Experiment set15H36 for Pseudomonas stutzeri RCH2

Compare to:

RCH2 grown on a colony of Serratia

200 most important genes:

  gene name fitness t score description  
Psest_0115 -5.4 -0.7 Predicted integral membrane protein compare
Psest_0508 -5.2 -7.6 gamma-glutamyl phosphate reductase compare
Psest_0744 -5.0 -0.7 Uncharacterized conserved protein compare
Psest_3185 -4.8 -1.3 MoxR-like ATPases compare
Psest_0845 -4.7 -0.6 hypothetical protein compare
Psest_1473 -4.1 -6.4 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3395 -4.0 -0.8 hypothetical protein compare
Psest_1974 -3.8 -2.7 integration host factor, alpha subunit compare
Psest_2079 -3.8 -13.7 Predicted permeases compare
Psest_3890 -3.7 -1.5 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_3384 -3.7 -9.0 glutamate 5-kinase compare
Psest_3399 -3.5 -0.7 Uncharacterized protein conserved in bacteria compare
Psest_0113 -3.5 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_2260 -3.5 -13.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2308 -3.5 -0.7 Predicted Fe-S protein compare
Psest_0062 -3.4 -8.8 tryptophan synthase, alpha subunit compare
Psest_4010 -3.4 -0.6 peroxiredoxin, OsmC subfamily compare
Psest_0218 -3.4 -2.8 Acyl-CoA hydrolase compare
Psest_0993 -3.4 -7.5 Glucose-6-phosphate isomerase compare
Psest_4335 -3.3 -1.1 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_0737 -3.3 -0.8 Cu(I)-responsive transcriptional regulator compare
Psest_0209 -3.3 -0.8 membrane protein AbrB duplication compare
Psest_3129 -3.3 -0.9 tyrosine recombinase XerD compare
Psest_0325 -3.2 -11.4 Putative threonine efflux protein compare
Psest_0969 -3.2 -1.5 transcription elongation factor GreA compare
Psest_1635 -3.1 -16.2 Signal transduction histidine kinase compare
Psest_4142 -3.1 -1.0 hypothetical protein compare
Psest_3100 -3.1 -5.4 RNA polymerase sigma factor RpoE compare
Psest_3178 -3.0 -2.7 formyltetrahydrofolate deformylase compare
Psest_0529 -3.0 -8.1 Putative Mg2+ and Co2+ transporter CorC compare
Psest_3960 -3.0 -1.0 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_0063 -3.0 -8.5 tryptophan synthase, beta subunit compare
Psest_1306 -2.9 -1.3 hypothetical protein compare
Psest_4406 -2.9 -0.9 hypothetical protein compare
Psest_0411 -2.9 -6.9 biotin synthetase compare
Psest_0193 -2.9 -0.9 conserved hypothetical protein compare
Psest_0277 -2.9 -0.7 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_0476 -2.9 -7.2 type I secretion outer membrane protein, TolC family compare
Psest_0538 -2.8 -20.8 Signal transduction histidine kinase compare
Psest_2579 -2.8 -3.8 amidophosphoribosyltransferase compare
Psest_2243 -2.8 -0.5 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_3659 -2.7 -2.4 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3518 -2.7 -0.9 Transcriptional regulators compare
Psest_3301 -2.7 -1.3 Predicted transcriptional regulator, BolA superfamily compare
Psest_3904 -2.7 -1.1 hypothetical protein compare
Psest_1313 -2.7 -1.3 Uncharacterized conserved small protein compare
Psest_3998 -2.7 -6.7 glutamate--cysteine ligase compare
Psest_2756 -2.6 -0.8 hypothetical protein compare
Psest_1863 -2.6 -1.9 hypothetical protein compare
Psest_1242 -2.5 -2.1 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_0999 -2.5 -1.2 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0708 -2.5 -1.1 outer membrane assembly lipoprotein YfiO compare
Psest_2066 -2.5 -1.1 ABC-type uncharacterized transport system, permease component compare
Psest_1080 -2.5 -7.6 Acetyl/propionyl-CoA carboxylase, alpha subunit compare
Psest_0192 -2.4 -4.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2773 -2.4 -7.6 glycerol kinase compare
Psest_0970 -2.4 -1.5 hypothetical protein compare
Psest_1725 -2.4 -8.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2585 -2.4 -0.6 pseudouridylate synthase I compare
Psest_2988 -2.3 -5.9 aspartate kinase, monofunctional class compare
Psest_2232 -2.3 -9.3 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_1149 -2.3 -2.8 Protein affecting phage T7 exclusion by the F plasmid compare
Psest_3226 -2.3 -0.7 Predicted membrane protein compare
Psest_3117 -2.3 -2.3 electron transport complex, RnfABCDGE type, E subunit compare
Psest_1079 -2.3 -4.0 Isopropylmalate/homocitrate/citramalate synthases compare
Psest_4243 -2.2 -1.6 type VI secretion lipoprotein, VC_A0113 family compare
