Experiment set15H37 for Pseudomonas stutzeri RCH2

Compare to:

RCH2 grown on a colony of N2A2

200 most important genes:

  gene name fitness t score description  
Psest_3178 -4.8 -2.5 formyltetrahydrofolate deformylase compare
Psest_0411 -3.9 -12.1 biotin synthetase compare
Psest_3399 -3.4 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_0508 -3.3 -8.8 gamma-glutamyl phosphate reductase compare
Psest_3546 -3.3 -0.9 Phosphatidylglycerophosphatase A and related proteins compare
Psest_3890 -2.8 -1.7 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_3002 -2.8 -2.3 Putative translation initiation inhibitor, yjgF family compare
Psest_2265 -2.8 -3.5 Outer membrane protein compare
Psest_0998 -2.7 -3.1 poly(A) polymerase compare
Psest_1103 -2.7 -2.6 GTP-binding protein YchF compare
Psest_1463 -2.7 -0.9 SufE protein probably involved in Fe-S center assembly compare
Psest_3384 -2.7 -7.2 glutamate 5-kinase compare
Psest_1772 -2.6 -3.8 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3301 -2.6 -2.1 Predicted transcriptional regulator, BolA superfamily compare
Psest_4191 -2.3 -3.4 Transcriptional regulator compare
Psest_1505 -2.3 -1.8 Organic radical activating enzymes compare
Psest_3884 -2.3 -0.7 Signal transduction histidine kinase compare
Psest_3177 -2.3 -1.7 hypothetical protein compare
Psest_4078 -2.3 -2.0 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_0831 -2.3 -0.8 hypothetical protein compare
Psest_1078 -2.2 -3.8 acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) (from data) compare
Psest_0678 -2.2 -3.2 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_2238 -2.2 -2.8 hypothetical protein compare
Psest_4142 -2.1 -1.2 hypothetical protein compare
Psest_3351 -2.1 -3.5 peptide chain release factor 3 compare
Psest_0152 -2.1 -4.2 Imidazoleglycerol-phosphate dehydratase compare
Psest_0309 -2.1 -0.6 RND family efflux transporter, MFP subunit compare
Psest_3519 -2.1 -2.4 Uncharacterized conserved protein compare
Psest_2946 -2.1 -2.4 septum site-determining protein MinD compare
Psest_2325 -2.1 -8.4 alpha-L-glutamate ligase-related protein compare
Psest_1870 -2.1 -1.0 Transcriptional regulators compare
Psest_1156 -2.0 -5.3 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Psest_1354 -2.0 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_0113 -2.0 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_3512 -2.0 -5.5 fumarylacetoacetate (FAA) hydrolase (EC 3.7.1.2) (from data) compare
Psest_2324 -1.9 -12.6 hypothetical protein compare
Psest_1077 -1.9 -7.6 acetyl-CoA:acetoacetate CoA transferase, B subunit (EC 2.8.3.8) (from data) compare
Psest_3478 -1.8 -1.6 Cytochrome B561 compare
Psest_3226 -1.8 -0.8 Predicted membrane protein compare
Psest_1643 -1.8 -0.9 hypothetical protein compare
Psest_0259 -1.8 -0.8 cell division ATP-binding protein FtsE compare
Psest_3816 -1.8 -0.9 DNA-directed RNA polymerase, omega subunit compare
Psest_0120 -1.7 -4.2 hypothetical protein compare
Psest_1417 -1.7 -1.1 hypothetical protein compare
Psest_0414 -1.7 -3.6 biotin biosynthesis protein BioC compare
Psest_1185 -1.7 -2.2 heavy metal response regulator compare
Psest_4003 -1.7 -5.0 TIGR00153 family protein compare
Psest_3850 -1.7 -0.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3322 -1.7 -11.1 TIGR02099 family protein compare
Psest_0129 -1.7 -7.4 Protein of unknown function (DUF2931). compare
Psest_1315 -1.6 -1.4 hypothetical protein compare
Psest_2786 -1.6 -0.6 Domain of unknown function (DUF3597). compare
Psest_1518 -1.6 -1.9 tRNA_Ser_CGA compare
Psest_2277 -1.6 -3.5 coenzyme PQQ biosynthesis protein A compare
Psest_1238 -1.5 -6.4 Predicted membrane protein/domain compare
Psest_0066 -1.5 -1.4 Protein of unknown function (DUF3060). compare
Psest_2711 -1.5 -1.8 PilZ domain. compare
Psest_3031 -1.5 -0.5 hypothetical protein compare
Psest_0814 -1.5 -1.9 MoxR-like ATPases compare
Psest_1600 -1.5 -1.5 hypothetical protein compare
Psest_4243 -1.5 -1.5 type VI secretion lipoprotein, VC_A0113 family compare
Psest_0718 -1.5 -2.9 nicotinate-nucleotide pyrophosphorylase compare
Psest_4219 -1.4 -1.7 DNA polymerase I compare
Psest_4335 -1.4 -1.3 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_2748 -1.4 -1.2 Transcriptional regulator compare
