Experiment set15H6 for Pseudomonas stutzeri RCH2

Compare to:

LB with Benzethonium chloride 0.0125 mM

200 most important genes:

  gene name fitness t score description  
Psest_0476 -5.1 -9.8 type I secretion outer membrane protein, TolC family compare
Psest_1154 -4.8 -12.5 RND family efflux transporter, MFP subunit conserved
Psest_3092 -4.7 -2.2 ribonuclease III, bacterial compare
Psest_1153 -4.5 -25.5 Cation/multidrug efflux pump conserved
Psest_3929 -4.2 -7.8 hypothetical protein compare
Psest_0466 -4.1 -5.5 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_2712 -3.9 -5.7 Surface lipoprotein compare
Psest_1049 -3.7 -4.8 Uncharacterized paraquat-inducible protein A compare
Psest_1922 -3.6 -11.6 aminopeptidase N, Escherichia coli type compare
Psest_3960 -3.5 -1.6 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_2945 -3.2 -1.4 septum site-determining protein MinC compare
Psest_2651 -3.0 -4.7 DNA topoisomerase I, bacterial compare
Psest_3565 -2.9 -1.8 hypothetical protein compare
Psest_1417 -2.8 -1.3 hypothetical protein compare
Psest_2946 -2.8 -2.7 septum site-determining protein MinD compare
Psest_2786 -2.7 -1.2 Domain of unknown function (DUF3597). compare
Psest_0024 -2.6 -10.2 LysM domain. compare
Psest_0498 -2.6 -1.2 ribosome small subunit-dependent GTPase A compare
Psest_1871 -2.6 -9.9 Predicted esterase of the alpha-beta hydrolase superfamily compare
Psest_3351 -2.6 -5.2 peptide chain release factor 3 compare
Psest_0515 -2.6 -4.7 rare lipoprotein A compare
Psest_2775 -2.6 -2.5 Glycerol-3-phosphate dehydrogenase compare
Psest_3816 -2.5 -1.2 DNA-directed RNA polymerase, omega subunit compare
Psest_2325 -2.5 -8.9 alpha-L-glutamate ligase-related protein compare
Psest_4128 -2.4 -1.6 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_2304 -2.4 -1.0 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_1496 -2.4 -1.1 Holliday junction DNA helicase, RuvA subunit compare
Psest_2324 -2.4 -12.7 hypothetical protein compare
Psest_3177 -2.4 -1.9 hypothetical protein compare
Psest_3767 -2.3 -5.1 tyrosine recombinase XerC compare
Psest_1510 -2.3 -4.2 Putative Zn-dependent protease, contains TPR repeats compare
Psest_1048 -2.3 -8.1 Uncharacterized paraquat-inducible protein A conserved
Psest_2809 -2.3 -3.3 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_1540 -2.3 -1.2 biotin-dependent carboxylase uncharacterized domain compare
Psest_3301 -2.3 -3.1 Predicted transcriptional regulator, BolA superfamily compare
Psest_0031 -2.3 -1.5 Uncharacterized conserved protein compare
Psest_3305 -2.2 -7.1 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_3303 -2.2 -4.8 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1999 -2.2 -1.2 pseudouridine synthase compare
Psest_3494 -2.1 -2.5 hypothetical protein compare
Psest_1663 -2.1 -3.4 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_2585 -2.1 -1.0 pseudouridylate synthase I compare
Psest_1657 -2.1 -1.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_0489 -2.1 -1.4 phosphoserine phosphatase SerB compare
Psest_0725 -2.0 -1.7 Negative regulator of beta-lactamase expression compare
Psest_2579 -2.0 -5.6 amidophosphoribosyltransferase compare
Psest_1050 -2.0 -11.2 Paraquat-inducible protein B conserved
Psest_1643 -2.0 -1.1 hypothetical protein compare
Psest_2232 -2.0 -11.1 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_2025 -2.0 -0.9 cold shock domain protein CspD compare
Psest_1087 -2.0 -1.2 uncharacterized peroxidase-related enzyme compare
Psest_1532 -2.0 -3.7 DNA recombination-dependent growth factor C compare
Psest_3306 -2.0 -4.6 conserved hypothetical integral membrane protein compare
Psest_1986 -1.9 -1.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_4049 -1.9 -1.3 hypothetical protein compare
Psest_3881 -1.9 -1.2 hypothetical protein compare
Psest_1457 -1.9 -1.3 FOG: Ankyrin repeat compare
Psest_4183 -1.9 -2.3 PilZ domain. compare
Psest_0015 -1.9 -2.3 Tetratricopeptide repeat. compare
Psest_0457 -1.9 -2.6 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_1149 -1.9 -3.3 Protein affecting phage T7 exclusion by the F plasmid compare
Psest_0759 -1.9 -1.6 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_3307 -1.8 -7.3 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_3338 -1.8 -1.5 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_1456 -1.8 -3.0 Protein of unknown function (DUF2892). compare
Psest_1870 -1.8 -1.3 Transcriptional regulators compare
