Experiment set15H5 for Pseudomonas stutzeri RCH2

Compare to:

LB with Benzethonium chloride 0.01 mM

200 most important genes:

  gene name fitness t score description  
Psest_2712 -4.7 -5.6 Surface lipoprotein compare
Psest_3338 -3.8 -1.4 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_1153 -3.3 -20.4 Cation/multidrug efflux pump conserved
Psest_1922 -3.2 -11.0 aminopeptidase N, Escherichia coli type compare
Psest_1999 -3.1 -1.4 pseudouridine synthase compare
Psest_2243 -3.0 -1.4 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_1154 -2.8 -9.8 RND family efflux transporter, MFP subunit conserved
Psest_2023 -2.8 -4.0 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_1532 -2.8 -4.6 DNA recombination-dependent growth factor C compare
Psest_0476 -2.7 -8.2 type I secretion outer membrane protein, TolC family compare
Psest_2025 -2.5 -1.1 cold shock domain protein CspD compare
Psest_3929 -2.5 -5.9 hypothetical protein compare
Psest_3351 -2.4 -6.0 peptide chain release factor 3 compare
Psest_3890 -2.4 -1.8 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_1510 -2.3 -4.5 Putative Zn-dependent protease, contains TPR repeats compare
Psest_4191 -2.2 -3.6 Transcriptional regulator compare
Psest_2718 -2.1 -1.3 hypothetical protein compare
Psest_0133 -2.1 -1.3 type VI secretion protein, VC_A0107 family compare
Psest_2946 -2.0 -3.6 septum site-determining protein MinD compare
Psest_3042 -2.0 -1.3 Nitrate reductase cytochrome c-type subunit compare
Psest_2333 -1.9 -1.0 Protein of unknown function (DUF3359). compare
Psest_2240 -1.9 -1.9 hypothetical protein compare
Psest_0466 -1.9 -3.6 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3226 -1.9 -0.9 Predicted membrane protein compare
Psest_0164 -1.8 -0.8 Glutaredoxin, GrxC family compare
Psest_3518 -1.8 -1.2 Transcriptional regulators compare
Psest_0028 -1.8 -4.0 Coproporphyrinogen III oxidase compare
Psest_0309 -1.8 -1.1 RND family efflux transporter, MFP subunit compare
Psest_0958 -1.8 -6.0 Oligoketide cyclase/lipid transport protein compare
Psest_3129 -1.7 -1.1 tyrosine recombinase XerD compare
Psest_1227 -1.7 -2.8 Predicted SAM-dependent methyltransferase compare
Psest_3303 -1.7 -4.6 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_4044 -1.7 -2.6 type I site-specific deoxyribonuclease, HsdR family compare
Psest_1659 -1.7 -2.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_4310 -1.7 -1.1 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_2104 -1.7 -1.8 IscR-regulated protein YhgI compare
Psest_2744 -1.6 -1.3 Uncharacterized conserved protein compare
Psest_2872 -1.6 -1.7 protein RecA compare
Psest_3816 -1.6 -1.0 DNA-directed RNA polymerase, omega subunit compare
Psest_2901 -1.6 -1.5 hypothetical protein compare
Psest_2324 -1.6 -10.8 hypothetical protein compare
Psest_1013 -1.5 -2.5 phosphoribosylamine--glycine ligase compare
Psest_3377 -1.5 -0.8 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1997 -1.5 -1.8 6-phosphogluconolactonase compare
Psest_4010 -1.5 -1.2 peroxiredoxin, OsmC subfamily compare
Psest_1704 -1.5 -1.3 Dehydrogenases (flavoproteins) compare
Psest_3960 -1.5 -1.2 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_3168 -1.5 -1.6 Molybdopterin converting factor, large subunit compare
Psest_1657 -1.5 -1.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_1179 -1.5 -1.5 2-hydroxy-3-oxopropionate reductase compare
Psest_3092 -1.5 -1.5 ribonuclease III, bacterial compare
Psest_0191 -1.5 -0.9 PAS domain S-box compare
Psest_0744 -1.5 -0.9 Uncharacterized conserved protein compare
Psest_3304 -1.4 -4.2 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_3307 -1.4 -5.3 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_2325 -1.4 -6.9 alpha-L-glutamate ligase-related protein compare
Psest_2775 -1.4 -2.7 Glycerol-3-phosphate dehydrogenase compare
Psest_3247 -1.4 -0.9 Uncharacterized membrane protein compare
Psest_2764 -1.4 -0.9 hypothetical protein compare
Psest_2798 -1.4 -1.7 Truncated hemoglobins compare
Psest_3810 -1.4 -1.1 orotate phosphoribosyltransferase compare
Psest_3306 -1.4 -4.1 conserved hypothetical integral membrane protein compare
Psest_2646 -1.4 -1.7 SOS regulatory protein LexA compare
Psest_2579 -1.4 -4.6 amidophosphoribosyltransferase compare
Psest_1695 -1.4 -2.5 Tfp pilus assembly protein PilZ compare
Psest_2304 -1.4 -0.8 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_3565 -1.4 -1.1 hypothetical protein compare
