Experiment set15H43 for Pseudomonas stutzeri RCH2

Compare to:

RCH2 grown on a colony of N2C3

200 most important genes:

  gene name fitness t score description  
Psest_1167 -4.8 -0.9 hypothetical protein compare
Psest_2561 -4.5 -0.8 hypothetical protein compare
Psest_0845 -4.3 -0.8 hypothetical protein compare
Psest_0511 -4.3 -1.4 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_3146 -4.2 -1.3 hypothetical protein compare
Psest_3031 -3.8 -0.7 hypothetical protein compare
Psest_2726 -3.8 -1.2 Rhodanese-related sulfurtransferase compare
Psest_3496 -3.7 -1.2 Predicted metal-binding protein compare
Psest_2304 -3.6 -0.7 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_2293 -3.6 -0.9 hypothetical protein compare
Psest_1087 -3.5 -0.9 uncharacterized peroxidase-related enzyme compare
Psest_2101 -3.5 -1.5 hypothetical protein compare
Psest_4315 -3.4 -2.4 ABC-type metal ion transport system, permease component compare
Psest_3047 -3.4 -0.9 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_1643 -3.3 -0.9 hypothetical protein compare
Psest_0078 -3.3 -0.9 hypothetical protein compare
Psest_3400 -3.3 -0.9 Copper resistance protein D. compare
Psest_3816 -3.2 -0.8 DNA-directed RNA polymerase, omega subunit compare
Psest_0064 -3.2 -3.3 Transcriptional regulator compare
Psest_2907 -3.1 -0.8 Protein of unknown function (DUF3618). compare
Psest_2532 -3.0 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_4082 -3.0 -3.1 hypothetical protein compare
Psest_0257 -2.9 -1.6 Predicted Zn-dependent peptidases compare
Psest_3301 -2.9 -1.2 Predicted transcriptional regulator, BolA superfamily compare
Psest_4170 -2.9 -1.0 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_0970 -2.9 -1.7 hypothetical protein compare
Psest_2718 -2.9 -0.9 hypothetical protein compare
Psest_0487 -2.8 -3.5 Uncharacterized protein conserved in bacteria compare
Psest_4335 -2.8 -1.3 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_0609 -2.8 -1.0 hypothetical protein compare
Psest_1279 -2.8 -2.1 hypothetical protein compare
Psest_2766 -2.8 -0.7 hypothetical protein compare
Psest_3565 -2.7 -0.8 hypothetical protein compare
Psest_4128 -2.7 -1.3 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_1999 -2.6 -0.8 pseudouridine synthase compare
Psest_0568 -2.6 -3.1 pseudouridine synthase compare
Psest_3092 -2.6 -1.2 ribonuclease III, bacterial compare
Psest_2892 -2.6 -2.7 Transcriptional regulator compare
Psest_1349 -2.6 -2.1 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_2988 -2.5 -5.9 aspartate kinase, monofunctional class compare
Psest_3853 -2.5 -2.0 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_1037 -2.5 -1.9 acetolactate synthase, small subunit compare
Psest_2866 -2.4 -2.7 Uncharacterized conserved protein compare
Psest_1626 -2.4 -2.7 Predicted integral membrane protein compare
Psest_3391 -2.4 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_3721 -2.4 -5.1 Malic enzyme compare
Psest_0093 -2.3 -2.6 Uncharacterized enzyme of phosphonate metabolism compare
Psest_1772 -2.3 -3.4 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0139 -2.3 -4.5 ABC-type histidine transport system, ATPase component compare
Psest_2764 -2.3 -0.8 hypothetical protein compare
Psest_1819 -2.3 -11.0 Nucleoside-diphosphate-sugar epimerases compare
Psest_0857 -2.3 -1.2 Membrane transporters of cations and cationic drugs compare
Psest_1721 -2.3 -2.7 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_3878 -2.3 -2.0 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3173 -2.3 -3.6 Uncharacterized protein conserved in bacteria compare
Psest_4177 -2.2 -1.4 flagellar biosynthetic protein FliP compare
Psest_0284 -2.2 -9.6 pyridoxal phosphate enzyme, YggS family compare
Psest_1103 -2.2 -1.9 GTP-binding protein YchF compare
Psest_0537 -2.2 -1.5 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_1185 -2.2 -2.0 heavy metal response regulator compare
Psest_3399 -2.2 -0.8 Uncharacterized protein conserved in bacteria compare
Psest_2758 -2.1 -2.7 Predicted transcriptional regulators compare
Psest_3204 -2.1 -5.1 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2088 -2.1 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_4168 -2.1 -3.6 Flagellar FliJ protein. compare
Psest_0987 -2.1 -1.4 Predicted periplasmic or secreted lipoprotein compare
Psest_3205 -2.1 -5.5 FolB domain compare
Psest_3951 -2.1 -3.4 proline iminopeptidase, Neisseria-type subfamily compare
