Experiment set15H45 for Pseudomonas stutzeri RCH2

Compare to:

RCH2 grown on a colony of 8R2A

200 most important genes:

  gene name fitness t score description  
Psest_1563 -5.6 -1.7 Protein of unknown function (DUF548). compare
Psest_1008 -4.9 -0.8 hypothetical protein compare
Psest_0411 -4.8 -8.6 biotin synthetase compare
Psest_4103 -4.5 -1.2 AraC-type DNA-binding domain-containing proteins compare
Psest_2786 -4.3 -0.7 Domain of unknown function (DUF3597). compare
Psest_0414 -4.2 -4.4 biotin biosynthesis protein BioC compare
Psest_3377 -4.1 -0.6 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_0737 -3.8 -0.8 Cu(I)-responsive transcriptional regulator compare
Psest_3853 -3.7 -2.3 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_2988 -3.6 -8.4 aspartate kinase, monofunctional class compare
Psest_2088 -3.5 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_1115 -3.5 -1.8 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_0831 -3.5 -0.7 hypothetical protein compare
Psest_3456 -3.3 -1.2 RNA polymerase sigma factor, sigma-70 family compare
Psest_2809 -3.3 -2.8 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_2308 -3.2 -0.7 Predicted Fe-S protein compare
Psest_3908 -3.2 -1.1 Cytochrome c553 compare
Psest_3039 -3.0 -1.1 periplasmic nitrate reductase, NapE protein compare
Psest_4252 -3.0 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_3129 -3.0 -0.9 tyrosine recombinase XerD compare
Psest_3478 -3.0 -1.4 Cytochrome B561 compare
Psest_3496 -3.0 -1.1 Predicted metal-binding protein compare
Psest_0537 -3.0 -1.5 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_2265 -2.9 -2.7 Outer membrane protein compare
Psest_0031 -2.8 -1.2 Uncharacterized conserved protein compare
Psest_1999 -2.8 -0.7 pseudouridine synthase compare
Psest_0412 -2.8 -9.9 8-amino-7-oxononanoate synthase compare
Psest_4191 -2.8 -2.3 Transcriptional regulator compare
Psest_2023 -2.8 -2.0 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_3070 -2.8 -1.8 3-oxoadipyl-CoA thiolase compare
Psest_0415 -2.7 -3.4 dethiobiotin synthase compare
Psest_1782 -2.7 -1.6 Predicted transcriptional regulators compare
Psest_3031 -2.7 -0.6 hypothetical protein compare
Psest_0536 -2.7 -3.7 thiamine-phosphate pyrophosphorylase compare
Psest_0508 -2.6 -7.7 gamma-glutamyl phosphate reductase compare
Psest_0129 -2.6 -13.6 Protein of unknown function (DUF2931). compare
Psest_0267 -2.6 -7.8 Uncharacterized enzyme of thiazole biosynthesis compare
Psest_0306 -2.5 -11.7 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_0401 -2.5 -1.4 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_0413 -2.5 -4.2 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_4078 -2.4 -1.9 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_4310 -2.4 -1.3 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_0266 -2.4 -5.0 thiamine biosynthesis protein ThiS compare
Psest_0193 -2.4 -1.0 conserved hypothetical protein compare
Psest_4350 -2.4 -5.1 Transcriptional regulators of sugar metabolism compare
Psest_1888 -2.4 -0.7 Sua5/YciO/YrdC/YwlC family protein compare
Psest_0477 -2.4 -11.8 thiamine biosynthesis protein ThiC compare
Psest_4010 -2.3 -0.9 peroxiredoxin, OsmC subfamily compare
Psest_2333 -2.3 -0.7 Protein of unknown function (DUF3359). compare
Psest_3148 -2.3 -0.8 hypothetical protein compare
Psest_1159 -2.3 -5.5 Uncharacterized iron-regulated protein compare
Psest_0316 -2.2 -1.8 Cytochrome c556 compare
Psest_1012 -2.2 -3.0 Signal transduction histidine kinase compare
Psest_1752 -2.2 -1.1 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_0311 -2.2 -4.4 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_1774 -2.2 -1.6 Glutathione peroxidase compare
Psest_3247 -2.1 -1.3 Uncharacterized membrane protein compare
Psest_0357 -2.1 -2.0 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3351 -2.1 -2.5 peptide chain release factor 3 compare
Psest_0133 -2.1 -0.8 type VI secretion protein, VC_A0107 family compare
Psest_1643 -2.1 -0.7 hypothetical protein compare
Psest_1315 -2.1 -1.3 hypothetical protein compare
Psest_4009 -2.1 -3.8 conserverd hypothetical protein compare
Psest_2671 -2.0 -1.9 Transcriptional regulator compare
Psest_0872 -2.0 -0.8 Helix-turn-helix. compare
Psest_1551 -2.0 -2.3 Integral membrane protein, interacts with FtsH compare