Psest_1661 -1.4 -1.8 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_3159 -1.3 -5.0 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_2293 -1.3 -1.0 hypothetical protein compare
Psest_1951 -1.3 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_1804 -1.3 -1.6 Superfamily II DNA and RNA helicases compare
Psest_0673 -1.3 -3.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_2981 -1.3 -1.3 sodium pump decarboxylases, gamma subunit compare
Psest_2855 -1.3 -1.3 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_0243 -1.3 -1.1 hypothetical protein compare
Psest_3151 -1.3 -1.9 hypothetical protein compare
Psest_2757 -1.3 -1.0 hypothetical protein compare
Psest_3921 -1.3 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_0498 -1.2 -0.7 ribosome small subunit-dependent GTPase A compare
Psest_2405 -1.2 -2.0 NAD-dependent protein deacetylases, SIR2 family compare
Psest_1008 -1.2 -0.9 hypothetical protein compare
Psest_2266 -1.2 -2.4 hypothetical protein compare
Psest_3305 -1.2 -4.7 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_3531 -1.2 -0.9 Peptidase propeptide and YPEB domain. compare
Psest_0998 -1.2 -1.7 poly(A) polymerase compare
Psest_2323 -1.2 -7.0 Uncharacterized protein conserved in archaea compare
Psest_1940 -1.2 -3.0 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain compare
Psest_0872 -1.2 -0.9 Helix-turn-helix. compare
Psest_0442 -1.2 -2.4 ATPases of the AAA+ class compare
Psest_3339 -1.2 -2.5 Signal transduction histidine kinase compare
Psest_1960 -1.2 -2.4 Bacterial protein of unknown function (DUF903). compare
Psest_2018 -1.2 -1.8 Uncharacterized conserved protein compare
Psest_0970 -1.1 -1.6 hypothetical protein compare
Psest_1871 -1.1 -4.7 Predicted esterase of the alpha-beta hydrolase superfamily compare
Psest_1474 -1.1 -3.2 phosphoribosylaminoimidazole synthetase compare
Psest_3735 -1.1 -1.4 uncharacterized domain 1 compare
Psest_2138 -1.1 -2.0 RND family efflux transporter, MFP subunit compare
Psest_0114 -1.1 -1.8 RNA polymerase sigma factor, sigma-70 family compare
Psest_0024 -1.1 -5.7 LysM domain. compare
Psest_0212 -1.1 -1.1 exodeoxyribonuclease V, gamma subunit compare
Psest_1540 -1.1 -1.1 biotin-dependent carboxylase uncharacterized domain compare
Psest_0320 -1.1 -3.5 ABC-type multidrug transport system, ATPase component compare
Psest_2647 -1.1 -1.5 SOS-response cell division inhibitor, blocks FtsZ ring formation compare
Psest_2648 -1.1 -1.4 hypothetical protein compare
Psest_3146 -1.1 -1.3 hypothetical protein compare
Psest_3117 -1.1 -2.3 electron transport complex, RnfABCDGE type, E subunit compare
Psest_1431 -1.1 -3.1 hypothetical protein compare
Psest_0457 -1.1 -2.2 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_2425 -1.1 -1.8 Trk-type K+ transport systems, membrane components compare
Psest_1417 -1.1 -0.9 hypothetical protein compare
Psest_1058 -1.1 -2.4 ribosomal-protein-alanine acetyltransferase compare
Psest_1574 -1.0 -1.8 phenazine biosynthesis protein PhzF family compare
Psest_2940 -1.0 -2.1 Predicted membrane protein compare
Psest_1087 -1.0 -0.6 uncharacterized peroxidase-related enzyme compare
Psest_0959 -1.0 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_3044 -1.0 -3.1 deoxycytidine triphosphate deaminase compare
Psest_1518 -1.0 -1.3 tRNA_Ser_CGA compare
Psest_1159 -1.0 -4.2 Uncharacterized iron-regulated protein compare
Psest_4220 -1.0 -1.6 Protein of unknown function (DUF2782). compare
Psest_1357 -1.0 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_0393 -1.0 -3.4 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3505 -1.0 -3.5 Superfamily II DNA and RNA helicases compare
Psest_3745 -1.0 -2.0 Uncharacterized enzyme of heme biosynthesis compare
Psest_2088 -1.0 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_1856 -1.0 -1.9 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_2853 -1.0 -2.9 hypothetical protein compare
Psest_2756 -1.0 -0.9 hypothetical protein compare
Psest_3080 -1.0 -1.0 AraC-type DNA-binding domain-containing proteins compare
Psest_0999 -0.9 -1.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1814 -0.9 -5.4 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_3413 -0.9 -1.5 hypothetical protein compare
Psest_2520 -0.9 -1.0 Predicted SAM-dependent methyltransferase compare
Psest_3301 -0.9 -1.1 Predicted transcriptional regulator, BolA superfamily compare