Psest_0141 -1.8 -4.1 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_0485 -1.8 -3.1 clan AA aspartic protease, TIGR02281 family compare
Psest_1474 -1.8 -3.5 phosphoribosylaminoimidazole synthetase compare
Psest_3047 -1.8 -1.0 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_3304 -1.8 -5.0 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_0097 -1.8 -1.7 phosphonates metabolism transcriptional regulator PhnF compare
Psest_3339 -1.7 -4.5 Signal transduction histidine kinase compare
Psest_2323 -1.7 -7.6 Uncharacterized protein conserved in archaea compare
Psest_1158 -1.7 -7.2 Predicted thiol oxidoreductase compare
Psest_4191 -1.7 -2.7 Transcriptional regulator compare
Psest_0442 -1.7 -1.6 ATPases of the AAA+ class compare
Psest_1008 -1.7 -1.0 hypothetical protein compare
Psest_1056 -1.7 -1.5 2-isopropylmalate synthase, bacterial type compare
Psest_1516 -1.6 -2.7 Uncharacterized lipoprotein compare
Psest_3458 -1.6 -3.2 hypothetical protein compare
Psest_3883 -1.6 -6.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3159 -1.6 -5.3 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1617 -1.6 -2.5 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Psest_1724 -1.6 -2.9 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0455 -1.6 -4.7 ADP-heptose:LPS heptosyltransferase compare
Psest_2923 -1.5 -1.6 hypothetical protein compare
Psest_4044 -1.5 -2.3 type I site-specific deoxyribonuclease, HsdR family compare
Psest_0193 -1.5 -1.0 conserved hypothetical protein compare
Psest_2758 -1.5 -2.4 Predicted transcriptional regulators compare
Psest_2591 -1.5 -2.1 3-isopropylmalate dehydratase, large subunit compare
Psest_1159 -1.5 -4.9 Uncharacterized iron-regulated protein compare
Psest_0401 -1.5 -1.9 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_0115 -1.4 -1.0 Predicted integral membrane protein compare
Psest_0298 -1.4 -3.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3129 -1.4 -0.9 tyrosine recombinase XerD compare
Psest_1518 -1.4 -1.6 tRNA_Ser_CGA compare
Psest_2333 -1.4 -0.8 Protein of unknown function (DUF3359). compare
Psest_2648 -1.4 -1.7 hypothetical protein compare
Psest_2766 -1.4 -0.8 hypothetical protein compare
Psest_2793 -1.4 -2.6 hypothetical protein compare
Psest_3878 -1.4 -2.9 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1837 -1.4 -3.7 Endoglucanase compare
Psest_1814 -1.4 -7.5 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1156 -1.4 -3.8 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Psest_2855 -1.3 -1.1 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1013 -1.3 -2.6 phosphoribosylamine--glycine ligase compare
Psest_0259 -1.3 -0.9 cell division ATP-binding protein FtsE compare
Psest_3810 -1.3 -1.0 orotate phosphoribosyltransferase compare
Psest_1939 -1.3 -5.4 Tetratricopeptide repeat. compare
Psest_2580 -1.3 -3.7 Uncharacterized membrane protein, required for colicin V production compare
Psest_3884 -1.3 -0.8 Signal transduction histidine kinase compare
Psest_0417 -1.3 -1.9 Acyl-CoA dehydrogenases compare
Psest_3042 -1.3 -0.9 Nitrate reductase cytochrome c-type subunit compare
Psest_0060 -1.3 -1.6 Predicted Fe-S protein compare
Psest_2122 -1.3 -0.8 Parvulin-like peptidyl-prolyl isomerase compare
Psest_1157 -1.3 -2.9 Predicted periplasmic lipoprotein compare
Psest_1659 -1.2 -2.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_0310 -1.2 -2.7 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_2590 -1.2 -0.7 3-isopropylmalate dehydratase, small subunit compare
Psest_1444 -1.2 -1.9 Curli production assembly/transport component CsgF. compare
Psest_1217 -1.2 -4.1 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein compare
Psest_4371 -1.2 -2.3 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_3662 -1.2 -2.1 DnaJ-domain-containing proteins 1 compare
Psest_3039 -1.2 -1.0 periplasmic nitrate reductase, NapE protein compare
Psest_2104 -1.2 -1.4 IscR-regulated protein YhgI compare
Psest_1942 -1.2 -4.2 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
Psest_2626 -1.2 -2.5 Flp pilus assembly protein CpaB compare
Psest_1704 -1.2 -1.1 Dehydrogenases (flavoproteins) compare
Psest_1122 -1.2 -7.9 putative adhesin (DUF1302) (from data) compare
Psest_0181 -1.2 -3.8 glycine cleavage system T protein compare
Psest_3383 -1.2 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_1551 -1.2 -2.4 Integral membrane protein, interacts with FtsH compare