Psest_1920 -2.0 -0.4 Uncharacterized protein conserved in bacteria compare
Psest_1226 -2.0 -2.4 hypothetical protein compare
Psest_1366 -2.0 -1.1 hypothetical protein compare
Psest_2626 -2.0 -2.3 Flp pilus assembly protein CpaB compare
Psest_2953 -2.0 -1.2 Histone acetyltransferase compare
Psest_3653 -1.9 -5.3 4-aminobutyrate aminotransferase, prokaryotic type compare
Psest_2424 -1.9 -1.1 K+ transport systems, NAD-binding component compare
Psest_3384 -1.9 -5.8 glutamate 5-kinase compare
Psest_2325 -1.9 -6.9 alpha-L-glutamate ligase-related protein compare
Psest_1724 -1.9 -2.3 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0309 -1.9 -0.5 RND family efflux transporter, MFP subunit compare
Psest_1695 -1.8 -2.6 Tfp pilus assembly protein PilZ compare
Psest_0191 -1.8 -0.7 PAS domain S-box compare
Psest_3047 -1.8 -0.8 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_2757 -1.8 -0.7 hypothetical protein compare
Psest_2520 -1.8 -1.1 Predicted SAM-dependent methyltransferase compare
Psest_1872 -1.8 -2.5 selT/selW/selH selenoprotein domain compare
Psest_3155 -1.8 -2.5 hypothetical protein compare
Psest_3565 -1.8 -1.0 hypothetical protein compare
Psest_1158 -1.8 -6.5 Predicted thiol oxidoreductase compare
Psest_1167 -1.8 -0.7 hypothetical protein compare
Psest_2651 -1.7 -2.4 DNA topoisomerase I, bacterial compare
Psest_0869 -1.7 -1.7 Acetyltransferase (isoleucine patch superfamily) compare
Psest_4061 -1.7 -2.3 sulfate ABC transporter, permease protein CysT compare
Psest_2945 -1.7 -0.8 septum site-determining protein MinC compare
Psest_1259 -1.7 -3.7 23S rRNA m2A2503 methyltransferase compare
Psest_0170 -1.6 -4.8 5,10-methenyltetrahydrofolate synthetase compare
Psest_0498 -1.6 -0.6 ribosome small subunit-dependent GTPase A compare
Psest_2243 -1.6 -0.6 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_1147 -1.6 -2.3 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2359 -1.6 -3.4 Predicted permeases compare
Psest_3042 -1.6 -0.7 Nitrate reductase cytochrome c-type subunit compare
Psest_0094 -1.6 -1.5 Uncharacterized enzyme of phosphonate metabolism compare
Psest_1990 -1.6 -1.8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs compare
Psest_1884 -1.6 -1.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0725 -1.5 -1.3 Negative regulator of beta-lactamase expression compare
Psest_3962 -1.5 -0.9 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_1354 -1.5 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_0310 -1.5 -0.9 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_0050 -1.5 -2.7 Predicted acetyltransferase compare
Psest_1642 -1.5 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_1001 -1.5 -2.1 hypothetical protein compare
Psest_1902 -1.5 -2.1 hypothetical protein compare
Psest_1660 -1.5 -0.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_3236 -1.5 -2.1 hypothetical protein compare
Psest_3237 -1.5 -0.9 hypothetical protein compare
Psest_4178 -1.5 -1.6 hypothetical protein compare
Psest_0113 -1.4 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_1486 -1.4 -1.5 hypothetical protein compare
Psest_2992 -1.4 -2.6 Uncharacterized conserved protein compare
Psest_0952 -1.4 -1.4 Uncharacterized conserved protein compare
Psest_0820 -1.4 -2.4 hypothetical protein compare
Psest_1280 -1.4 -7.5 TonB-dependent copper receptor compare
Psest_1103 -1.4 -1.5 GTP-binding protein YchF compare
Psest_3792 -1.4 -1.9 Putative translation initiation inhibitor, yjgF family compare
Psest_0066 -1.4 -1.0 Protein of unknown function (DUF3060). compare
Psest_2525 -1.4 -2.1 cytochrome c oxidase, cbb3-type, subunit II compare
Psest_2579 -1.4 -4.2 amidophosphoribosyltransferase compare
Psest_2238 -1.4 -1.6 hypothetical protein compare
Psest_2035 -1.4 -2.9 crcB protein compare
Psest_1602 -1.4 -1.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3767 -1.4 -3.0 tyrosine recombinase XerC compare
Psest_2670 -1.4 -2.4 Uncharacterized conserved protein compare
Psest_2025 -1.4 -0.6 cold shock domain protein CspD compare
Psest_1717 -1.4 -2.6 benzoate transporter compare
Psest_0237 -1.4 -2.1 intracellular protease, PfpI family compare
Psest_0958 -1.4 -3.5 Oligoketide cyclase/lipid transport protein compare
Psest_4267 -1.4 -2.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0998 -1.4 -1.7 poly(A) polymerase compare
