Experiment set15H38 for Pseudomonas stutzeri RCH2

Compare to:

RCH2 grown on a colony of N2A2

200 most important genes:

  gene name fitness t score description  
Psest_0164 -4.1 -0.9 Glutaredoxin, GrxC family compare
Psest_3178 -4.0 -3.3 formyltetrahydrofolate deformylase compare
Psest_0411 -3.6 -10.6 biotin synthetase compare
Psest_2304 -3.5 -0.7 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_2538 -3.1 -1.3 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_2067 -2.9 -1.2 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0508 -2.8 -7.1 gamma-glutamyl phosphate reductase compare
Psest_2872 -2.6 -1.3 protein RecA compare
Psest_0718 -2.4 -3.2 nicotinate-nucleotide pyrophosphorylase compare
Psest_4191 -2.4 -2.8 Transcriptional regulator compare
Psest_4310 -2.4 -1.5 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_3908 -2.4 -1.2 Cytochrome c553 compare
Psest_1772 -2.3 -4.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0959 -2.2 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_1167 -2.2 -0.9 hypothetical protein compare
Psest_0311 -2.2 -4.9 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_2714 -2.2 -1.6 7-cyano-7-deazaguanine reductase compare
Psest_1087 -2.2 -1.1 uncharacterized peroxidase-related enzyme compare
Psest_4142 -2.2 -1.3 hypothetical protein compare
Psest_3384 -2.1 -7.3 glutamate 5-kinase compare
Psest_3518 -2.1 -1.1 Transcriptional regulators compare
Psest_0845 -2.1 -0.7 hypothetical protein compare
Psest_2945 -2.0 -0.9 septum site-determining protein MinC compare
Psest_0537 -2.0 -1.8 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_2809 -2.0 -3.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_3301 -2.0 -1.2 Predicted transcriptional regulator, BolA superfamily compare
Psest_3351 -2.0 -2.3 peptide chain release factor 3 compare
Psest_4274 -2.0 -1.5 hypothetical protein compare
Psest_0161 -2.0 -2.0 Membrane-bound metallopeptidase compare
Psest_2907 -2.0 -1.0 Protein of unknown function (DUF3618). compare
Psest_1863 -1.9 -2.2 hypothetical protein compare
Psest_2091 -1.9 -3.2 Molecular chaperone (small heat shock protein) compare
Psest_3042 -1.9 -1.0 Nitrate reductase cytochrome c-type subunit compare
Psest_1012 -1.9 -3.2 Signal transduction histidine kinase compare
Psest_2023 -1.9 -2.9 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_0155 -1.9 -4.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_4010 -1.9 -0.9 peroxiredoxin, OsmC subfamily compare
Psest_0309 -1.8 -0.6 RND family efflux transporter, MFP subunit compare
Psest_0152 -1.8 -3.8 Imidazoleglycerol-phosphate dehydratase compare
Psest_2324 -1.8 -9.5 hypothetical protein compare
Psest_0867 -1.8 -1.1 hypothetical protein compare
Psest_0129 -1.7 -9.4 Protein of unknown function (DUF2931). compare
Psest_2122 -1.7 -0.9 Parvulin-like peptidyl-prolyl isomerase compare
Psest_3904 -1.7 -1.2 hypothetical protein compare
Psest_4335 -1.7 -1.4 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_1349 -1.7 -2.2 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_3367 -1.7 -0.9 translation initation factor SUI1, putative, prokaryotic compare
Psest_3693 -1.7 -1.6 Glycosyltransferases involved in cell wall biogenesis compare
Psest_0725 -1.7 -1.6 Negative regulator of beta-lactamase expression compare
Psest_3322 -1.7 -10.5 TIGR02099 family protein compare
Psest_1920 -1.6 -0.5 Uncharacterized protein conserved in bacteria compare
Psest_2901 -1.6 -1.2 hypothetical protein compare
Psest_1505 -1.6 -1.3 Organic radical activating enzymes compare
Psest_0660 -1.6 -2.2 Methyl-accepting chemotaxis protein compare
Psest_1080 -1.6 -5.7 Acetyl/propionyl-CoA carboxylase, alpha subunit compare
Psest_2025 -1.6 -0.8 cold shock domain protein CspD compare
Psest_2096 -1.6 -2.2 Domain of unknown function (DUF1883). compare
Psest_0412 -1.6 -5.1 8-amino-7-oxononanoate synthase compare
Psest_3031 -1.5 -0.5 hypothetical protein compare
Psest_3944 -1.5 -2.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3145 -1.5 -1.0 hypothetical protein compare
Psest_3177 -1.5 -1.3 hypothetical protein compare
Psest_3864 -1.5 -8.4 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_4183 -1.5 -1.7 PilZ domain. compare
Psest_1083 -1.5 -5.5 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) compare
