Experiment set15H41 for Pseudomonas stutzeri RCH2

RCH2 grown on a colony of N2F3

Group:
Media:
Culturing: psRCH2_ML7c
By: Peter Rademacher on

Specific Phenotypes

For 9 genes in this experiment

SEED Subsystems

Subsystem	#Specific
Polyamine Metabolism	3
Coenzyme B12 biosynthesis	1
Methionine Biosynthesis	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Urea cycle and metabolism of amino groups
• Purine metabolism
• Methionine metabolism
• Arginine and proline metabolism
• One carbon pool by folate
• Atrazine degradation

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
urea degradation I	3	3	2
cyanuric acid degradation II	5	4	2
cyanuric acid degradation I	5	2	2
cyanate degradation	3	3	1
L-citrulline degradation	3	3	1
superpathway of allantoin degradation in yeast	6	5	2
L-methionine salvage from L-homocysteine	3	1	1
L-arginine degradation V (arginine deiminase pathway)	4	4	1
L-methionine biosynthesis III	4	4	1
superpathway of atrazine degradation	8	4	2
L-methionine biosynthesis I	5	3	1
uracil degradation III	5	2	1
superpathway of L-homoserine and L-methionine biosynthesis	8	6	1
folate transformations III (E. coli)	9	9	1
superpathway of S-adenosyl-L-methionine biosynthesis	9	7	1
superpathway of L-methionine biosynthesis (transsulfuration)	9	7	1
allantoin degradation IV (anaerobic)	9	2	1
folate transformations II (plants)	11	10	1
superpathway of L-methionine biosynthesis (by sulfhydrylation)	12	12	1
folate transformations I	13	9	1
superpathway of L-methionine salvage and degradation	16	5	1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis I	18	16	1
aspartate superpathway	25	22	1