Psest_2591 -2.2 -2.2 3-isopropylmalate dehydratase, large subunit compare
Psest_3351 -2.2 -3.4 peptide chain release factor 3 compare
Psest_2285 -2.2 -1.3 ATP-dependent protease La compare
Psest_0716 -2.2 -1.4 Protein of unknown function (DUF3094). compare
Psest_3146 -2.1 -1.3 hypothetical protein compare
Psest_2651 -2.1 -2.8 DNA topoisomerase I, bacterial compare
Psest_4003 -2.1 -4.1 TIGR00153 family protein compare
Psest_3456 -2.1 -1.2 RNA polymerase sigma factor, sigma-70 family compare
Psest_1994 -2.1 -3.1 Amidases related to nicotinamidase compare
Psest_4177 -2.1 -1.5 flagellar biosynthetic protein FliP compare
Psest_3647 -2.1 -3.3 Indole-3-glycerol phosphate synthase compare
Psest_0061 -2.1 -2.5 hypothetical protein compare
Psest_0959 -2.1 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_3650 -2.1 -8.2 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_1417 -2.1 -1.0 hypothetical protein compare
Psest_1083 -2.0 -6.8 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) compare
Psest_0609 -2.0 -0.9 hypothetical protein compare
Psest_0170 -2.0 -4.5 5,10-methenyltetrahydrofolate synthetase compare
Psest_0309 -2.0 -0.5 RND family efflux transporter, MFP subunit compare
Psest_1879 -2.0 -2.3 Trk-type K+ transport systems, membrane components compare
Psest_1295 -2.0 -5.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3092 -2.0 -1.1 ribonuclease III, bacterial compare
Psest_3803 -1.9 -0.7 DNA repair protein radc compare
Psest_0259 -1.9 -0.7 cell division ATP-binding protein FtsE compare
Psest_4191 -1.9 -2.6 Transcriptional regulator compare
Psest_1656 -1.9 -0.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_0498 -1.9 -0.8 ribosome small subunit-dependent GTPase A compare
Psest_0466 -1.8 -2.0 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0093 -1.8 -2.8 Uncharacterized enzyme of phosphonate metabolism compare
Psest_2712 -1.8 -3.4 Surface lipoprotein compare
Psest_2014 -1.8 -5.0 Isocitrate lyase (EC 4.1.3.1) (from data) compare
Psest_3159 -1.8 -2.5 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1999 -1.8 -0.6 pseudouridine synthase compare
Psest_3042 -1.8 -0.7 Nitrate reductase cytochrome c-type subunit compare
Psest_4303 -1.8 -1.1 HEAT repeat. compare
Psest_4276 -1.8 -1.9 hypothetical protein compare
Psest_1840 -1.8 -11.2 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_2590 -1.8 -0.7 3-isopropylmalate dehydratase, small subunit compare
Psest_4371 -1.8 -1.8 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_2612 -1.8 -2.4 hypothetical protein compare
Psest_3303 -1.8 -3.3 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1837 -1.8 -4.5 Endoglucanase compare
Psest_1078 -1.7 -3.0 acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) (from data) compare
Psest_0401 -1.7 -1.2 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_4343 -1.7 -1.6 Protein of unknown function (DUF3301). compare
Psest_3937 -1.7 -1.2 ATP-dependent protease HslVU, ATPase subunit compare
Psest_4054 -1.7 -1.8 alkanesulfonate monooxygenase, FMNH(2)-dependent compare
Psest_3816 -1.7 -0.7 DNA-directed RNA polymerase, omega subunit compare
Psest_3670 -1.7 -6.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_4163 -1.7 -1.8 hypothetical protein compare
Psest_0165 -1.7 -1.6 protein-export chaperone SecB compare
Psest_1660 -1.7 -0.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_3174 -1.7 -7.2 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_3367 -1.7 -0.7 translation initation factor SUI1, putative, prokaryotic compare
Psest_1029 -1.7 -1.7 Regulator of competence-specific genes compare
Psest_0310 -1.7 -0.9 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_3064 -1.7 -1.5 hypothetical protein compare
Psest_1012 -1.6 -3.0 Signal transduction histidine kinase compare
Psest_1824 -1.6 -2.1 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_1305 -1.6 -2.1 Heat shock protein compare
Psest_1506 -1.6 -4.3 queuosine biosynthesis protein QueC compare
Psest_2711 -1.6 -1.2 PilZ domain. compare
Psest_1920 -1.6 -0.4 Uncharacterized protein conserved in bacteria compare
Psest_2613 -1.6 -0.5 hypothetical protein compare
Psest_4204 -1.6 -3.8 hypothetical protein compare
Psest_1454 -1.6 -4.9 ybaK/ebsC protein compare
Psest_2584 -1.6 -2.6 Phosphoribosylanthranilate isomerase compare
Psest_3050 -1.6 -1.6 tRNA_Gly_CCC compare
