Experiment set15H43 for Pseudomonas stutzeri RCH2

RCH2 grown on a colony of N2C3

Group:
Media:
Culturing: psRCH2_ML7c
By: Peter Rademacher on

Specific Phenotypes

For 8 genes in this experiment

SEED Subsystems

Subsystem	#Specific
Folate Biosynthesis	2
Polyamine Metabolism	2
Coenzyme B12 biosynthesis	1
Methionine Biosynthesis	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• One carbon pool by folate
• Pentose and glucuronate interconversions
• Biosynthesis of steroids
• Methionine metabolism
• Tryptophan metabolism
• Lipopolysaccharide biosynthesis
• Methane metabolism
• Folate biosynthesis
• Carotenoid biosynthesis - General
• Biosynthesis of phenylpropanoids
• Biosynthesis of alkaloids derived from terpenoid and polyketide

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
tetrahydromonapterin biosynthesis	4	3	2
dTMP de novo biosynthesis (mitochondrial)	3	3	1
tetrahydrofolate biosynthesis I	3	3	1
L-methionine salvage from L-homocysteine	3	1	1
L-methionine biosynthesis III	4	4	1
folate transformations III (E. coli)	9	9	2
L-methionine biosynthesis I	5	3	1
folate transformations II (plants)	11	10	2
superpathway of L-homoserine and L-methionine biosynthesis	8	6	1
superpathway of L-methionine biosynthesis (transsulfuration)	9	7	1
superpathway of S-adenosyl-L-methionine biosynthesis	9	7	1
superpathway of tetrahydrofolate biosynthesis	10	8	1
superpathway of L-methionine biosynthesis (by sulfhydrylation)	12	12	1
superpathway of tetrahydrofolate biosynthesis and salvage	12	10	1
folate transformations I	13	9	1
superpathway of L-methionine salvage and degradation	16	5	1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis I	18	16	1
aspartate superpathway	25	22	1
superpathway of chorismate metabolism	59	44	1