Experiment set15H33 for Pseudomonas stutzeri RCH2

Compare to:

RCH2 grown on a colony of ecoli

200 most important genes:

  gene name fitness t score description  
Psest_3512 -6.3 -9.7 fumarylacetoacetate (FAA) hydrolase (EC 3.7.1.2) (from data) compare
Psest_0508 -6.0 -7.2 gamma-glutamyl phosphate reductase compare
Psest_0062 -5.6 -11.3 tryptophan synthase, alpha subunit compare
Psest_3178 -5.1 -2.8 formyltetrahydrofolate deformylase compare
Psest_0063 -5.0 -11.6 tryptophan synthase, beta subunit compare
Psest_1115 -4.7 -2.2 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_3384 -4.6 -9.3 glutamate 5-kinase compare
Psest_2079 -4.3 -18.9 Predicted permeases compare
Psest_1080 -4.2 -11.8 Acetyl/propionyl-CoA carboxylase, alpha subunit compare
Psest_1079 -3.7 -2.5 Isopropylmalate/homocitrate/citramalate synthases compare
Psest_1083 -3.6 -13.1 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) compare
Psest_3129 -3.6 -1.4 tyrosine recombinase XerD compare
Psest_0536 -3.4 -6.7 thiamine-phosphate pyrophosphorylase compare
Psest_1077 -3.4 -10.7 acetyl-CoA:acetoacetate CoA transferase, B subunit (EC 2.8.3.8) (from data) compare
Psest_2579 -3.3 -3.2 amidophosphoribosyltransferase compare
Psest_0959 -3.1 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_2126 -3.1 -5.5 Transcriptional regulators compare
Psest_0267 -3.0 -12.2 Uncharacterized enzyme of thiazole biosynthesis compare
Psest_1078 -2.9 -4.8 acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) (from data) compare
Psest_1012 -2.9 -4.0 Signal transduction histidine kinase compare
Psest_0411 -2.8 -8.3 biotin synthetase compare
Psest_1084 -2.8 -14.6 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) compare
Psest_1082 -2.8 -1.7 Enoyl-CoA hydratase/carnithine racemase compare
Psest_0266 -2.8 -7.4 thiamine biosynthesis protein ThiS compare
Psest_4335 -2.8 -1.8 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_2591 -2.7 -3.3 3-isopropylmalate dehydratase, large subunit compare
Psest_1159 -2.7 -6.2 Uncharacterized iron-regulated protein compare
Psest_0334 -2.6 -3.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1167 -2.6 -1.1 hypothetical protein compare
Psest_0066 -2.6 -2.2 Protein of unknown function (DUF3060). compare
Psest_1417 -2.5 -1.0 hypothetical protein compare
Psest_3884 -2.5 -0.8 Signal transduction histidine kinase compare
Psest_0999 -2.5 -2.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0740 -2.5 -2.4 Transcriptional regulator compare
Psest_2067 -2.4 -1.5 ABC-type oligopeptide transport system, periplasmic component compare
Psest_3351 -2.4 -4.0 peptide chain release factor 3 compare
Psest_0309 -2.4 -0.8 RND family efflux transporter, MFP subunit compare
Psest_2325 -2.2 -7.4 alpha-L-glutamate ligase-related protein compare
Psest_3177 -2.2 -1.9 hypothetical protein compare
Psest_3092 -2.2 -1.6 ribonuclease III, bacterial compare
Psest_3031 -2.2 -0.7 hypothetical protein compare
Psest_1656 -2.2 -1.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_2018 -2.2 -2.3 Uncharacterized conserved protein compare
Psest_3517 -2.1 -12.4 branched-chain ketoacid ferredoxin reductase (EC 1.2.7.7) active on 4-methyl-2-oxopentanoate, (S)-3-methyl-2-oxopentanoate, or 3-methyl-2-oxobutanoate (from data) compare
Psest_1185 -2.1 -2.4 heavy metal response regulator compare
Psest_2757 -2.1 -1.2 hypothetical protein compare
Psest_2324 -2.0 -10.6 hypothetical protein compare
Psest_3518 -2.0 -1.2 Transcriptional regulators compare
Psest_0359 -2.0 -2.1 Transcriptional regulators compare
Psest_3938 -2.0 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_1660 -2.0 -1.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_3146 -2.0 -1.6 hypothetical protein compare
Psest_0164 -2.0 -0.7 Glutaredoxin, GrxC family compare
Psest_0259 -1.9 -1.0 cell division ATP-binding protein FtsE compare
