Experiment set15H35 for Pseudomonas stutzeri RCH2

Compare to:

RCH2 grown on a colony of Serratia

200 most important genes:

  gene name fitness t score description  
Psest_0115 -5.3 -0.7 Predicted integral membrane protein compare
Psest_1082 -5.2 -1.3 Enoyl-CoA hydratase/carnithine racemase compare
Psest_1366 -5.1 -1.2 hypothetical protein compare
Psest_1888 -4.9 -0.7 Sua5/YciO/YrdC/YwlC family protein compare
Psest_0062 -4.8 -9.3 tryptophan synthase, alpha subunit compare
Psest_4209 -4.4 -2.0 Uncharacterized conserved small protein compare
Psest_3884 -4.3 -0.6 Signal transduction histidine kinase compare
Psest_0993 -4.3 -7.7 Glucose-6-phosphate isomerase compare
Psest_0508 -4.2 -7.0 gamma-glutamyl phosphate reductase compare
Psest_1763 -4.1 -3.0 hypothetical protein compare
Psest_3377 -4.0 -0.6 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_0325 -4.0 -12.2 Putative threonine efflux protein compare
Psest_2304 -4.0 -0.6 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_0063 -3.9 -11.8 tryptophan synthase, beta subunit compare
Psest_1635 -3.8 -17.1 Signal transduction histidine kinase compare
Psest_3937 -3.8 -0.9 ATP-dependent protease HslVU, ATPase subunit compare
Psest_3384 -3.6 -9.2 glutamate 5-kinase compare
Psest_1162 -3.6 -2.0 Spermidine synthase compare
Psest_1008 -3.6 -0.7 hypothetical protein compare
Psest_2260 -3.4 -13.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1920 -3.4 -0.5 Uncharacterized protein conserved in bacteria compare
Psest_0385 -3.3 -1.7 Conserved secreted protein compare
Psest_3546 -3.3 -0.7 Phosphatidylglycerophosphatase A and related proteins compare
Psest_0218 -3.3 -2.6 Acyl-CoA hydrolase compare
Psest_3780 -3.3 -3.3 Transcriptional regulator compare
Psest_0476 -3.2 -7.5 type I secretion outer membrane protein, TolC family compare
Psest_4310 -3.2 -0.8 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_3707 -3.2 -2.6 Transcriptional regulator compare
Psest_0558 -3.2 -0.6 urease, beta subunit compare
Psest_2079 -3.2 -12.9 Predicted permeases compare
Psest_3100 -3.1 -5.5 RNA polymerase sigma factor RpoE compare
Psest_1457 -3.0 -1.4 FOG: Ankyrin repeat compare
Psest_2590 -3.0 -0.8 3-isopropylmalate dehydratase, small subunit compare
Psest_0538 -3.0 -21.2 Signal transduction histidine kinase compare
Psest_4335 -3.0 -1.0 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_0411 -3.0 -8.3 biotin synthetase compare
Psest_3069 -2.9 -1.9 3-oxoadipate enol-lactonase compare
Psest_3565 -2.9 -0.7 hypothetical protein compare
Psest_1725 -2.9 -8.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1999 -2.9 -0.7 pseudouridine synthase compare
Psest_3647 -2.8 -5.3 Indole-3-glycerol phosphate synthase compare
Psest_2308 -2.8 -0.8 Predicted Fe-S protein compare
Psest_2232 -2.8 -9.0 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_2579 -2.8 -1.9 amidophosphoribosyltransferase compare
Psest_1079 -2.7 -3.6 Isopropylmalate/homocitrate/citramalate synthases compare
Psest_3092 -2.7 -0.9 ribonuclease III, bacterial compare
Psest_2110 -2.7 -2.3 hypothetical protein compare
Psest_2940 -2.7 -2.7 Predicted membrane protein compare
Psest_2066 -2.7 -1.0 ABC-type uncharacterized transport system, permease component compare
Psest_1473 -2.7 -4.8 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_4191 -2.6 -2.0 Transcriptional regulator compare
Psest_2711 -2.6 -1.8 PilZ domain. compare
Psest_1083 -2.6 -9.2 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) compare
Psest_0537 -2.6 -1.8 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_4243 -2.6 -1.5 type VI secretion lipoprotein, VC_A0113 family compare
Psest_0697 -2.5 -1.5 ribosomal protein L9 compare
Psest_3047 -2.5 -0.7 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_3531 -2.5 -0.8 Peptidase propeptide and YPEB domain. compare
Psest_3048 -2.5 -1.9 hypothetical protein compare
Psest_3045 -2.4 -1.4 Cold shock proteins compare
Psest_1053 -2.4 -2.3 hypothetical protein compare
Psest_4126 -2.4 -1.4 Predicted peroxiredoxins compare
Psest_2067 -2.4 -0.9 ABC-type oligopeptide transport system, periplasmic component compare
Psest_4003 -2.4 -4.0 TIGR00153 family protein compare
Psest_0969 -2.4 -1.4 transcription elongation factor GreA compare
Psest_0529 -2.4 -6.9 Putative Mg2+ and Co2+ transporter CorC compare
Psest_1819 -2.3 -11.1 Nucleoside-diphosphate-sugar epimerases compare
Psest_1080 -2.3 -5.0 Acetyl/propionyl-CoA carboxylase, alpha subunit compare