Psest_1457 -2.1 -1.3 FOG: Ankyrin repeat compare
Psest_2229 -2.0 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_1392 -2.0 -2.3 ABC-type uncharacterized transport systems, ATPase components compare
Psest_1514 -2.0 -4.1 Glycine cleavage system regulatory protein compare
Psest_0028 -2.0 -2.4 Coproporphyrinogen III oxidase compare
Psest_1691 -2.0 -2.2 aminodeoxychorismate lyase compare
Psest_4298 -2.0 -0.7 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_1111 -2.0 -2.1 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_2855 -2.0 -1.1 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1782 -2.0 -1.3 Predicted transcriptional regulators compare
Psest_3270 -1.9 -1.5 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_2945 -1.9 -0.8 septum site-determining protein MinC compare
Psest_0243 -1.9 -0.8 hypothetical protein compare
Psest_1323 -1.9 -2.8 Hydroxypyruvate isomerase compare
Psest_1496 -1.9 -0.6 Holliday junction DNA helicase, RuvA subunit compare
Psest_1226 -1.9 -2.5 hypothetical protein compare
Psest_4003 -1.9 -3.6 TIGR00153 family protein compare
Psest_4142 -1.9 -1.0 hypothetical protein compare
Psest_4163 -1.9 -1.6 hypothetical protein compare
Psest_2503 -1.9 -2.6 hypothetical protein compare
Psest_2434 -1.8 -2.3 Protein of unknown function (DUF2892). compare
Psest_1026 -1.8 -2.5 Uncharacterized iron-regulated protein compare
Psest_3174 -1.8 -6.4 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_2847 -1.8 -2.5 Multisubunit Na+/H+ antiporter, MnhF subunit compare
Psest_1326 -1.8 -1.6 Uncharacterized conserved protein compare
Psest_1824 -1.7 -2.3 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_1541 -1.7 -4.6 TIGR00370 family protein compare
Psest_2953 -1.7 -0.9 Histone acetyltransferase compare
Psest_3115 -1.7 -4.3 electron transport complex, RnfABCDGE type, D subunit compare
Psest_2967 -1.7 -2.1 flagellar basal-body rod protein FlgC compare
Psest_4010 -1.7 -0.8 peroxiredoxin, OsmC subfamily compare
Psest_0357 -1.7 -1.6 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0449 -1.7 -5.9 Glutamine synthetase adenylyltransferase compare
Psest_1990 -1.7 -1.5 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs compare
Psest_4281 -1.7 -7.4 ABC-type spermidine/putrescine transport system, permease component I compare
Psest_1524 -1.7 -2.0 Sel1 repeat. compare
Psest_3317 -1.7 -3.1 Phosphotransferase System HPr (HPr) Family compare
Psest_0309 -1.7 -0.5 RND family efflux transporter, MFP subunit compare
Psest_0259 -1.7 -0.7 cell division ATP-binding protein FtsE compare
Psest_0919 -1.6 -1.4 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_1539 -1.6 -6.1 Mn2+ and Fe2+ transporters of the NRAMP family compare
Psest_3002 -1.6 -1.4 Putative translation initiation inhibitor, yjgF family compare
Psest_0137 -1.6 -3.9 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_1542 -1.6 -2.8 Uncharacterized proteins, homologs of lactam utilization protein B compare
Psest_1750 -1.6 -1.5 Protein of unknown function (DUF2802). compare
Psest_2092 -1.6 -1.7 hypothetical protein compare
Psest_2954 -1.6 -2.3 hypothetical protein compare
Psest_0740 -1.6 -1.2 Transcriptional regulator compare
Psest_1843 -1.6 -1.3 Uncharacterized Fe-S protein compare
Psest_2712 -1.6 -2.6 Surface lipoprotein compare
Psest_4064 -1.6 -2.2 Lactate dehydrogenase and related dehydrogenases compare
Psest_2316 -1.6 -6.7 phosphoenolpyruvate synthase compare
Psest_2618 -1.6 -2.8 Flp pilus assembly protein TadB compare
Psest_3137 -1.6 -3.4 phosphoribosylglycinamide formyltransferase 2 compare
Psest_3507 -1.6 -2.7 FOG: EAL domain compare
Psest_3100 -1.6 -3.0 RNA polymerase sigma factor RpoE compare
Psest_1642 -1.5 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_1149 -1.5 -2.0 Protein affecting phage T7 exclusion by the F plasmid compare
Psest_3692 -1.5 -2.5 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases compare
Psest_1805 -1.5 -1.3 integration host factor, beta subunit compare
Psest_3860 -1.5 -1.6 Predicted permeases compare
Psest_3112 -1.5 -2.3 electron transport complex, RnfABCDGE type, A subunit compare
Psest_0136 -1.5 -6.9 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_1031 -1.5 -4.6 Uncharacterized protein conserved in bacteria compare
Psest_1856 -1.5 -2.1 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_2066 -1.5 -0.9 ABC-type uncharacterized transport system, permease component compare