Psest_3352 -0.9 -3.6 DnaK suppressor protein compare
Psest_2585 -0.9 -0.6 pseudouridylate synthase I compare
Psest_1434 -0.9 -3.0 NADPH:quinone reductase and related Zn-dependent oxidoreductases compare
Psest_1879 -0.9 -1.8 Trk-type K+ transport systems, membrane components compare
Psest_3155 -0.9 -2.1 hypothetical protein compare
Psest_0632 -0.9 -1.6 hypothetical protein compare
Psest_2594 -0.9 -1.3 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0158 -0.9 -2.9 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_4082 -0.9 -2.2 hypothetical protein compare
Psest_1049 -0.9 -1.8 Uncharacterized paraquat-inducible protein A compare
Psest_1476 -0.9 -3.5 Predicted permease compare
Psest_0083 -0.9 -1.1 Uncharacterized conserved protein compare
Psest_1479 -0.9 -2.1 NAD(P)H:quinone oxidoreductase, type IV compare
Psest_2480 -0.9 -2.2 Methyl-accepting chemotaxis protein compare
Psest_1551 -0.9 -1.7 Integral membrane protein, interacts with FtsH compare
Psest_2651 -0.9 -1.8 DNA topoisomerase I, bacterial compare
Psest_2094 -0.9 -3.1 Predicted Fe-S-cluster redox enzyme compare
Psest_1459 -0.9 -2.5 hypothetical protein compare
Psest_4163 -0.9 -1.3 hypothetical protein compare
Psest_1868 -0.8 -2.6 yecA family protein compare
Psest_1567 -0.8 -1.4 Transcriptional regulator compare
Psest_4345 -0.8 -4.1 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_3937 -0.8 -1.2 ATP-dependent protease HslVU, ATPase subunit compare
Psest_4285 -0.8 -2.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Psest_0031 -0.8 -0.8 Uncharacterized conserved protein compare
Psest_0181 -0.8 -2.5 glycine cleavage system T protein compare
Psest_2511 -0.8 -3.3 molybdenum cofactor biosynthesis protein A, bacterial compare
Psest_2645 -0.8 -2.1 Transcriptional regulator compare
Psest_3002 -0.8 -0.9 Putative translation initiation inhibitor, yjgF family compare
Psest_1763 -0.8 -2.5 hypothetical protein compare
Psest_2935 -0.8 -1.2 hypothetical protein compare
Psest_0534 -0.8 -2.5 hypothetical protein compare
Psest_3112 -0.8 -1.8 electron transport complex, RnfABCDGE type, A subunit compare
Psest_0409 -0.8 -1.1 Putative homoserine kinase type II (protein kinase fold) compare
Psest_3400 -0.8 -0.6 Copper resistance protein D. compare
Psest_3227 -0.8 -3.6 Predicted ester cyclase compare
Psest_0526 -0.8 -2.2 hypothetical protein compare
Psest_3853 -0.8 -1.5 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_0298 -0.8 -2.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1752 -0.8 -0.8 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_2719 -0.8 -1.7 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_1522 -0.8 -1.4 hypothetical protein compare
Psest_0737 -0.8 -0.5 Cu(I)-responsive transcriptional regulator compare
Psest_2581 -0.8 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_3040 -0.8 -2.3 Uncharacterized protein involved in formation of periplasmic nitrate reductase compare
Psest_3064 -0.8 -1.0 hypothetical protein compare
Psest_3357 -0.8 -1.5 Predicted pyrophosphatase compare
Psest_3128 -0.8 -1.6 Protein-disulfide isomerase compare
Psest_4364 -0.8 -1.9 16S rRNA (guanine(527)-N(7))-methyltransferase GidB compare
Psest_2670 -0.8 -1.7 Uncharacterized conserved protein compare
Psest_1161 -0.8 -1.3 E3 Ubiquitin ligase. compare
Psest_0141 -0.8 -2.7 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_4252 -0.8 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_3213 -0.8 -2.8 acetate kinase compare
Psest_1870 -0.8 -0.8 Transcriptional regulators compare
Psest_2626 -0.8 -1.4 Flp pilus assembly protein CpaB compare
Psest_2067 -0.8 -0.5 ABC-type oligopeptide transport system, periplasmic component compare
Psest_2285 -0.8 -1.9 ATP-dependent protease La compare
Psest_4309 -0.8 -2.1 ABC-type Mn/Zn transport systems, ATPase component compare
Psest_0078 -0.8 -0.6 hypothetical protein compare
Psest_1731 -0.8 -0.9 flagellar biosynthetic protein FliO compare
Psest_2724 -0.8 -1.1 hypothetical protein compare
Psest_3908 -0.8 -0.7 Cytochrome c553 compare
Psest_1919 -0.8 -1.3 Uncharacterized membrane protein (homolog of Drosophila rhomboid) compare
Psest_1218 -0.8 -2.1 Predicted endonuclease containing a URI domain compare
Psest_0691 -0.8 -4.2 ribonuclease R compare


Specific Phenotypes

For 5 genes in this experiment

For stress Benzethonium chloride in Pseudomonas stutzeri RCH2

For stress Benzethonium chloride across organisms