Psest_2744 -2.3 -1.0 Uncharacterized conserved protein compare
Psest_0192 -2.3 -5.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1663 -2.3 -1.9 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_2333 -2.2 -0.7 Protein of unknown function (DUF3359). compare
Psest_2018 -2.2 -1.0 Uncharacterized conserved protein compare
Psest_0334 -2.2 -2.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3351 -2.2 -1.5 peptide chain release factor 3 compare
Psest_4274 -2.2 -0.8 hypothetical protein compare
Psest_2651 -2.2 -2.3 DNA topoisomerase I, bacterial compare
Psest_1879 -2.2 -1.5 Trk-type K+ transport systems, membrane components compare
Psest_0692 -2.1 -2.1 rRNA methylase, putative, group 3 compare
Psest_0078 -2.1 -0.7 hypothetical protein compare
Psest_3215 -2.1 -3.2 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Psest_1905 -2.1 -1.7 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_2530 -2.1 -4.2 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_2752 -2.1 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_2945 -2.0 -0.6 septum site-determining protein MinC compare
Psest_1111 -2.0 -1.8 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_3042 -2.0 -0.7 Nitrate reductase cytochrome c-type subunit compare
Psest_2126 -2.0 -3.7 Transcriptional regulators compare
Psest_0227 -2.0 -2.8 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific compare
Psest_1354 -2.0 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_4363 -2.0 -6.6 ATPases involved in chromosome partitioning compare
Psest_3226 -2.0 -0.7 Predicted membrane protein compare
Psest_1167 -2.0 -0.7 hypothetical protein compare
Psest_3117 -2.0 -2.2 electron transport complex, RnfABCDGE type, E subunit compare
Psest_2786 -1.9 -0.5 Domain of unknown function (DUF3597). compare
Psest_4280 -1.9 -3.0 ABC-type spermidine/putrescine transport system, permease component II compare
Psest_3904 -1.9 -1.0 hypothetical protein compare
Psest_1103 -1.9 -1.6 GTP-binding protein YchF compare
Psest_2446 -1.9 -1.4 acetyl-CoA acetyltransferases compare
Psest_0191 -1.9 -0.6 PAS domain S-box compare
Psest_1840 -1.9 -9.0 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_3988 -1.9 -4.6 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_0225 -1.8 -1.6 Predicted permease, DMT superfamily compare
Psest_1357 -1.8 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_2892 -1.8 -2.1 Transcriptional regulator compare
Psest_2437 -1.8 -2.3 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) (from data) compare
Psest_2527 -1.8 -6.0 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_0998 -1.8 -1.9 poly(A) polymerase compare
Psest_0722 -1.8 -3.0 Predicted ATPase compare
Psest_3938 -1.8 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_1084 -1.8 -6.3 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) compare
Psest_3958 -1.8 -3.4 Predicted Fe-S-cluster oxidoreductase compare
Psest_1037 -1.8 -1.7 acetolactate synthase, small subunit compare
Psest_2585 -1.8 -0.6 pseudouridylate synthase I compare
Psest_0987 -1.8 -1.7 Predicted periplasmic or secreted lipoprotein compare
Psest_2864 -1.8 -2.7 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3963 -1.8 -6.3 PAS domain S-box compare
Psest_3014 -1.8 -1.0 cob(I)alamin adenosyltransferase compare
Psest_1242 -1.7 -1.4 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_4106 -1.7 -3.0 formate dehydrogenase, gamma subunit compare
Psest_0952 -1.7 -1.7 Uncharacterized conserved protein compare
Psest_1451 -1.7 -2.2 Uncharacterized ABC-type transport system, permease components compare
Psest_1994 -1.7 -2.6 Amidases related to nicotinamidase compare
Psest_3399 -1.7 -0.7 Uncharacterized protein conserved in bacteria compare
Psest_2976 -1.7 -0.8 hypothetical protein compare
Psest_3112 -1.7 -2.3 electron transport complex, RnfABCDGE type, A subunit compare
Psest_0209 -1.7 -1.1 membrane protein AbrB duplication compare
Psest_1295 -1.7 -4.1 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0309 -1.7 -0.4 RND family efflux transporter, MFP subunit compare
Psest_0568 -1.7 -2.3 pseudouridine synthase compare
Psest_0133 -1.7 -0.6 type VI secretion protein, VC_A0107 family compare
Psest_3114 -1.7 -5.2 electron transport complex, RnfABCDGE type, C subunit compare
Psest_0778 -1.7 -1.8 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin compare
Psest_3236 -1.7 -1.8 hypothetical protein compare
