Experiment set15H39 for Pseudomonas stutzeri RCH2

Compare to:

RCH2 grown on a colony of Pseudomonas migulae strain N1B4

200 most important genes:

  gene name fitness t score description  
Psest_0558 -4.5 -0.8 urease, beta subunit compare
Psest_3178 -4.0 -2.8 formyltetrahydrofolate deformylase compare
Psest_3518 -3.6 -0.9 Transcriptional regulators compare
Psest_4406 -3.5 -1.9 hypothetical protein compare
Psest_0411 -3.4 -11.4 biotin synthetase compare
Psest_1999 -3.1 -0.9 pseudouridine synthase compare
Psest_0508 -3.0 -9.9 gamma-glutamyl phosphate reductase compare
Psest_0191 -2.9 -1.0 PAS domain S-box compare
Psest_2333 -2.9 -0.9 Protein of unknown function (DUF3359). compare
Psest_3531 -2.7 -1.2 Peptidase propeptide and YPEB domain. compare
Psest_2308 -2.6 -0.9 Predicted Fe-S protein compare
Psest_3384 -2.6 -8.8 glutamate 5-kinase compare
Psest_4335 -2.5 -1.5 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_3884 -2.4 -0.7 Signal transduction histidine kinase compare
Psest_1012 -2.4 -3.9 Signal transduction histidine kinase compare
Psest_0952 -2.3 -2.2 Uncharacterized conserved protein compare
Psest_4010 -2.3 -1.0 peroxiredoxin, OsmC subfamily compare
Psest_2325 -2.2 -6.0 alpha-L-glutamate ligase-related protein compare
Psest_0999 -2.1 -1.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3351 -2.1 -3.7 peptide chain release factor 3 compare
Psest_0119 -2.1 -2.0 hypothetical protein compare
Psest_0744 -2.0 -0.8 Uncharacterized conserved protein compare
Psest_3177 -2.0 -1.6 hypothetical protein compare
Psest_0212 -2.0 -1.7 exodeoxyribonuclease V, gamma subunit compare
Psest_3377 -2.0 -0.6 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1920 -2.0 -0.5 Uncharacterized protein conserved in bacteria compare
Psest_1159 -2.0 -5.2 Uncharacterized iron-regulated protein compare
Psest_0919 -2.0 -2.1 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_1156 -1.9 -6.1 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Psest_3395 -1.9 -1.1 hypothetical protein compare
Psest_0831 -1.9 -0.7 hypothetical protein compare
Psest_1466 -1.9 -2.9 transcriptional regulator, Spx/MgsR family compare
Psest_4191 -1.9 -3.0 Transcriptional regulator compare
Psest_0846 -1.8 -3.4 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_0498 -1.8 -0.9 ribosome small subunit-dependent GTPase A compare
Psest_3512 -1.8 -5.6 fumarylacetoacetate (FAA) hydrolase (EC 3.7.1.2) (from data) compare
Psest_1157 -1.8 -3.4 Predicted periplasmic lipoprotein compare
Psest_0193 -1.8 -1.1 conserved hypothetical protein compare
Psest_0678 -1.8 -3.1 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_1103 -1.8 -2.3 GTP-binding protein YchF compare
Psest_1772 -1.8 -3.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0988 -1.7 -1.8 Protein of unknown function (DUF2845). compare
Psest_4134 -1.7 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_3129 -1.7 -0.9 tyrosine recombinase XerD compare
Psest_1279 -1.7 -2.1 hypothetical protein compare
Psest_2324 -1.7 -9.8 hypothetical protein compare
Psest_1884 -1.7 -1.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0310 -1.7 -1.1 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_3080 -1.6 -1.6 AraC-type DNA-binding domain-containing proteins compare
Psest_4298 -1.6 -0.8 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_1282 -1.6 -1.7 Amidases related to nicotinamidase compare
Psest_3792 -1.6 -2.5 Putative translation initiation inhibitor, yjgF family compare
Psest_2718 -1.6 -0.8 hypothetical protein compare
Psest_1724 -1.6 -2.6 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3042 -1.6 -0.8 Nitrate reductase cytochrome c-type subunit compare
Psest_0129 -1.6 -8.3 Protein of unknown function (DUF2931). compare
Psest_3474 -1.6 -2.8 Short-chain dehydrogenases of various substrate specificities compare
Psest_1078 -1.6 -2.9 acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) (from data) compare
Psest_3014 -1.6 -1.4 cob(I)alamin adenosyltransferase compare
Psest_0413 -1.6 -3.2 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_3399 -1.6 -0.7 Uncharacterized protein conserved in bacteria compare
Psest_2981 -1.6 -1.6 sodium pump decarboxylases, gamma subunit compare
Psest_3047 -1.6 -0.9 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_1008 -1.5 -0.7 hypothetical protein compare
Psest_0152 -1.5 -3.1 Imidazoleglycerol-phosphate dehydratase compare