Psest_0357 -1.4 -1.7 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2590 -1.4 -0.8 3-isopropylmalate dehydratase, small subunit compare
Psest_3222 -1.4 -1.9 Putative threonine efflux protein compare
Psest_1079 -1.4 -3.3 Isopropylmalate/homocitrate/citramalate synthases compare
Psest_3148 -1.4 -0.8 hypothetical protein compare
Psest_1388 -1.4 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_1466 -1.3 -2.0 transcriptional regulator, Spx/MgsR family compare
Psest_0306 -1.3 -6.9 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_1595 -1.3 -0.8 Copper chaperone compare
Psest_2566 -1.3 -0.6 Uncharacterized protein conserved in bacteria compare
Psest_3045 -1.3 -1.5 Cold shock proteins compare
Psest_3231 -1.3 -1.4 hypothetical protein compare
Psest_2532 -1.3 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_2809 -1.3 -2.0 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_3389 -1.3 -1.8 hypothetical protein compare
Psest_0959 -1.3 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_3766 -1.3 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_0510 -1.3 -3.1 iojap-like ribosome-associated protein compare
Psest_3237 -1.3 -1.0 hypothetical protein compare
Psest_0722 -1.3 -4.0 Predicted ATPase compare
Psest_1837 -1.3 -3.9 Endoglucanase compare
Psest_0592 -1.3 -1.7 hypothetical protein compare
Psest_4128 -1.3 -1.1 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_3212 -1.3 -2.4 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_4152 -1.3 -3.1 flagellar basal-body rod protein FlgC compare
Psest_3377 -1.2 -0.5 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_0969 -1.2 -1.1 transcription elongation factor GreA compare
Psest_0067 -1.2 -1.6 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Psest_3954 -1.2 -1.5 Small protein A (tmRNA-binding) compare
Psest_3398 -1.2 -2.5 large conductance mechanosensitive channel protein compare
Psest_3803 -1.2 -0.8 DNA repair protein radc compare
Psest_1111 -1.2 -2.1 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_3554 -1.2 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_1083 -1.2 -4.9 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) compare
Psest_4178 -1.2 -1.9 hypothetical protein compare
Psest_1563 -1.2 -1.5 Protein of unknown function (DUF548). compare
Psest_2520 -1.2 -1.0 Predicted SAM-dependent methyltransferase compare
Psest_1080 -1.2 -3.9 Acetyl/propionyl-CoA carboxylase, alpha subunit compare
Psest_1655 -1.2 -1.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_4134 -1.2 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_3299 -1.2 -6.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3908 -1.2 -0.9 Cytochrome c553 compare
Psest_3944 -1.1 -1.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3864 -1.1 -5.6 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3522 -1.1 -2.3 3-hydroxybutyrate dehydrogenase compare
Psest_0656 -1.1 -3.0 Methyl-accepting chemotaxis protein compare
Psest_1458 -1.1 -3.1 Uncharacterized protein conserved in bacteria compare
Psest_2923 -1.1 -1.1 hypothetical protein compare
Psest_1498 -1.1 -1.3 tol-pal system-associated acyl-CoA thioesterase compare
Psest_3107 -1.1 -2.7 uracil-DNA glycosylase compare
Psest_1709 -1.1 -2.2 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1001 -1.1 -2.1 hypothetical protein compare
Psest_1691 -1.1 -2.2 aminodeoxychorismate lyase compare
Psest_0485 -1.1 -1.9 clan AA aspartic protease, TIGR02281 family compare
Psest_3853 -1.1 -1.7 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_1226 -1.1 -1.8 hypothetical protein compare
Psest_3518 -1.1 -0.7 Transcriptional regulators compare
Psest_0257 -1.1 -1.4 Predicted Zn-dependent peptidases compare
Psest_2579 -1.1 -3.7 amidophosphoribosyltransferase compare
Psest_1084 -1.1 -6.0 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) compare
Psest_1686 -1.1 -2.6 fatty acid/phospholipid synthesis protein PlsX compare
Psest_4363 -1.1 -4.1 ATPases involved in chromosome partitioning compare
Psest_4274 -1.1 -1.0 hypothetical protein compare
Psest_3536 -1.1 -0.9 hypothetical protein compare
Psest_0760 -1.1 -2.5 Polyketide cyclase / dehydrase and lipid transport. compare
Psest_2229 -1.0 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_0954 -1.0 -3.6 Fe-S oxidoreductase compare
Psest_0498 -1.0 -0.7 ribosome small subunit-dependent GTPase A compare
