Experiment set15IT076 for Klebsiella michiganensis M5al
rhizosphere sample 1; outgrowth in LB
Group: rhizosphereMedia:
Culturing: Koxy_ML2a, potted plant
By: Dawn Chiniquy on 4-Apr-19
Specific Phenotypes
For 25 genes in this experiment
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Starch and sucrose metabolism
- Fructose and mannose metabolism
- Nucleotide sugars metabolism
- T cell receptor signaling pathway
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| cellulose biosynthesis | 1 | 1 | 1 |
| D-sorbitol degradation I | 3 | 3 | 1 |
| sucrose degradation I (sucrose phosphotransferase) | 3 | 3 | 1 |
| sucrose degradation III (sucrose invertase) | 4 | 4 | 1 |
| gallate degradation I | 4 | 4 | 1 |
| sucrose degradation IV (sucrose phosphorylase) | 4 | 3 | 1 |
| sucrose degradation VII (sucrose 3-dehydrogenase) | 4 | 1 | 1 |
| gallate degradation II | 5 | 4 | 1 |
| mannitol cycle | 5 | 4 | 1 |
| sucrose degradation II (sucrose synthase) | 5 | 4 | 1 |
| methylgallate degradation | 6 | 4 | 1 |
| protocatechuate degradation I (meta-cleavage pathway) | 8 | 6 | 1 |
| superpathway of vanillin and vanillate degradation | 10 | 7 | 1 |
| syringate degradation | 12 | 6 | 1 |
| heterolactic fermentation | 18 | 16 | 1 |
| superpathway of anaerobic sucrose degradation | 19 | 18 | 1 |