Psest_0277 -1.4 -1.0 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_0413 -1.4 -3.2 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_1994 -1.4 -2.7 Amidases related to nicotinamidase compare
Psest_3298 -1.4 -6.2 histidinol dehydrogenase compare
Psest_1159 -1.4 -4.5 Uncharacterized iron-regulated protein compare
Psest_1197 -1.4 -3.8 Ureidoglycolate hydrolase compare
Psest_2325 -1.4 -5.6 alpha-L-glutamate ligase-related protein compare
Psest_1480 -1.4 -1.5 arsenate reductase (glutaredoxin) compare
Psest_0415 -1.4 -2.3 dethiobiotin synthase compare
Psest_3112 -1.4 -2.5 electron transport complex, RnfABCDGE type, A subunit compare
Psest_0191 -1.4 -0.8 PAS domain S-box compare
Psest_2243 -1.4 -0.7 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_2651 -1.4 -2.5 DNA topoisomerase I, bacterial compare
Psest_3756 -1.4 -2.2 hypothetical protein compare
Psest_1242 -1.4 -1.6 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_0533 -1.4 -3.9 Sel1 repeat. compare
Psest_3072 -1.3 -3.2 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit compare
Psest_1860 -1.3 -1.9 Uncharacterized conserved protein compare
Psest_1084 -1.3 -6.0 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) compare
Psest_0687 -1.3 -5.1 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_0310 -1.3 -1.3 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_0306 -1.3 -6.8 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_1166 -1.3 -1.6 transcriptional regulator, ArgP family compare
Psest_3482 -1.3 -3.0 Parvulin-like peptidyl-prolyl isomerase compare
Psest_3151 -1.3 -1.8 hypothetical protein compare
Psest_4393 -1.3 -3.9 Capsule polysaccharide export protein compare
Psest_0153 -1.3 -5.5 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0999 -1.3 -1.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1162 -1.3 -1.4 Spermidine synthase compare
Psest_3502 -1.3 -1.9 flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family compare
Psest_1663 -1.2 -2.2 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_3512 -1.2 -2.8 fumarylacetoacetate (FAA) hydrolase (EC 3.7.1.2) (from data) compare
Psest_1679 -1.2 -1.0 ribonuclease, Rne/Rng family compare
Psest_0257 -1.2 -1.4 Predicted Zn-dependent peptidases compare
Psest_2126 -1.2 -2.5 Transcriptional regulators compare
Psest_0193 -1.2 -0.9 conserved hypothetical protein compare
Psest_1315 -1.2 -1.2 hypothetical protein compare
Psest_0260 -1.2 -0.9 Cell division protein compare
Psest_4303 -1.2 -1.2 HEAT repeat. compare
Psest_3998 -1.2 -3.8 glutamate--cysteine ligase compare
Psest_3927 -1.2 -2.8 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_2629 -1.2 -2.5 Flp pilus assembly protein, pilin Flp compare
Psest_1077 -1.2 -3.4 acetyl-CoA:acetoacetate CoA transferase, B subunit (EC 2.8.3.8) (from data) compare
Psest_3047 -1.2 -0.7 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_0393 -1.2 -4.5 Methylase of chemotaxis methyl-accepting proteins compare
Psest_4301 -1.2 -3.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_4256 -1.2 -1.6 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_3191 -1.2 -1.8 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Psest_4243 -1.1 -1.0 type VI secretion lipoprotein, VC_A0113 family compare
Psest_1940 -1.1 -2.1 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain compare
Psest_1371 -1.1 -2.8 hypothetical protein compare
Psest_3129 -1.1 -0.8 tyrosine recombinase XerD compare
Psest_4363 -1.1 -4.8 ATPases involved in chromosome partitioning compare
Psest_0872 -1.1 -0.7 Helix-turn-helix. compare
Psest_2561 -1.1 -0.6 hypothetical protein compare
Psest_0498 -1.1 -0.8 ribosome small subunit-dependent GTPase A compare
Psest_0549 -1.1 -3.3 Predicted acetyltransferase compare
Psest_3860 -1.1 -1.7 Predicted permeases compare
Psest_0842 -1.1 -1.0 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_2581 -1.1 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_0175 -1.1 -4.3 Xaa-Pro aminopeptidase compare
Psest_0188 -1.1 -3.3 diguanylate cyclase (GGDEF) domain compare
Psest_0313 -1.1 -3.2 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0414 -1.1 -2.6 biotin biosynthesis protein BioC compare
Psest_3954 -1.1 -1.2 Small protein A (tmRNA-binding) compare
Psest_3511 -1.1 -4.6 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
Psest_0722 -1.1 -2.8 Predicted ATPase compare
