Experiment set15H41 for Pseudomonas stutzeri RCH2

Compare to:

RCH2 grown on a colony of N2F3

200 most important genes:

  gene name fitness t score description  
Psest_2590 -5.4 -0.9 3-isopropylmalate dehydratase, small subunit compare
Psest_0558 -4.6 -0.8 urease, beta subunit compare
Psest_1540 -4.4 -1.3 biotin-dependent carboxylase uncharacterized domain compare
Psest_1306 -4.0 -1.4 hypothetical protein compare
Psest_2122 -4.0 -1.0 Parvulin-like peptidyl-prolyl isomerase compare
Psest_2304 -3.9 -0.7 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_3960 -3.9 -1.1 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_3531 -3.7 -1.1 Peptidase propeptide and YPEB domain. compare
Psest_3850 -3.7 -0.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3518 -3.6 -0.9 Transcriptional regulators compare
Psest_1805 -3.6 -1.2 integration host factor, beta subunit compare
Psest_3270 -3.6 -1.6 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_1322 -3.5 -1.7 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_2744 -3.5 -1.1 Uncharacterized conserved protein compare
Psest_1230 -3.4 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_3546 -3.4 -0.8 Phosphatidylglycerophosphatase A and related proteins compare
Psest_3301 -3.4 -1.2 Predicted transcriptional regulator, BolA superfamily compare
Psest_2766 -3.3 -0.8 hypothetical protein compare
Psest_4010 -3.3 -0.8 peroxiredoxin, OsmC subfamily compare
Psest_4335 -3.2 -1.3 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_1541 -3.1 -9.0 TIGR00370 family protein compare
Psest_2067 -3.1 -1.0 ABC-type oligopeptide transport system, periplasmic component compare
Psest_1313 -3.0 -1.5 Uncharacterized conserved small protein compare
Psest_1741 -2.9 -1.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1542 -2.9 -5.8 Uncharacterized proteins, homologs of lactam utilization protein B compare
Psest_3222 -2.7 -2.4 Putative threonine efflux protein compare
Psest_2911 -2.7 -1.3 Protein of unknown function (DUF2945). compare
Psest_1643 -2.7 -0.9 hypothetical protein compare
Psest_4405 -2.7 -1.9 hypothetical protein compare
Psest_0737 -2.7 -0.9 Cu(I)-responsive transcriptional regulator compare
Psest_2532 -2.6 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_2316 -2.6 -10.7 phosphoenolpyruvate synthase compare
Psest_2988 -2.4 -5.5 aspartate kinase, monofunctional class compare
Psest_4281 -2.4 -10.9 ABC-type spermidine/putrescine transport system, permease component I compare
Psest_4280 -2.4 -2.9 ABC-type spermidine/putrescine transport system, permease component II compare
Psest_4284 -2.4 -9.5 Spermidine/putrescine-binding periplasmic protein compare
Psest_3137 -2.4 -4.7 phosphoribosylglycinamide formyltransferase 2 compare
Psest_2945 -2.3 -0.9 septum site-determining protein MinC compare
Psest_4303 -2.3 -1.5 HEAT repeat. compare
Psest_3148 -2.3 -0.9 hypothetical protein compare
Psest_1752 -2.3 -1.3 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_1496 -2.3 -0.6 Holliday junction DNA helicase, RuvA subunit compare
Psest_3732 -2.3 -6.2 polyphosphate kinase 1 compare
Psest_0114 -2.3 -1.4 RNA polymerase sigma factor, sigma-70 family compare
Psest_2018 -2.3 -1.7 Uncharacterized conserved protein compare
Psest_1185 -2.2 -1.8 heavy metal response regulator compare
Psest_0284 -2.2 -10.2 pyridoxal phosphate enzyme, YggS family compare
Psest_0209 -2.2 -1.5 membrane protein AbrB duplication compare
Psest_2561 -2.2 -0.7 hypothetical protein compare
Psest_2539 -2.2 -1.9 adenine phosphoribosyltransferase compare
Psest_1392 -2.2 -2.4 ABC-type uncharacterized transport systems, ATPase components compare
Psest_0466 -2.1 -2.2 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_1539 -2.1 -5.2 Mn2+ and Fe2+ transporters of the NRAMP family compare
Psest_0845 -2.1 -0.7 hypothetical protein compare
Psest_0862 -2.1 -3.8 Glycosidases compare
Psest_1974 -2.1 -2.4 integration host factor, alpha subunit compare
Psest_3174 -2.1 -8.3 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_0449 -2.1 -7.5 Glutamine synthetase adenylyltransferase compare
Psest_0346 -2.1 -2.4 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_0191 -2.0 -0.9 PAS domain S-box compare
Psest_4282 -2.0 -7.0 spermidine/putrescine ABC transporter ATP-binding subunit compare
Psest_2454 -2.0 -1.7 Rhodanese-related sulfurtransferase compare
Psest_3648 -2.0 -5.6 anthranilate phosphoribosyltransferase compare