Psest_2864 -1.5 -2.7 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0872 -1.5 -0.8 Helix-turn-helix. compare
Psest_3151 -1.5 -2.1 hypothetical protein compare
Psest_3533 -1.5 -3.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2018 -1.5 -1.6 Uncharacterized conserved protein compare
Psest_0845 -1.5 -0.6 hypothetical protein compare
Psest_0281 -1.5 -4.6 Dynamin family. compare
Psest_3298 -1.4 -5.6 histidinol dehydrogenase compare
Psest_2850 -1.4 -0.8 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_0412 -1.4 -6.0 8-amino-7-oxononanoate synthase compare
Psest_3449 -1.4 -1.4 DJ-1 family protein compare
Psest_1520 -1.4 -2.1 hypothetical protein compare
Psest_0592 -1.4 -1.7 hypothetical protein compare
Psest_2532 -1.4 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_1199 -1.4 -2.3 OHCU decarboxylase compare
Psest_2120 -1.4 -1.5 Transcriptional regulator compare
Psest_0718 -1.4 -2.7 nicotinate-nucleotide pyrophosphorylase compare
Psest_3904 -1.4 -1.1 hypothetical protein compare
Psest_0722 -1.4 -3.8 Predicted ATPase compare
Psest_0503 -1.4 -0.7 Acyl dehydratase compare
Psest_1162 -1.4 -1.4 Spermidine synthase compare
Psest_0547 -1.3 -2.2 Urease accessory protein UreF compare
Psest_3322 -1.3 -8.8 TIGR02099 family protein compare
Psest_1496 -1.3 -0.5 Holliday junction DNA helicase, RuvA subunit compare
Psest_1877 -1.3 -2.0 AraC-type DNA-binding domain-containing proteins compare
Psest_1686 -1.3 -3.3 fatty acid/phospholipid synthesis protein PlsX compare
Psest_0115 -1.3 -0.7 Predicted integral membrane protein compare
Psest_2648 -1.3 -1.5 hypothetical protein compare
Psest_2150 -1.3 -1.7 DNA polymerase LigD, polymerase domain compare
Psest_4243 -1.3 -1.4 type VI secretion lipoprotein, VC_A0113 family compare
Psest_3299 -1.3 -6.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_4371 -1.3 -1.7 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_1022 -1.3 -5.6 Thiol:disulfide interchange protein compare
Psest_2126 -1.3 -3.3 Transcriptional regulators compare
Psest_4049 -1.2 -1.1 hypothetical protein compare
Psest_4142 -1.2 -0.9 hypothetical protein compare
Psest_1486 -1.2 -1.8 hypothetical protein compare
Psest_4103 -1.2 -0.8 AraC-type DNA-binding domain-containing proteins compare
Psest_3979 -1.2 -1.4 Fructose-2,6-bisphosphatase compare
Psest_1080 -1.2 -5.0 Acetyl/propionyl-CoA carboxylase, alpha subunit compare
Psest_3550 -1.2 -1.3 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_2101 -1.2 -0.8 hypothetical protein compare
Psest_4252 -1.2 -3.1 Uncharacterized protein conserved in bacteria compare
Psest_2945 -1.2 -0.8 septum site-determining protein MinC compare
Psest_2047 -1.2 -2.0 Signal transduction histidine kinase compare
Psest_0139 -1.2 -3.9 ABC-type histidine transport system, ATPase component compare
Psest_4350 -1.2 -3.2 Transcriptional regulators of sugar metabolism compare
Psest_4393 -1.2 -3.7 Capsule polysaccharide export protein compare
Psest_1656 -1.2 -0.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_2023 -1.2 -1.9 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_1463 -1.2 -0.6 SufE protein probably involved in Fe-S center assembly compare
Psest_3864 -1.2 -6.1 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3839 -1.2 -2.8 D-lactate/glycolate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6; EC 1.1.99.14) (from data) compare
Psest_3944 -1.2 -1.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3039 -1.2 -0.8 periplasmic nitrate reductase, NapE protein compare
Psest_2743 -1.2 -1.9 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Psest_2243 -1.1 -0.6 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_1158 -1.1 -3.7 Predicted thiol oxidoreductase compare
Psest_2591 -1.1 -1.7 3-isopropylmalate dehydratase, large subunit compare
Psest_1709 -1.1 -2.5 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_3853 -1.1 -1.3 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_4078 -1.1 -1.4 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_3527 -1.1 -3.0 Pseudouridylate synthases, 23S RNA-specific compare
Psest_3117 -1.1 -2.2 electron transport complex, RnfABCDGE type, E subunit compare
Psest_0869 -1.1 -1.6 Acetyltransferase (isoleucine patch superfamily) compare
Psest_1166 -1.1 -1.0 transcriptional regulator, ArgP family compare
Psest_4126 -1.1 -1.3 Predicted peroxiredoxins compare