Psest_2584 -1.7 -2.9 Phosphoribosylanthranilate isomerase compare
Psest_0782 -1.6 -2.9 Transcriptional regulator of aromatic amino acids metabolism compare
Psest_2650 -1.6 -2.0 hypothetical protein compare
Psest_3934 -1.6 -2.3 rRNA methylase, putative, group 2 compare
Psest_2266 -1.6 -2.0 hypothetical protein compare
Psest_1463 -1.6 -0.5 SufE protein probably involved in Fe-S center assembly compare
Psest_0950 -1.6 -2.6 hypothetical protein compare
Psest_3342 -1.6 -3.5 Uncharacterized protein conserved in bacteria compare
Psest_0020 -1.6 -3.0 K+ transport systems, NAD-binding component compare
Psest_1783 -1.6 -1.5 Predicted transporter component compare
Psest_0573 -1.6 -3.7 cation diffusion facilitator family transporter compare
Psest_1643 -1.6 -0.7 hypothetical protein compare
Psest_3306 -1.6 -2.7 conserved hypothetical integral membrane protein compare
Psest_0656 -1.6 -2.9 Methyl-accepting chemotaxis protein compare
Psest_2150 -1.6 -1.0 DNA polymerase LigD, polymerase domain compare
Psest_0693 -1.5 -9.8 His Kinase A (phosphoacceptor) domain./PAS fold./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_3447 -1.5 -0.8 Uncharacterized MobA-related protein compare
Psest_3692 -1.5 -2.3 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases compare
Psest_1282 -1.5 -1.2 Amidases related to nicotinamidase compare
Psest_3670 -1.5 -5.0 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_1625 -1.5 -1.8 hypothetical protein compare
Psest_0400 -1.5 -3.0 Geranylgeranyl pyrophosphate synthase compare
Psest_0086 -1.5 -1.5 hypothetical protein compare
Psest_2285 -1.5 -2.2 ATP-dependent protease La compare
Psest_2288 -1.5 -1.7 trigger factor compare
Psest_3697 -1.5 -1.1 Outer membrane lipoprotein carrier protein LolA. compare
Psest_1872 -1.5 -2.2 selT/selW/selH selenoprotein domain compare
Psest_3756 -1.4 -1.4 hypothetical protein compare
Psest_0958 -1.4 -3.4 Oligoketide cyclase/lipid transport protein compare
Psest_2847 -1.4 -1.9 Multisubunit Na+/H+ antiporter, MnhF subunit compare
Psest_1323 -1.4 -2.4 Hydroxypyruvate isomerase compare
Psest_3690 -1.4 -2.5 Acyl carrier protein compare
Psest_3159 -1.4 -1.9 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0536 -1.4 -2.4 thiamine-phosphate pyrophosphorylase compare
Psest_1660 -1.4 -0.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_2570 -1.4 -3.1 Transcriptional regulator compare
Psest_1532 -1.4 -2.1 DNA recombination-dependent growth factor C compare
Psest_0988 -1.4 -1.5 Protein of unknown function (DUF2845). compare
Psest_3860 -1.4 -1.1 Predicted permeases compare
Psest_3115 -1.4 -3.6 electron transport complex, RnfABCDGE type, D subunit compare
Psest_1843 -1.4 -0.9 Uncharacterized Fe-S protein compare
Psest_1183 -1.4 -1.4 hydroxyisourate hydrolase compare
Psest_0378 -1.3 -1.7 Lactate dehydrogenase and related dehydrogenases compare
Psest_0310 -1.3 -0.7 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_2083 -1.3 -3.2 Putative sterol carrier protein compare
Psest_0814 -1.3 -1.2 MoxR-like ATPases compare
Psest_1837 -1.3 -2.8 Endoglucanase compare
Psest_3650 -1.3 -5.4 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_1279 -1.3 -1.4 hypothetical protein compare
Psest_2104 -1.3 -0.6 IscR-regulated protein YhgI compare
Psest_2327 -1.3 -3.5 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein compare
Psest_0771 -1.3 -5.0 Acyl-CoA hydrolase compare
Psest_1540 -1.3 -0.7 biotin-dependent carboxylase uncharacterized domain compare
Psest_1824 -1.3 -1.7 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_0402 -1.3 -1.2 glycosyltransferase, MGT family compare
Psest_2424 -1.3 -1.0 K+ transport systems, NAD-binding component compare
Psest_2480 -1.3 -1.8 Methyl-accepting chemotaxis protein compare
Psest_4067 -1.3 -1.7 Predicted membrane protein compare
Psest_3648 -1.3 -4.0 anthranilate phosphoribosyltransferase compare
Psest_2714 -1.3 -0.9 7-cyano-7-deazaguanine reductase compare
Psest_3212 -1.3 -1.9 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1902 -1.3 -2.2 hypothetical protein compare
Psest_3974 -1.3 -2.8 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_2531 -1.3 -5.7 cytochrome c oxidase accessory protein FixG compare
Psest_2136 -1.3 -4.0 Predicted homoserine dehydrogenase compare
Psest_4128 -1.3 -0.8 Universal stress protein UspA and related nucleotide-binding proteins compare


Specific Phenotypes

For 5 genes in this experiment