Psest_3044 -1.2 -3.0 deoxycytidine triphosphate deaminase compare
Psest_0533 -1.2 -2.5 Sel1 repeat. compare
Psest_1058 -1.2 -1.4 ribosomal-protein-alanine acetyltransferase compare
Psest_2744 -1.2 -1.0 Uncharacterized conserved protein compare
Psest_1661 -1.2 -1.5 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_2940 -1.1 -1.9 Predicted membrane protein compare
Psest_2240 -1.1 -1.3 hypothetical protein compare
Psest_1804 -1.1 -1.5 Superfamily II DNA and RNA helicases compare
Psest_4082 -1.1 -2.7 hypothetical protein compare
Psest_0189 -1.1 -3.9 Negative regulator of beta-lactamase expression compare
Psest_3027 -1.1 -3.0 AZL_007950 family protein compare
Psest_3474 -1.1 -2.8 Short-chain dehydrogenases of various substrate specificities compare
Psest_1315 -1.1 -1.1 hypothetical protein compare
Psest_1940 -1.1 -1.5 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain compare
Psest_0691 -1.1 -5.7 ribonuclease R compare
Psest_0028 -1.1 -2.9 Coproporphyrinogen III oxidase compare
Psest_1167 -1.1 -0.6 hypothetical protein compare
Psest_4310 -1.1 -1.2 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_1505 -1.1 -1.2 Organic radical activating enzymes compare
Psest_4219 -1.1 -1.3 DNA polymerase I compare
Psest_1480 -1.1 -1.4 arsenate reductase (glutaredoxin) compare
Psest_3322 -1.0 -8.0 TIGR02099 family protein compare
Psest_2719 -1.0 -1.9 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_3146 -1.0 -1.0 hypothetical protein compare
Psest_3756 -1.0 -1.9 hypothetical protein compare
Psest_0311 -1.0 -3.5 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_0320 -1.0 -3.5 ABC-type multidrug transport system, ATPase component compare
Psest_2748 -1.0 -1.0 Transcriptional regulator compare
Psest_0735 -1.0 -4.6 bacterioferritin compare
Psest_1313 -1.0 -0.9 Uncharacterized conserved small protein compare
Psest_4126 -1.0 -1.1 Predicted peroxiredoxins compare
Psest_4258 -1.0 -2.0 ABC-type uncharacterized transport system, auxiliary component compare
Psest_0459 -1.0 -5.3 Predicted carbamoyl transferase, NodU family compare
Psest_2293 -1.0 -0.8 hypothetical protein compare
Psest_3024 -1.0 -2.5 cytochrome d oxidase, subunit II (cydB) compare
Psest_3513 -1.0 -3.5 Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (from data) compare
Psest_0702 -1.0 -2.7 Methyl-accepting chemotaxis protein compare
Psest_0186 -1.0 -3.1 Protein-disulfide isomerase compare
Psest_0534 -1.0 -3.3 hypothetical protein compare
Psest_4163 -1.0 -1.1 hypothetical protein compare
Psest_4213 -1.0 -5.5 hypothetical protein conserved
Psest_2764 -1.0 -0.6 hypothetical protein compare
Psest_0744 -1.0 -0.6 Uncharacterized conserved protein compare
Psest_4243 -1.0 -1.0 type VI secretion lipoprotein, VC_A0113 family compare
Psest_3064 -1.0 -1.5 hypothetical protein compare
Psest_1792 -1.0 -1.8 RND family efflux transporter, MFP subunit compare
Psest_0161 -1.0 -1.5 Membrane-bound metallopeptidase compare
Psest_3455 -1.0 -1.4 Dihaem cytochrome c. compare
Psest_1640 -1.0 -5.5 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_1327 -1.0 -4.7 Superfamily II DNA/RNA helicases, SNF2 family compare
Psest_1053 -0.9 -1.4 hypothetical protein compare
Psest_3063 -0.9 -2.5 hypothetical protein compare
Psest_1022 -0.9 -3.7 Thiol:disulfide interchange protein compare
Psest_0225 -0.9 -1.6 Predicted permease, DMT superfamily compare
Psest_3013 -0.9 -1.3 cobyrinic acid a,c-diamide synthase compare
Psest_1593 -0.9 -3.2 hypothetical protein compare
Psest_1677 -0.9 -1.6 Protein-tyrosine-phosphatase compare
Psest_1920 -0.9 -0.6 Uncharacterized protein conserved in bacteria compare
Psest_0196 -0.9 -5.7 Uncharacterized membrane protein, required for spore maturation in B.subtilis. compare
Psest_0852 -0.9 -3.1 glucose-6-phosphate 1-dehydrogenase compare
Psest_3173 -0.9 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_3505 -0.9 -3.3 Superfamily II DNA and RNA helicases compare
Psest_3365 -0.9 -2.6 Predicted membrane protein compare
Psest_0734 -0.9 -1.5 RND family efflux transporter, MFP subunit compare
Psest_1655 -0.9 -2.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_4064 -0.9 -1.5 Lactate dehydrogenase and related dehydrogenases compare
Psest_2018 -0.9 -1.2 Uncharacterized conserved protein compare


Specific Phenotypes

For 8 genes in this experiment

For stress Benzethonium chloride in Pseudomonas stutzeri RCH2

For stress Benzethonium chloride across organisms