Psest_2872 -1.0 -0.9 protein RecA compare
Psest_1660 -1.0 -0.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_3494 -1.0 -1.9 hypothetical protein compare
Psest_1679 -1.0 -1.1 ribonuclease, Rne/Rng family compare
Psest_2271 -1.0 -1.6 coenzyme PQQ biosynthesis protein PqqD compare
Psest_3958 -1.0 -3.0 Predicted Fe-S-cluster oxidoreductase compare
Psest_2630 -1.0 -2.4 hypothetical protein compare
Psest_1921 -1.0 -2.1 Protein of unknown function (DUF2797). compare
Psest_1824 -1.0 -1.8 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_0015 -1.0 -1.2 Tetratricopeptide repeat. compare
Psest_0842 -1.0 -1.0 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_3298 -1.0 -4.4 histidinol dehydrogenase compare
Psest_0083 -1.0 -1.4 Uncharacterized conserved protein compare
Psest_0609 -1.0 -0.8 hypothetical protein compare
Psest_0417 -1.0 -1.1 Acyl-CoA dehydrogenases compare
Psest_2240 -1.0 -1.1 hypothetical protein compare
Psest_0368 -1.0 -1.5 Transcriptional regulator compare
Psest_3480 -1.0 -1.3 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_2771 -1.0 -1.6 Predicted membrane protein compare
Psest_2940 -1.0 -2.1 Predicted membrane protein compare
Psest_0155 -1.0 -2.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0413 -1.0 -3.1 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_0101 -1.0 -3.5 Short-chain alcohol dehydrogenase of unknown specificity compare
Psest_1516 -1.0 -1.1 Uncharacterized lipoprotein compare
Psest_2527 -1.0 -4.3 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_0442 -1.0 -0.7 ATPases of the AAA+ class compare
Psest_0501 -1.0 -1.6 Predicted nucleoside-diphosphate-sugar epimerases compare
Psest_0153 -1.0 -3.1 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3998 -0.9 -3.8 glutamate--cysteine ligase compare
Psest_1994 -0.9 -2.0 Amidases related to nicotinamidase compare
Psest_1279 -0.9 -1.4 hypothetical protein compare
Psest_2850 -0.9 -0.6 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_1200 -0.9 -3.6 putative urate catabolism protein compare
Psest_0402 -0.9 -1.6 glycosyltransferase, MGT family compare
Psest_3047 -0.9 -0.6 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_1248 -0.9 -3.6 RNA methyltransferase, TrmH family, group 1 compare
Psest_2047 -0.9 -2.1 Signal transduction histidine kinase compare
Psest_3754 -0.9 -2.3 Uncharacterized protein involved in response to NO compare
Psest_0310 -0.9 -1.5 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_0412 -0.9 -3.3 8-amino-7-oxononanoate synthase compare
Psest_2122 -0.9 -0.7 Parvulin-like peptidyl-prolyl isomerase compare
Psest_2046 -0.9 -1.7 hypothetical protein compare
Psest_0193 -0.9 -0.7 conserved hypothetical protein compare
Psest_1913 -0.9 -2.3 Transcriptional regulator compare
Psest_2001 -0.9 -0.5 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_4405 -0.9 -1.0 hypothetical protein compare
Psest_1631 -0.9 -0.9 Uncharacterized conserved small protein compare
Psest_0297 -0.9 -2.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1736 -0.9 -3.0 Cu/Zn superoxide dismutase compare
Psest_1081 -0.9 -2.2 hypothetical protein compare
Psest_4258 -0.9 -2.1 ABC-type uncharacterized transport system, auxiliary component compare
Psest_1881 -0.9 -2.6 Nitroreductase compare
Psest_0673 -0.9 -2.2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_2148 -0.9 -1.9 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1496 -0.9 -0.6 Holliday junction DNA helicase, RuvA subunit compare
Psest_1700 -0.9 -1.8 Transcriptional regulator compare
Psest_2018 -0.9 -1.4 Uncharacterized conserved protein compare
Psest_0078 -0.9 -0.5 hypothetical protein compare
Psest_4126 -0.9 -0.9 Predicted peroxiredoxins compare
Psest_1509 -0.9 -3.5 quinolinate synthetase complex, A subunit compare
Psest_1082 -0.9 -0.7 Enoyl-CoA hydratase/carnithine racemase compare
Psest_2022 -0.9 -1.5 ADP-ribose pyrophosphatase compare
Psest_0114 -0.9 -1.2 RNA polymerase sigma factor, sigma-70 family compare
Psest_2933 -0.9 -4.6 Signal transduction histidine kinase compare
Psest_3456 -0.9 -0.9 RNA polymerase sigma factor, sigma-70 family compare
Psest_2725 -0.9 -1.7 hypothetical protein compare
Psest_1163 -0.8 -2.4 diguanylate cyclase (GGDEF) domain compare


Specific Phenotypes

For 7 genes in this experiment