Psest_3962 -2.0 -1.0 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_1551 -2.0 -2.6 Integral membrane protein, interacts with FtsH compare
Psest_1877 -2.0 -2.0 AraC-type DNA-binding domain-containing proteins compare
Psest_0139 -1.9 -3.8 ABC-type histidine transport system, ATPase component compare
Psest_2448 -1.9 -2.6 AraC-type DNA-binding domain-containing proteins compare
Psest_3437 -1.9 -2.2 diguanylate cyclase (GGDEF) domain compare
Psest_4278 -1.9 -2.2 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_0243 -1.9 -1.0 hypothetical protein compare
Psest_1498 -1.9 -1.9 tol-pal system-associated acyl-CoA thioesterase compare
Psest_3767 -1.9 -3.9 tyrosine recombinase XerC compare
Psest_4211 -1.9 -2.9 conserverd hypothetical protein compare
Psest_0165 -1.9 -1.9 protein-export chaperone SecB compare
Psest_2757 -1.9 -0.8 hypothetical protein compare
Psest_2000 -1.9 -2.8 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3519 -1.9 -1.3 Uncharacterized conserved protein compare
Psest_4052 -1.9 -3.5 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_1819 -1.8 -9.2 Nucleoside-diphosphate-sugar epimerases compare
Psest_2088 -1.8 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_2885 -1.8 -1.6 Acyl carrier protein compare
Psest_3226 -1.8 -0.8 Predicted membrane protein compare
Psest_1656 -1.8 -0.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_3146 -1.8 -1.4 hypothetical protein compare
Psest_1582 -1.8 -2.3 Protein of unknown function (DUF3087). compare
Psest_3205 -1.8 -3.6 FolB domain compare
Psest_0115 -1.7 -0.8 Predicted integral membrane protein compare
Psest_3204 -1.7 -3.6 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0013 -1.7 -3.7 Lauroyl/myristoyl acyltransferase compare
Psest_2150 -1.7 -1.3 DNA polymerase LigD, polymerase domain compare
Psest_1111 -1.7 -2.0 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_1622 -1.7 -3.1 hypothetical protein compare
Psest_3745 -1.7 -2.4 Uncharacterized enzyme of heme biosynthesis compare
Psest_0851 -1.7 -6.7 Transcriptional regulators compare
Psest_0078 -1.7 -0.7 hypothetical protein compare
Psest_1468 -1.7 -1.4 hypothetical protein compare
Psest_3317 -1.7 -3.2 Phosphotransferase System HPr (HPr) Family compare
Psest_0734 -1.7 -2.2 RND family efflux transporter, MFP subunit compare
Psest_0136 -1.7 -6.7 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_4170 -1.7 -0.9 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_1162 -1.7 -1.8 Spermidine synthase compare
Psest_2136 -1.7 -5.9 Predicted homoserine dehydrogenase compare
Psest_4287 -1.6 -4.1 Predicted glutamine amidotransferases compare
Psest_0257 -1.6 -2.4 Predicted Zn-dependent peptidases compare
Psest_2066 -1.6 -1.1 ABC-type uncharacterized transport system, permease component compare
Psest_0083 -1.6 -1.4 Uncharacterized conserved protein compare
Psest_1660 -1.6 -0.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_2238 -1.6 -2.2 hypothetical protein compare
Psest_0193 -1.6 -1.0 conserved hypothetical protein compare
Psest_1814 -1.6 -9.5 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2591 -1.6 -1.8 3-isopropylmalate dehydratase, large subunit compare
Psest_1417 -1.6 -1.0 hypothetical protein compare
Psest_1424 -1.6 -1.8 Lipoate-protein ligase A compare
Psest_0837 -1.6 -1.8 Putative lipid carrier protein compare
Psest_3735 -1.6 -1.2 uncharacterized domain 1 compare
Psest_0673 -1.6 -2.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_1773 -1.6 -2.4 methionine-R-sulfoxide reductase compare
Psest_3562 -1.6 -2.1 ABC-type antimicrobial peptide transport system, ATPase component compare
Psest_0398 -1.5 -4.3 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_1157 -1.5 -2.6 Predicted periplasmic lipoprotein compare
Psest_3203 -1.5 -3.1 hypothetical protein compare
Psest_0028 -1.5 -3.0 Coproporphyrinogen III oxidase compare
Psest_4305 -1.5 -4.0 NAD-dependent aldehyde dehydrogenases compare
Psest_3884 -1.5 -0.5 Signal transduction histidine kinase compare
Psest_0237 -1.5 -2.3 intracellular protease, PfpI family compare
Psest_0021 -1.5 -3.0 ribosomal RNA small subunit methyltransferase RsmB compare
Psest_3991 -1.5 -1.6 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Psest_3816 -1.5 -0.6 DNA-directed RNA polymerase, omega subunit compare
Psest_0311 -1.5 -3.5 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_2240 -1.5 -1.1 hypothetical protein compare
