Experiment set15H37 for Pseudomonas stutzeri RCH2
RCH2 grown on a colony of N2A2
Group:Media:
Culturing: psRCH2_ML7c
By: Peter Rademacher on
Specific Phenotypes
For 7 genes in this experiment
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Valine, leucine and isoleucine degradation
- Butanoate metabolism
- Synthesis and degradation of ketone bodies
- Geraniol degradation
- Tyrosine metabolism
- 1- and 2-Methylnaphthalene degradation
- Benzoate degradation via CoA ligation
- Propanoate metabolism
- Styrene degradation
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| ketolysis | 3 | 3 | 1 |
| L-tyrosine degradation I | 5 | 5 | 1 |
| gallate degradation III (anaerobic) | 11 | 5 | 2 |
| L-leucine degradation I | 6 | 5 | 1 |
| L-glutamate degradation XI (reductive Stickland reaction) | 7 | 4 | 1 |
| acetyl-CoA fermentation to butanoate | 7 | 4 | 1 |
| 4-aminobutanoate degradation V | 7 | 3 | 1 |
| succinate fermentation to butanoate | 7 | 2 | 1 |
| TCA cycle VI (Helicobacter) | 9 | 7 | 1 |
| L-glutamate degradation V (via hydroxyglutarate) | 10 | 7 | 1 |