hypothetical protein compare
BWI76_RS14320 -1.8 -0.9 hypothetical protein compare
BWI76_RS11255 -1.8 -0.9 putrescine/spermidine ABC transporter ATP-binding protein compare
BWI76_RS18455 -1.8 -0.8 tRNA-Ser compare
BWI76_RS24635 -1.8 -2.0 autoinducer-2 (AI-2) modifying protein LsrG compare
BWI76_RS04305 -1.8 -0.6 molecular chaperone DnaJ compare
BWI76_RS06545 -1.8 -2.3 peptidylprolyl isomerase compare
BWI76_RS27440 -1.8 -2.8 DNA helicase RecG compare
BWI76_RS24585 -1.8 -2.0 glycerol dehydrogenase compare
BWI76_RS09190 -1.8 -1.7 hypothetical protein compare
BWI76_RS12220 -1.8 -7.1 hypothetical protein compare
BWI76_RS01120 -1.8 -3.5 O-antigen translocase compare
BWI76_RS10035 -1.8 -1.0 hypothetical protein compare
BWI76_RS16900 -1.7 -1.5 4-hydroxy-2-oxovalerate aldolase compare
BWI76_RS02580 -1.7 -0.9 23S rRNA (guanosine(2251)-2'-O)-methyltransferase compare
BWI76_RS20795 -1.7 -0.7 ethanolamine catabolic microcompartment shell protein EutN compare
BWI76_RS04470 -1.7 -5.1 carbamoyl phosphate synthase large subunit compare
BWI76_RS12400 -1.7 -3.7 TetR family transcriptional regulator compare
BWI76_RS01095 -1.7 -1.3 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS24120 -1.7 -3.1 YggW family oxidoreductase compare
BWI76_RS11845 -1.7 -1.7 tryptophan synthase subunit beta compare
BWI76_RS11155 -1.7 -1.2 penicillin-binding protein activator LpoB compare
BWI76_RS06765 -1.7 -2.1 transcriptional regulator compare
BWI76_RS23365 -1.7 -3.8 LysR family transcriptional regulator compare
BWI76_RS19905 -1.7 -3.1 OmpK36 porin compare
BWI76_RS04670 -1.7 -5.5 3-isopropylmalate dehydratase large subunit compare
BWI76_RS21685 -1.7 -0.8 hypothetical protein compare
BWI76_RS00180 -1.7 -0.6 F0F1 ATP synthase subunit epsilon compare
BWI76_RS01110 -1.7 -2.4 TDP-fucosamine acetyltransferase compare
BWI76_RS15115 -1.7 -3.9 MFS transporter compare
BWI76_RS25480 -1.7 -1.7 ribonuclease E/G compare
BWI76_RS25600 -1.7 -0.6 tRNA-Thr compare
BWI76_RS00850 -1.7 -5.0 acetylglutamate kinase compare
BWI76_RS00760 -1.7 -4.6 cell division protein FtsN compare
BWI76_RS00855 -1.7 -6.6 argininosuccinate lyase compare


Specific Phenotypes

For 25 genes in this experiment