Psest_3177 -1.5 -1.2 hypothetical protein compare
Psest_4274 -1.5 -1.0 hypothetical protein compare
Psest_0260 -1.5 -0.9 Cell division protein compare
Psest_0181 -1.5 -3.3 glycine cleavage system T protein compare
Psest_4191 -1.4 -2.1 Transcriptional regulator compare
Psest_2520 -1.4 -1.1 Predicted SAM-dependent methyltransferase compare
Psest_2285 -1.4 -2.6 ATP-dependent protease La compare
Psest_1989 -1.4 -3.4 Transcriptional regulators compare
Psest_0138 -1.4 -5.4 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_0119 -1.4 -1.5 hypothetical protein compare
Psest_3422 -1.4 -3.0 hypothetical protein compare
Psest_2775 -1.4 -1.0 Glycerol-3-phosphate dehydrogenase compare
Psest_0537 -1.4 -1.3 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_4285 -1.4 -3.8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Psest_4090 -1.4 -3.0 diaminobutyrate acetyltransferase compare
Psest_4301 -1.4 -3.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2974 -1.4 -3.6 Predicted glycosyltransferase compare
Psest_2651 -1.4 -2.4 DNA topoisomerase I, bacterial compare
Psest_3496 -1.4 -0.9 Predicted metal-binding protein compare
Psest_4276 -1.4 -1.7 hypothetical protein compare
Psest_2726 -1.4 -0.9 Rhodanese-related sulfurtransferase compare
Psest_2384 -1.3 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_2901 -1.3 -1.2 hypothetical protein compare
Psest_1592 -1.3 -2.6 hypothetical protein compare
Psest_3871 -1.3 -2.5 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) compare
Psest_0089 -1.3 -3.4 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN compare
Psest_1142 -1.3 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_1457 -1.3 -0.9 FOG: Ankyrin repeat compare
Psest_0959 -1.3 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_1628 -1.3 -2.4 hypothetical protein compare
Psest_2343 -1.3 -1.8 Mg-dependent DNase compare
Psest_0852 -1.3 -2.0 glucose-6-phosphate 1-dehydrogenase compare
Psest_0857 -1.3 -1.1 Membrane transporters of cations and cationic drugs compare
Psest_1152 -1.3 -2.7 hypothetical protein compare
Psest_0415 -1.3 -2.2 dethiobiotin synthase compare
Psest_2232 -1.3 -6.8 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_4341 -1.3 -2.9 hypothetical protein compare
Psest_0998 -1.3 -1.7 poly(A) polymerase compare
Psest_0716 -1.3 -1.4 Protein of unknown function (DUF3094). compare
Psest_2126 -1.3 -2.4 Transcriptional regulators compare
Psest_3653 -1.3 -3.1 4-aminobutyrate aminotransferase, prokaryotic type compare
Psest_1613 -1.3 -3.0 hypothetical protein compare
Psest_0414 -1.3 -1.4 biotin biosynthesis protein BioC compare
Psest_3462 -1.3 -2.9 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0759 -1.3 -1.0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_2383 -1.3 -4.7 Predicted transcriptional regulators compare
Psest_3973 -1.3 -0.8 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_1884 -1.3 -1.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1079 -1.3 -2.6 Isopropylmalate/homocitrate/citramalate synthases compare
Psest_1879 -1.3 -1.6 Trk-type K+ transport systems, membrane components compare
Psest_3206 -1.3 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_4154 -1.3 -2.6 flagella basal body P-ring formation protein FlgA compare
Psest_3438 -1.3 -3.6 Glutamate dehydrogenase/leucine dehydrogenase compare
Psest_0192 -1.3 -5.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1881 -1.3 -1.7 Nitroreductase compare
Psest_1451 -1.3 -1.9 Uncharacterized ABC-type transport system, permease components compare
Psest_1391 -1.2 -2.2 ABC-type uncharacterized transport system, permease component compare
Psest_0498 -1.2 -0.8 ribosome small subunit-dependent GTPase A compare
Psest_3788 -1.2 -2.2 xanthine phosphoribosyltransferase compare
Psest_2872 -1.2 -1.0 protein RecA compare
Psest_2011 -1.2 -5.1 Predicted permease compare
Psest_2020 -1.2 -2.4 Uncharacterized protein involved in purine metabolism compare
Psest_0950 -1.2 -2.3 hypothetical protein compare
Psest_0867 -1.2 -0.7 hypothetical protein compare
Psest_2025 -1.2 -0.6 cold shock domain protein CspD compare
Psest_2896 -1.2 -2.8 hypothetical protein compare
Psest_4135 -1.2 -2.8 Ketosteroid isomerase homolog compare
Psest_0547 -1.2 -1.6 Urease accessory protein UreF compare
Psest_3069 -1.2 -1.5 3-oxoadipate enol-lactonase compare


Specific Phenotypes

For 9 genes in this experiment