Psest_1496 -1.1 -0.5 Holliday junction DNA helicase, RuvA subunit compare
Psest_3070 -1.1 -1.3 3-oxoadipyl-CoA thiolase compare
Psest_2766 -1.1 -0.5 hypothetical protein compare
Psest_4390 -1.1 -2.7 hypothetical protein compare
Psest_2434 -1.1 -1.6 Protein of unknown function (DUF2892). compare
Psest_2358 -1.1 -1.1 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1292 -1.1 -4.5 monothiol glutaredoxin, Grx4 family compare
Psest_3762 -1.1 -2.3 iron donor protein CyaY compare
Psest_3106 -1.1 -3.5 Predicted outer membrane protein compare
Psest_3562 -1.0 -1.2 ABC-type antimicrobial peptide transport system, ATPase component compare
Psest_2591 -1.0 -1.6 3-isopropylmalate dehydratase, large subunit compare
Psest_3222 -1.0 -1.8 Putative threonine efflux protein compare
Psest_3884 -1.0 -0.5 Signal transduction histidine kinase compare
Psest_3111 -1.0 -3.8 hypothetical protein compare
Psest_3005 -1.0 -1.5 Fructose-2,6-bisphosphatase compare
Psest_2046 -1.0 -2.7 hypothetical protein compare
Psest_4061 -1.0 -1.8 sulfate ABC transporter, permease protein CysT compare
Psest_1554 -1.0 -3.3 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_2370 -1.0 -1.6 Protein of unknown function (DUF1652). compare
Psest_1157 -1.0 -1.8 Predicted periplasmic lipoprotein compare
Psest_1179 -1.0 -0.9 2-hydroxy-3-oxopropionate reductase compare
Psest_4064 -1.0 -1.6 Lactate dehydrogenase and related dehydrogenases compare
Psest_1183 -1.0 -1.7 hydroxyisourate hydrolase compare
Psest_2896 -1.0 -1.8 hypothetical protein compare
Psest_3014 -1.0 -0.8 cob(I)alamin adenosyltransferase compare
Psest_0359 -1.0 -1.6 Transcriptional regulators compare
Psest_0778 -1.0 -1.9 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin compare
Psest_0281 -1.0 -3.7 Dynamin family. compare
Psest_1562 -1.0 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_4003 -1.0 -2.2 TIGR00153 family protein compare
Psest_1854 -1.0 -3.2 Domain of Unknown Function (DUF748). compare
Psest_1657 -1.0 -0.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_3158 -1.0 -3.2 hypothetical protein compare
Psest_2758 -1.0 -1.3 Predicted transcriptional regulators compare
Psest_3230 -1.0 -2.6 Uncharacterized conserved protein compare
Psest_1417 -1.0 -0.8 hypothetical protein compare
Psest_3988 -1.0 -2.6 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_0568 -1.0 -1.5 pseudouridine synthase compare
Psest_3476 -0.9 -1.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_4088 -0.9 -2.2 Transcriptional regulators compare
Psest_0644 -0.9 -1.7 siderophore ferric iron reductase, AHA_1954 family compare
Psest_4314 -0.9 -2.1 ABC-type metal ion transport system, ATPase component compare
Psest_1022 -0.9 -3.9 Thiol:disulfide interchange protein compare
Psest_2502 -0.9 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_0558 -0.9 -0.5 urease, beta subunit compare
Psest_4391 -0.9 -5.5 ATPases involved in chromosome partitioning compare
Psest_2475 -0.9 -2.2 Acyl-CoA dehydrogenases compare
Psest_1656 -0.9 -0.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_0094 -0.9 -1.0 Uncharacterized enzyme of phosphonate metabolism compare
Psest_2532 -0.9 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_3247 -0.9 -0.9 Uncharacterized membrane protein compare
Psest_1582 -0.9 -1.4 Protein of unknown function (DUF3087). compare
Psest_2293 -0.9 -0.6 hypothetical protein compare
Psest_3082 -0.9 -2.8 Predicted secreted protein compare
Psest_4128 -0.9 -0.8 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_2850 -0.9 -0.6 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_3790 -0.9 -4.5 Cytochrome c5 compare
Psest_3890 -0.9 -0.7 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_0292 -0.9 -1.9 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_4216 -0.9 -1.8 hypothetical protein compare
Psest_4396 -0.9 -3.9 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_4049 -0.9 -0.9 hypothetical protein compare
Psest_1354 -0.9 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_3921 -0.9 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_0856 -0.9 -2.7 Predicted oxidoreductase compare
Psest_3507 -0.9 -1.8 FOG: EAL domain compare
Psest_0119 -0.9 -1.1 hypothetical protein compare
Psest_1161 -0.9 -1.4 E3 Ubiquitin ligase. compare


Specific Phenotypes

For 4 genes in this experiment