Psest_0919 -1.4 -1.0 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_3991 -1.3 -1.3 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Psest_3400 -1.3 -0.6 Copper resistance protein D. compare
Psest_1466 -1.3 -1.5 transcriptional regulator, Spx/MgsR family compare
Psest_1065 -1.3 -1.2 hypothetical protein compare
Psest_2266 -1.3 -1.3 hypothetical protein compare
Psest_2866 -1.3 -1.9 Uncharacterized conserved protein compare
Psest_3004 -1.3 -3.6 cobalamin 5'-phosphate synthase/cobalamin synthase compare
Psest_2278 -1.3 -1.1 coenzyme PQQ biosynthesis protein PqqD compare
Psest_2122 -1.3 -0.8 Parvulin-like peptidyl-prolyl isomerase compare
Psest_1511 -1.3 -2.1 Predicted redox protein, regulator of disulfide bond formation compare
Psest_4298 -1.3 -0.6 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_0587 -1.3 -1.5 Domain of Unknown Function (DUF326). compare
Psest_4209 -1.3 -1.4 Uncharacterized conserved small protein compare
Psest_3884 -1.3 -0.5 Signal transduction histidine kinase compare
Psest_2566 -1.3 -0.5 Uncharacterized protein conserved in bacteria compare
Psest_0759 -1.3 -0.9 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_0186 -1.3 -2.8 Protein-disulfide isomerase compare
Psest_3389 -1.3 -1.6 hypothetical protein compare
Psest_1794 -1.3 -2.1 Flagellar motor protein compare
Psest_4214 -1.3 -6.6 hypothetical protein compare
Psest_0120 -1.3 -2.5 hypothetical protein compare
Psest_3301 -1.3 -1.3 Predicted transcriptional regulator, BolA superfamily compare
Psest_3780 -1.2 -1.5 Transcriptional regulator compare
Psest_0549 -1.2 -2.6 Predicted acetyltransferase compare
Psest_4064 -1.2 -1.7 Lactate dehydrogenase and related dehydrogenases compare
Psest_3106 -1.2 -2.7 Predicted outer membrane protein compare
Psest_3413 -1.2 -1.6 hypothetical protein compare
Psest_0867 -1.2 -0.6 hypothetical protein compare
Psest_4335 -1.2 -1.1 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_2744 -1.2 -0.8 Uncharacterized conserved protein compare
Psest_1882 -1.2 -3.7 Signal transduction histidine kinase compare
Psest_1357 -1.2 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_2047 -1.2 -1.9 Signal transduction histidine kinase compare
Psest_1532 -1.2 -2.1 DNA recombination-dependent growth factor C compare
Psest_0390 -1.2 -1.9 Short-chain dehydrogenases of various substrate specificities compare
Psest_1824 -1.2 -1.7 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_2855 -1.2 -0.8 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1870 -1.2 -0.6 Transcriptional regulators compare
Psest_2123 -1.2 -1.0 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_0051 -1.2 -2.5 hypothetical protein compare
Psest_2324 -1.2 -5.8 hypothetical protein compare
Psest_3564 -1.2 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_2447 -1.2 -1.5 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0747 -1.2 -1.9 Putative GTPases (G3E family) compare
Psest_2853 -1.2 -2.9 hypothetical protein compare
Psest_3230 -1.2 -3.4 Uncharacterized conserved protein compare
Psest_2358 -1.2 -1.0 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0155 -1.2 -2.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3539 -1.2 -5.4 exonuclease SbcD compare
Psest_3303 -1.2 -2.6 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3077 -1.1 -1.3 Protein of unknown function (DUF3203). compare
Psest_1417 -1.1 -0.5 hypothetical protein compare
Psest_4147 -1.1 -2.1 Flagellar basal body L-ring protein compare
Psest_3069 -1.1 -0.9 3-oxoadipate enol-lactonase compare
Psest_2955 -1.1 -1.7 Predicted transcriptional regulator with C-terminal CBS domains compare
Psest_2645 -1.1 -3.4 Transcriptional regulator compare
Psest_3173 -1.1 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_2130 -1.1 -1.3 exodeoxyribonuclease III compare
Psest_1709 -1.1 -1.9 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_0734 -1.1 -1.7 RND family efflux transporter, MFP subunit compare
Psest_4090 -1.1 -2.1 diaminobutyrate acetyltransferase compare
Psest_3702 -1.1 -1.2 Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase compare
Psest_1498 -1.1 -1.4 tol-pal system-associated acyl-CoA thioesterase compare
Psest_1919 -1.1 -1.5 Uncharacterized membrane protein (homolog of Drosophila rhomboid) compare


Specific Phenotypes

For 7 genes in this experiment