Experiment set15H45 for Pseudomonas stutzeri RCH2
RCH2 grown on a colony of 8R2A
Group:Media:
Culturing: psRCH2_ML7c
By: Peter Rademacher on
Specific Phenotypes
For 7 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| DNA repair, bacterial | 1 |
| Hemin transport system | 1 |
| Lysine degradation | 1 |
| Transport of Iron | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Glutamate metabolism
- Alanine and aspartate metabolism
- Lysine degradation
- beta-Alanine metabolism
- Propanoate metabolism
- Butanoate metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| 4-aminobutanoate degradation III | 2 | 2 | 1 |
| 4-aminobutanoate degradation II | 2 | 1 | 1 |
| 4-aminobutanoate degradation I | 2 | 1 | 1 |
| superpathway of 4-aminobutanoate degradation | 3 | 1 | 1 |
| GABA shunt I | 4 | 1 | 1 |
| GABA shunt II | 4 | 1 | 1 |
| L-lysine degradation IV | 5 | 3 | 1 |
| L-lysine degradation X | 6 | 5 | 1 |
| L-lysine degradation III | 6 | 2 | 1 |
| L-lysine degradation I | 7 | 4 | 1 |
| 4-aminobutanoate degradation V | 7 | 3 | 1 |
| superpathway of L-arginine, putrescine, and 4-aminobutanoate degradation | 11 | 6 | 1 |
| superpathway of L-arginine and L-ornithine degradation | 13 | 8 | 1 |
| nicotine degradation I (pyridine pathway) | 17 | 5 | 1 |
| superpathway of L-lysine degradation | 43 | 11 | 1 |