Experiment set15H42 for Pseudomonas stutzeri RCH2

Compare to:

RCH2 grown on a colony of N2F3

200 most important genes:

  gene name fitness t score description  
Psest_3148 -5.4 -0.8 hypothetical protein compare
Psest_2025 -5.2 -0.8 cold shock domain protein CspD compare
Psest_0737 -5.1 -0.8 Cu(I)-responsive transcriptional regulator compare
Psest_2101 -5.1 -1.4 hypothetical protein compare
Psest_2088 -5.1 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_1974 -5.1 -1.9 integration host factor, alpha subunit compare
Psest_2424 -4.9 -1.1 K+ transport systems, NAD-binding component compare
Psest_1540 -4.4 -1.2 biotin-dependent carboxylase uncharacterized domain compare
Psest_0164 -4.3 -0.7 Glutaredoxin, GrxC family compare
Psest_2637 -4.3 -0.9 putative methyltransferase, YaeB/AF_0241 family compare
Psest_3039 -4.1 -1.1 periplasmic nitrate reductase, NapE protein compare
Psest_1306 -4.1 -1.3 hypothetical protein compare
Psest_3828 -3.9 -0.9 zinc-binding alcohol dehydrogenase family protein compare
Psest_2304 -3.8 -0.6 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_4280 -3.7 -3.8 ABC-type spermidine/putrescine transport system, permease component II compare
Psest_2581 -3.7 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_3047 -3.6 -0.8 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_1805 -3.6 -1.1 integration host factor, beta subunit compare
Psest_0708 -3.6 -1.1 outer membrane assembly lipoprotein YfiO compare
Psest_2333 -3.5 -0.8 Protein of unknown function (DUF3359). compare
Psest_1542 -3.4 -5.2 Uncharacterized proteins, homologs of lactam utilization protein B compare
Psest_0520 -3.4 -0.5 hypothetical protein compare
Psest_4134 -3.4 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_2809 -3.4 -2.5 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_1539 -3.4 -9.7 Mn2+ and Fe2+ transporters of the NRAMP family compare
Psest_4335 -3.3 -1.2 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_0845 -3.2 -0.7 hypothetical protein compare
Psest_1679 -3.2 -1.4 ribonuclease, Rne/Rng family compare
Psest_0558 -3.2 -0.7 urease, beta subunit compare
Psest_3129 -3.2 -1.0 tyrosine recombinase XerD compare
Psest_0498 -3.0 -0.8 ribosome small subunit-dependent GTPase A compare
Psest_1087 -2.9 -0.9 uncharacterized peroxidase-related enzyme compare
Psest_1541 -2.9 -7.1 TIGR00370 family protein compare
Psest_3113 -2.8 -1.0 electron transport complex, RnfABCDGE type, B subunit compare
Psest_0759 -2.7 -1.2 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_4298 -2.7 -0.8 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_0609 -2.6 -1.0 hypothetical protein compare
Psest_4287 -2.6 -5.3 Predicted glutamine amidotransferases compare
Psest_4406 -2.6 -1.9 hypothetical protein compare
Psest_2316 -2.6 -10.7 phosphoenolpyruvate synthase compare
Psest_3270 -2.6 -1.9 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_2953 -2.6 -1.4 Histone acetyltransferase compare
Psest_2899 -2.6 -1.0 hypothetical protein compare
Psest_3391 -2.6 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_3070 -2.6 -1.9 3-oxoadipyl-CoA thiolase compare
Psest_4219 -2.5 -1.3 DNA polymerase I compare
Psest_2232 -2.5 -10.1 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_4282 -2.5 -8.5 spermidine/putrescine ABC transporter ATP-binding subunit compare
Psest_2651 -2.5 -2.5 DNA topoisomerase I, bacterial compare
Psest_0970 -2.5 -1.5 hypothetical protein compare
Psest_2532 -2.4 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_4201 -2.4 -1.9 general secretion pathway protein F compare
Psest_4284 -2.4 -9.8 Spermidine/putrescine-binding periplasmic protein compare
Psest_4310 -2.4 -0.8 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_2901 -2.3 -1.1 hypothetical protein compare
Psest_2585 -2.3 -0.7 pseudouridylate synthase I compare
Psest_1496 -2.3 -0.6 Holliday junction DNA helicase, RuvA subunit compare
Psest_1819 -2.3 -10.2 Nucleoside-diphosphate-sugar epimerases compare
Psest_0259 -2.3 -0.8 cell division ATP-binding protein FtsE compare
Psest_0284 -2.3 -8.8 pyridoxal phosphate enzyme, YggS family compare
Psest_1159 -2.2 -5.3 Uncharacterized iron-regulated protein compare
Psest_3137 -2.2 -5.6 phosphoribosylglycinamide formyltransferase 2 compare
Psest_2988 -2.2 -5.0 aspartate kinase, monofunctional class compare