Psest_3790 -1.6 -6.0 Cytochrome c5 compare
Psest_1081 -1.6 -3.0 hypothetical protein compare
Psest_3648 -1.6 -3.4 anthranilate phosphoribosyltransferase compare
Psest_3896 -1.6 -1.7 arsenite-activated ATPase ArsA compare
Psest_3458 -1.5 -1.8 hypothetical protein compare
Psest_4363 -1.5 -5.0 ATPases involved in chromosome partitioning compare
Psest_0041 -1.5 -2.8 Uncharacterized protein conserved in bacteria compare
Psest_1084 -1.5 -6.3 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) compare
Psest_2940 -1.5 -1.5 Predicted membrane protein compare
Psest_0693 -1.5 -9.2 His Kinase A (phosphoacceptor) domain./PAS fold./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_3488 -1.5 -2.0 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_3186 -1.5 -4.1 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
Psest_0083 -1.5 -1.4 Uncharacterized conserved protein compare
Psest_2126 -1.4 -2.9 Transcriptional regulators compare
Psest_1918 -1.4 -2.7 Calcineurin-like phosphoesterase. compare
Psest_2864 -1.4 -2.4 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3519 -1.4 -1.3 Uncharacterized conserved protein compare
Psest_2278 -1.4 -2.1 coenzyme PQQ biosynthesis protein PqqD compare
Psest_1013 -1.4 -0.9 phosphoribosylamine--glycine ligase compare
Psest_3850 -1.4 -0.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2775 -1.4 -1.0 Glycerol-3-phosphate dehydrogenase compare
Psest_2680 -1.4 -3.0 transcriptional regulator, BolA protein family compare
Psest_1070 -1.4 -1.9 Predicted membrane protein compare
Psest_1562 -1.3 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_1158 -1.3 -4.2 Predicted thiol oxidoreductase compare
Psest_4403 -1.3 -4.5 hypothetical protein compare
Psest_0243 -1.3 -0.7 hypothetical protein compare
Psest_3693 -1.3 -1.1 Glycosyltransferases involved in cell wall biogenesis compare
Psest_3306 -1.3 -2.0 conserved hypothetical integral membrane protein compare
Psest_2719 -1.3 -0.8 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_3222 -1.3 -1.4 Putative threonine efflux protein compare
Psest_4382 -1.3 -8.1 hypothetical protein compare
Psest_2645 -1.3 -4.8 Transcriptional regulator compare
Psest_3531 -1.3 -0.7 Peptidase propeptide and YPEB domain. compare
Psest_1457 -1.3 -0.8 FOG: Ankyrin repeat compare
Psest_2104 -1.3 -0.8 IscR-regulated protein YhgI compare
Psest_3865 -1.3 -2.5 Predicted integral membrane protein (DUF2269). compare
Psest_3520 -1.3 -2.9 Short chain fatty acids transporter compare
Psest_0958 -1.3 -3.7 Oligoketide cyclase/lipid transport protein compare
Psest_1505 -1.3 -0.8 Organic radical activating enzymes compare
Psest_4393 -1.3 -3.5 Capsule polysaccharide export protein compare
Psest_2165 -1.3 -2.0 Cytochrome B561 compare
Psest_0549 -1.3 -2.5 Predicted acetyltransferase compare
Psest_3950 -1.3 -3.6 D-tyrosyl-tRNA(Tyr) deacylase compare
Psest_0505 -1.3 -2.6 Putative effector of murein hydrolase compare
Psest_3922 -1.3 -2.7 Response regulator of citrate/malate metabolism compare
Psest_0750 -1.3 -3.0 hypothetical protein compare
Psest_4221 -1.3 -1.7 homoserine kinase, Neisseria type compare
Psest_4007 -1.3 -4.0 Uncharacterized protein conserved in bacteria compare
Psest_1315 -1.2 -1.0 hypothetical protein compare
Psest_1518 -1.2 -1.2 tRNA_Ser_CGA compare
Psest_4366 -1.2 -2.1 Multisubunit Na+/H+ antiporter, MnhG subunit compare
Psest_0678 -1.2 -2.5 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_1474 -1.2 -1.2 phosphoribosylaminoimidazole synthetase compare
Psest_1655 -1.2 -1.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_0408 -1.2 -2.1 Protein involved in catabolism of external DNA compare
Psest_2899 -1.2 -0.6 hypothetical protein compare
Psest_3963 -1.2 -3.9 PAS domain S-box compare
Psest_3114 -1.2 -3.5 electron transport complex, RnfABCDGE type, C subunit compare
Psest_3476 -1.2 -0.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1657 -1.2 -0.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_1511 -1.2 -2.9 Predicted redox protein, regulator of disulfide bond formation compare
Psest_3988 -1.2 -2.5 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_0799 -1.2 -2.1 Uncharacterized protein involved in response to NO compare
Psest_1565 -1.2 -2.5 RND family efflux transporter, MFP subunit compare
Psest_3573 -1.2 -1.9 dTDP-4-dehydrorhamnose reductase compare


Specific Phenotypes

For 4 genes in this experiment