Experiment set15H42 for Pseudomonas stutzeri RCH2

Compare to:

RCH2 grown on a colony of N2F3

Group:
Media:
Culturing: psRCH2_ML7c
By: Peter Rademacher on

Specific Phenotypes

For 11 genes in this experiment

SEED Subsystems

Subsystem #Specific
Polyamine Metabolism 3
Coenzyme B12 biosynthesis 1
De Novo Purine Biosynthesis 1
Methionine Biosynthesis 1
Transport of Iron 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
urea degradation I 3 3 2
acetate and ATP formation from acetyl-CoA I 2 2 1
tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate 2 2 1
glycine degradation (reductive Stickland reaction) 2 1 1
cyanuric acid degradation II 5 4 2
cyanuric acid degradation I 5 2 2
superpathway of 5-aminoimidazole ribonucleotide biosynthesis 6 6 2
cyanate degradation 3 3 1
L-citrulline degradation 3 3 1
pyruvate fermentation to acetate II 3 3 1
superpathway of acetate utilization and formation 3 3 1
superpathway of allantoin degradation in yeast 6 5 2
pyruvate fermentation to acetate IV 3 2 1
pyruvate fermentation to acetate I 3 2 1
pyruvate fermentation to acetate VII 3 2 1
L-methionine salvage from L-homocysteine 3 1 1
L-arginine degradation V (arginine deiminase pathway) 4 4 1
pyruvate fermentation to acetate and (S)-lactate I 4 4 1
L-methionine biosynthesis III 4 4 1
pyruvate fermentation to acetate and lactate II 4 3 1
superpathway of atrazine degradation 8 4 2
ethanolamine utilization 5 5 1
5-aminoimidazole ribonucleotide biosynthesis I 5 5 1
5-aminoimidazole ribonucleotide biosynthesis II 5 5 1
acetylene degradation (anaerobic) 5 4 1
L-methionine biosynthesis I 5 3 1
uracil degradation III 5 2 1
methanogenesis from acetate 6 2 1
acetyl-CoA fermentation to butanoate 7 4 1
superpathway of L-homoserine and L-methionine biosynthesis 8 6 1
lactate fermentation to acetate, CO2 and hydrogen (Desulfovibrionales) 8 3 1
folate transformations III (E. coli) 9 9 1
superpathway of L-methionine biosynthesis (transsulfuration) 9 7 1
superpathway of S-adenosyl-L-methionine biosynthesis 9 7 1
superpathway of fermentation (Chlamydomonas reinhardtii) 9 5 1
superpathway of Clostridium acetobutylicum acidogenic fermentation 9 5 1
reductive glycine pathway of autotrophic CO2 fixation 9 5 1
superpathway of L-alanine fermentation (Stickland reaction) 9 4 1
allantoin degradation IV (anaerobic) 9 2 1
L-lysine fermentation to acetate and butanoate 10 3 1
folate transformations II (plants) 11 10 1
gallate degradation III (anaerobic) 11 5 1
superpathway of L-methionine biosynthesis (by sulfhydrylation) 12 12 1
superpathway of tetrahydrofolate biosynthesis and salvage 12 10 1
folate transformations I 13 9 1
(S)-lactate fermentation to propanoate, acetate and hydrogen 13 5 1
Bifidobacterium shunt 15 15 1
purine nucleobases degradation I (anaerobic) 15 6 1
mixed acid fermentation 16 12 1
superpathway of L-methionine salvage and degradation 16 5 1
superpathway of Clostridium acetobutylicum acidogenic and solventogenic fermentation 17 8 1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis I 18 16 1
hexitol fermentation to lactate, formate, ethanol and acetate 19 16 1
superpathway of purine nucleotides de novo biosynthesis I 21 21 1
superpathway of methanogenesis 21 2 1
superpathway of N-acetylneuraminate degradation 22 14 1
purine nucleobases degradation II (anaerobic) 24 16 1
aspartate superpathway 25 22 1
superpathway of purine nucleotides de novo biosynthesis II 26 24 1
superpathway of L-lysine degradation 43 11 1
superpathway of histidine, purine, and pyrimidine biosynthesis 46 44 1