Psest_1656 -1.5 -0.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_0119 -1.5 -1.2 hypothetical protein compare
Psest_3477 -1.5 -2.3 Signal transduction histidine kinase compare
Psest_1814 -1.5 -8.1 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0501 -1.5 -2.0 Predicted nucleoside-diphosphate-sugar epimerases compare
Psest_1813 -1.5 -5.7 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_3415 -1.5 -8.8 hypothetical protein compare
Psest_0734 -1.5 -2.0 RND family efflux transporter, MFP subunit compare
Psest_1817 -1.4 -3.7 hypothetical protein compare
Psest_4282 -1.4 -5.8 spermidine/putrescine ABC transporter ATP-binding subunit compare
Psest_3659 -1.4 -1.8 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2150 -1.4 -1.3 DNA polymerase LigD, polymerase domain compare
Psest_0138 -1.4 -5.5 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_1863 -1.4 -0.9 hypothetical protein compare
Psest_4307 -1.4 -1.8 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_3398 -1.4 -2.6 large conductance mechanosensitive channel protein compare
Psest_1215 -1.4 -1.4 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) compare
Psest_1592 -1.4 -2.4 hypothetical protein compare
Psest_3145 -1.4 -0.8 hypothetical protein compare
Psest_0640 -1.4 -3.5 Uncharacterized conserved protein compare
Psest_1391 -1.4 -3.0 ABC-type uncharacterized transport system, permease component compare
Psest_0193 -1.4 -0.7 conserved hypothetical protein compare
Psest_1625 -1.4 -1.4 hypothetical protein compare
Psest_1888 -1.4 -0.5 Sua5/YciO/YrdC/YwlC family protein compare
Psest_0181 -1.4 -3.7 glycine cleavage system T protein compare
Psest_0969 -1.4 -1.2 transcription elongation factor GreA compare
Psest_2946 -1.4 -2.5 septum site-determining protein MinD compare
Psest_3823 -1.3 -2.2 hypothetical protein compare
Psest_1532 -1.3 -2.2 DNA recombination-dependent growth factor C compare
Psest_0505 -1.3 -2.5 Putative effector of murein hydrolase compare
Psest_2367 -1.3 -4.0 glutamine synthetase, type III compare
Psest_1242 -1.3 -1.4 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_1660 -1.3 -0.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_2308 -1.3 -0.7 Predicted Fe-S protein compare
Psest_4201 -1.3 -1.2 general secretion pathway protein F compare
Psest_1288 -1.3 -4.0 Putative multicopper oxidases compare
Psest_1840 -1.3 -7.7 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_1468 -1.3 -1.6 hypothetical protein compare
Psest_0790 -1.3 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_2136 -1.3 -3.8 Predicted homoserine dehydrogenase compare
Psest_0069 -1.3 -2.9 UDP-glucose-4-epimerase compare
Psest_0757 -1.3 -1.9 hypothetical protein compare
Psest_3735 -1.3 -0.9 uncharacterized domain 1 compare
Psest_3497 -1.3 -2.6 Predicted metalloprotease compare
Psest_4350 -1.3 -3.1 Transcriptional regulators of sugar metabolism compare
Psest_0678 -1.3 -1.8 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_2557 -1.3 -1.1 Protein of unknown function (DUF2474). compare
Psest_1479 -1.3 -1.7 NAD(P)H:quinone oxidoreductase, type IV compare
Psest_2651 -1.3 -1.9 DNA topoisomerase I, bacterial compare
Psest_4100 -1.3 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_1390 -1.2 -2.0 Uncharacterized ABC-type transport system, permease component compare
Psest_1159 -1.2 -2.3 Uncharacterized iron-regulated protein compare
Psest_3447 -1.2 -0.8 Uncharacterized MobA-related protein compare
Psest_1147 -1.2 -1.5 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2711 -1.2 -0.9 PilZ domain. compare
Psest_2232 -1.2 -5.6 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_0719 -1.2 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_1444 -1.2 -2.5 Curli production assembly/transport component CsgF. compare
Psest_0846 -1.2 -1.4 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_2716 -1.2 -1.2 ABC-type multidrug transport system, ATPase component compare
Psest_3339 -1.2 -3.6 Signal transduction histidine kinase compare
Psest_1227 -1.2 -1.2 Predicted SAM-dependent methyltransferase compare
Psest_0414 -1.2 -1.4 biotin biosynthesis protein BioC compare
Psest_2961 -1.2 -2.3 Flagellar basal-body P-ring protein compare
Psest_0823 -1.2 -1.2 Transcriptional regulators compare
Psest_3050 -1.2 -1.6 tRNA_Gly_CCC compare


Specific Phenotypes

For 8 genes in this experiment