Psest_1230 -2.2 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_0505 -2.1 -3.1 Putative effector of murein hydrolase compare
Psest_1486 -2.1 -2.5 hypothetical protein compare
Psest_0999 -2.1 -1.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4128 -2.1 -1.1 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_1752 -2.1 -1.2 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_2066 -2.1 -1.0 ABC-type uncharacterized transport system, permease component compare
Psest_1012 -2.0 -3.5 Signal transduction histidine kinase compare
Psest_0209 -2.0 -1.3 membrane protein AbrB duplication compare
Psest_0309 -2.0 -0.5 RND family efflux transporter, MFP subunit compare
Psest_4274 -2.0 -1.3 hypothetical protein compare
Psest_1056 -2.0 -1.1 2-isopropylmalate synthase, bacterial type compare
Psest_0357 -1.9 -1.6 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_4191 -1.9 -2.8 Transcriptional regulator compare
Psest_3816 -1.9 -0.7 DNA-directed RNA polymerase, omega subunit compare
Psest_0575 -1.9 -0.5 HrpA-like helicases compare
Psest_4281 -1.9 -7.0 ABC-type spermidine/putrescine transport system, permease component I compare
Psest_2520 -1.9 -1.1 Predicted SAM-dependent methyltransferase compare
Psest_3185 -1.9 -1.1 MoxR-like ATPases compare
Psest_3415 -1.9 -10.1 hypothetical protein compare
Psest_4010 -1.8 -0.8 peroxiredoxin, OsmC subfamily compare
Psest_3721 -1.8 -3.7 Malic enzyme compare
Psest_1271 -1.8 -3.0 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family compare
Psest_2646 -1.8 -1.4 SOS regulatory protein LexA compare
Psest_2872 -1.8 -1.3 protein RecA compare
Psest_2768 -1.8 -1.6 Kef-type K+ transport systems, predicted NAD-binding component compare
Psest_2634 -1.8 -2.8 glycine betaine aldehyde dehydrogenase compare
Psest_0466 -1.8 -2.1 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3707 -1.8 -1.3 Transcriptional regulator compare
Psest_2724 -1.8 -2.2 hypothetical protein compare
Psest_3174 -1.8 -6.5 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_3937 -1.8 -1.3 ATP-dependent protease HslVU, ATPase subunit compare
Psest_1414 -1.7 -4.0 Lactoylglutathione lyase and related lyases compare
Psest_3343 -1.7 -1.8 Predicted periplasmic protein compare
Psest_1656 -1.7 -0.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_2243 -1.7 -0.6 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_3767 -1.7 -3.6 tyrosine recombinase XerC compare
Psest_0310 -1.7 -1.0 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_3792 -1.6 -1.6 Putative translation initiation inhibitor, yjgF family compare
Psest_0889 -1.6 -3.4 Lactoylglutathione lyase and related lyases compare
Psest_0181 -1.6 -4.2 glycine cleavage system T protein compare
Psest_0449 -1.6 -5.6 Glutamine synthetase adenylyltransferase compare
Psest_2130 -1.6 -1.6 exodeoxyribonuclease III compare
Psest_2037 -1.6 -3.3 uroporphyrin-III C-methyltransferase compare
Psest_3204 -1.6 -3.1 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1840 -1.6 -9.4 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_1660 -1.6 -0.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0138 -1.5 -4.7 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_3205 -1.5 -4.0 FolB domain compare
Psest_3170 -1.5 -3.0 molybdenum cofactor biosynthesis protein MoaC compare
Psest_3700 -1.5 -0.7 hypothetical protein compare
Psest_1361 -1.5 -3.4 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
Psest_1762 -1.5 -1.2 cytochrome c-type biogenesis protein CcmI compare
Psest_3400 -1.5 -0.7 Copper resistance protein D. compare
Psest_3648 -1.5 -3.9 anthranilate phosphoribosyltransferase compare
Psest_0655 -1.5 -1.2 Chemotaxis signal transduction protein compare
Psest_3450 -1.5 -3.4 Permeases compare
Psest_2793 -1.5 -1.3 hypothetical protein compare
Psest_2011 -1.5 -5.0 Predicted permease compare
Psest_3455 -1.5 -1.5 Dihaem cytochrome c. compare
Psest_1574 -1.5 -1.7 phenazine biosynthesis protein PhzF family compare
Psest_1745 -1.4 -2.8 Flagellar motor component compare
Psest_3409 -1.4 -3.1 hypothetical protein compare
Psest_2771 -1.4 -1.3 Predicted membrane protein compare
Psest_4342 -1.4 -2.0 Putative GTPases (G3E family) compare
Psest_0095 -1.4 -2.0 phosphonate C-P lyase system protein PhnH compare
Psest_0484 -1.4 -2.4 hypothetical protein compare
Psest_2048 -1.4 -1.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2104 -1.4 -0.7 IscR-regulated protein YhgI compare