Psest_0153 -1.1 -5.1 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3303 -1.1 -2.8 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2712 -1.1 -2.3 Surface lipoprotein compare
Psest_2293 -1.1 -0.7 hypothetical protein compare
Psest_3478 -1.1 -1.0 Cytochrome B561 compare
Psest_2278 -1.0 -1.8 coenzyme PQQ biosynthesis protein PqqD compare
Psest_1562 -1.0 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_0201 -1.0 -3.9 PAS domain S-box compare
Psest_1293 -1.0 -0.6 VanZ like family. compare
Psest_1292 -1.0 -4.4 monothiol glutaredoxin, Grx4 family compare
Psest_3323 -1.0 -3.3 ribonuclease, Rne/Rng family compare
Psest_1248 -1.0 -3.8 RNA methyltransferase, TrmH family, group 1 compare
Psest_3678 -1.0 -2.8 acyl-phosphate glycerol 3-phosphate acyltransferase compare
Psest_1013 -1.0 -1.5 phosphoribosylamine--glycine ligase compare
Psest_0587 -1.0 -1.9 Domain of Unknown Function (DUF326). compare
Psest_2714 -1.0 -1.0 7-cyano-7-deazaguanine reductase compare
Psest_3973 -1.0 -0.7 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_3212 -1.0 -2.1 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_0292 -1.0 -2.4 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_1699 -1.0 -2.0 Selenocysteine lyase compare
Psest_0186 -1.0 -2.6 Protein-disulfide isomerase compare
Psest_0306 -1.0 -4.1 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_0038 -1.0 -3.4 hypothetical protein compare
Psest_0987 -1.0 -1.0 Predicted periplasmic or secreted lipoprotein compare
Psest_3511 -1.0 -4.0 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
Psest_2855 -1.0 -0.8 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_3865 -1.0 -2.1 Predicted integral membrane protein (DUF2269). compare
Psest_2719 -1.0 -1.4 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_4003 -1.0 -2.8 TIGR00153 family protein compare
Psest_3659 -1.0 -1.7 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2810 -1.0 -2.2 5'/3'-nucleotidase SurE compare
Psest_1249 -1.0 -2.9 serine O-acetyltransferase compare
Psest_0014 -1.0 -2.2 PilZ domain. compare
Psest_0644 -1.0 -2.0 siderophore ferric iron reductase, AHA_1954 family compare
Psest_2457 -1.0 -1.7 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
Psest_4219 -1.0 -1.2 DNA polymerase I compare
Psest_2384 -1.0 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_2757 -1.0 -0.6 hypothetical protein compare
Psest_2304 -1.0 -0.4 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_2579 -0.9 -3.5 amidophosphoribosyltransferase compare
Psest_2693 -0.9 -1.9 muconolactone delta-isomerase compare
Psest_3357 -0.9 -1.8 Predicted pyrophosphatase compare
Psest_1451 -0.9 -1.5 Uncharacterized ABC-type transport system, permease components compare
Psest_3480 -0.9 -1.3 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_1762 -0.9 -1.2 cytochrome c-type biogenesis protein CcmI compare
Psest_1804 -0.9 -0.6 Superfamily II DNA and RNA helicases compare
Psest_3819 -0.9 -1.5 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_0660 -0.9 -1.5 Methyl-accepting chemotaxis protein compare
Psest_2628 -0.9 -1.4 Flp pilus assembly protein, protease CpaA compare
Psest_3816 -0.9 -0.6 DNA-directed RNA polymerase, omega subunit compare
Psest_2668 -0.9 -2.0 Lactoylglutathione lyase and related lyases compare
Psest_0969 -0.9 -0.9 transcription elongation factor GreA compare
Psest_0915 -0.9 -2.9 hypothetical protein compare
Psest_3090 -0.9 -4.2 DNA repair protein RecO compare
Psest_1665 -0.9 -2.1 hypothetical protein compare
Psest_1774 -0.9 -1.0 Glutathione peroxidase compare
Psest_1600 -0.9 -0.9 hypothetical protein compare
Psest_2974 -0.9 -3.4 Predicted glycosyltransferase compare
Psest_0155 -0.9 -2.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_1909 -0.9 -1.6 Phosphohistidine phosphatase SixA compare
Psest_0064 -0.9 -1.7 Transcriptional regulator compare
Psest_1505 -0.9 -1.0 Organic radical activating enzymes compare
Psest_0662 -0.9 -1.0 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0848 -0.9 -2.1 hypothetical protein compare
Psest_1663 -0.9 -1.4 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_1826 -0.9 -1.7 hypothetical protein compare
Psest_1083 -0.9 -3.4 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) compare
Psest_3772 -0.9 -2.4 ammonium transporter compare


Specific Phenotypes

For 5 genes in this experiment