Psest_1071 -1.4 -4.6 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains compare
Psest_1167 -1.4 -0.6 hypothetical protein compare
Psest_1160 -1.4 -2.2 Uncharacterized conserved protein compare
Psest_3732 -1.4 -4.2 polyphosphate kinase 1 compare
Psest_0028 -1.4 -2.8 Coproporphyrinogen III oxidase compare
Psest_1642 -1.4 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_2136 -1.4 -4.4 Predicted homoserine dehydrogenase compare
Psest_0740 -1.4 -1.1 Transcriptional regulator compare
Psest_0311 -1.4 -3.2 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_2134 -1.4 -6.5 amino acid carrier protein compare
Psest_2680 -1.3 -2.6 transcriptional regulator, BolA protein family compare
Psest_2708 -1.3 -4.0 transaldolase compare
Psest_2892 -1.3 -1.4 Transcriptional regulator compare
Psest_0785 -1.3 -1.4 Thioredoxin reductase compare
Psest_1815 -1.3 -5.7 pseudaminic acid synthase compare
Psest_0851 -1.3 -5.3 Transcriptional regulators compare
Psest_3511 -1.3 -3.2 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
Psest_3290 -1.3 -4.1 prepilin-type N-terminal cleavage/methylation domain compare
Psest_2939 -1.3 -2.3 Predicted membrane protein compare
Psest_3178 -1.3 -1.5 formyltetrahydrofolate deformylase compare
Psest_2449 -1.3 -4.2 Predicted membrane protein compare
Psest_1428 -1.3 -1.5 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
Psest_0725 -1.3 -1.2 Negative regulator of beta-lactamase expression compare
Psest_1772 -1.3 -2.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1213 -1.3 -4.5 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein compare
Psest_3931 -1.3 -1.9 Signal transduction histidine kinase, nitrogen specific compare
Psest_1606 -1.3 -2.7 hypothetical protein compare
Psest_0015 -1.3 -1.1 Tetratricopeptide repeat. compare
Psest_2945 -1.2 -0.8 septum site-determining protein MinC compare
Psest_0958 -1.2 -3.7 Oligoketide cyclase/lipid transport protein compare
Psest_3363 -1.2 -2.0 hypothetical protein compare
Psest_3784 -1.2 -1.3 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_1456 -1.2 -1.5 Protein of unknown function (DUF2892). compare
Psest_1434 -1.2 -1.7 NADPH:quinone reductase and related Zn-dependent oxidoreductases compare
Psest_1199 -1.2 -2.0 OHCU decarboxylase compare
Psest_4098 -1.2 -1.4 Superfamily I DNA and RNA helicases compare
Psest_0013 -1.2 -2.5 Lauroyl/myristoyl acyltransferase compare
Psest_1837 -1.2 -3.3 Endoglucanase compare
Psest_0507 -1.2 -3.1 Uncharacterized membrane-associated protein compare
Psest_2624 -1.2 -1.5 hypothetical protein compare
Psest_2383 -1.2 -3.9 Predicted transcriptional regulators compare
Psest_0998 -1.2 -1.2 poly(A) polymerase compare
Psest_1655 -1.2 -1.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_1813 -1.2 -4.3 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_0747 -1.2 -2.4 Putative GTPases (G3E family) compare
Psest_1366 -1.2 -0.9 hypothetical protein compare
Psest_0082 -1.2 -1.4 Domain of unknown function (DUF892). compare
Psest_1602 -1.1 -1.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2035 -1.1 -2.0 crcB protein compare
Psest_2434 -1.1 -1.4 Protein of unknown function (DUF2892). compare
Psest_2621 -1.1 -2.1 TadE-like protein. compare
Psest_2260 -1.1 -7.0 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_4303 -1.1 -1.0 HEAT repeat. compare
Psest_0237 -1.1 -1.1 intracellular protease, PfpI family compare
Psest_1824 -1.1 -1.6 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_1998 -1.1 -1.4 Entner-Doudoroff aldolase compare
Psest_4133 -1.1 -3.3 RNA polymerase sigma factor, sigma-70 family compare
Psest_1872 -1.1 -1.4 selT/selW/selH selenoprotein domain compare
Psest_1814 -1.1 -6.1 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0086 -1.1 -1.0 hypothetical protein compare
Psest_1302 -1.1 -2.1 Predicted thioesterase compare
Psest_1388 -1.1 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_2238 -1.1 -1.4 hypothetical protein compare
Psest_2590 -1.1 -0.6 3-isopropylmalate dehydratase, small subunit compare
Psest_0064 -1.1 -1.2 Transcriptional regulator compare
Psest_1295 -1.1 -3.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2873 -1.1 -2.3 competence/damage-inducible protein CinA C-terminal domain compare
Psest_3416 -1.1 -3.8 Predicted ATPase (AAA+ superfamily) compare


Specific Phenotypes

For 11 genes in this experiment