Psest_4310 -1.9 -1.5 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_1994 -1.9 -3.3 Amidases related to nicotinamidase compare
Psest_2090 -1.9 -2.5 Protein of unknown function (DUF2970). compare
Psest_3511 -1.8 -5.3 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
Psest_1824 -1.8 -2.7 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_3516 -1.8 -7.4 Leucine dehydrogenase (EC 1.4.1.9) (from data) compare
Psest_2612 -1.8 -3.3 hypothetical protein compare
Psest_1772 -1.8 -3.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2940 -1.8 -2.7 Predicted membrane protein compare
Psest_3159 -1.8 -4.1 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_3070 -1.8 -2.0 3-oxoadipyl-CoA thiolase compare
Psest_1516 -1.8 -1.5 Uncharacterized lipoprotein compare
Psest_0537 -1.8 -1.4 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_1013 -1.7 -1.2 phosphoribosylamine--glycine ligase compare
Psest_4280 -1.7 -3.5 ABC-type spermidine/putrescine transport system, permease component II compare
Psest_3399 -1.7 -0.8 Uncharacterized protein conserved in bacteria compare
Psest_3565 -1.7 -0.8 hypothetical protein compare
Psest_1655 -1.7 -1.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_3377 -1.7 -0.6 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_4201 -1.7 -1.6 general secretion pathway protein F compare
Psest_3071 -1.7 -4.7 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit compare
Psest_3478 -1.7 -1.1 Cytochrome B561 compare
Psest_2104 -1.7 -1.4 IscR-regulated protein YhgI compare
Psest_2718 -1.6 -0.8 hypothetical protein compare
Psest_2719 -1.6 -1.1 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_0678 -1.6 -2.6 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_2946 -1.6 -3.2 septum site-determining protein MinD compare
Psest_0191 -1.6 -1.0 PAS domain S-box compare
Psest_0209 -1.6 -1.5 membrane protein AbrB duplication compare
Psest_0466 -1.6 -2.7 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_1474 -1.6 -1.1 phosphoribosylaminoimidazole synthetase compare
Psest_1805 -1.6 -1.7 integration host factor, beta subunit compare
Psest_1511 -1.6 -2.1 Predicted redox protein, regulator of disulfide bond formation compare
Psest_1357 -1.6 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_3186 -1.6 -4.8 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
Psest_0417 -1.5 -1.1 Acyl-CoA dehydrogenases compare
Psest_1000 -1.5 -7.5 PAS domain S-box compare
Psest_2333 -1.5 -0.8 Protein of unknown function (DUF3359). compare
Psest_4363 -1.5 -6.2 ATPases involved in chromosome partitioning compare
Psest_3816 -1.5 -1.0 DNA-directed RNA polymerase, omega subunit compare
Psest_1809 -1.5 -7.2 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_1974 -1.5 -2.7 integration host factor, alpha subunit compare
Psest_3998 -1.5 -5.2 glutamate--cysteine ligase compare
Psest_3904 -1.5 -1.2 hypothetical protein compare
Psest_1873 -1.5 -3.3 Predicted permease, DMT superfamily compare
Psest_0846 -1.5 -2.1 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_0644 -1.4 -2.8 siderophore ferric iron reductase, AHA_1954 family compare
Psest_4064 -1.4 -2.9 Lactate dehydrogenase and related dehydrogenases compare
Psest_0413 -1.4 -3.1 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_2775 -1.4 -2.1 Glycerol-3-phosphate dehydrogenase compare
Psest_1199 -1.4 -2.6 OHCU decarboxylase compare
Psest_0093 -1.4 -2.8 Uncharacterized enzyme of phosphonate metabolism compare
Psest_2527 -1.4 -4.5 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_3203 -1.4 -3.2 hypothetical protein compare
Psest_0919 -1.4 -2.0 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_4042 -1.4 -2.0 hypothetical protein compare
Psest_2771 -1.4 -2.6 Predicted membrane protein compare
Psest_1774 -1.4 -1.6 Glutathione peroxidase compare
Psest_1081 -1.4 -2.9 hypothetical protein compare
Psest_4003 -1.3 -3.5 TIGR00153 family protein compare
Psest_4010 -1.3 -0.9 peroxiredoxin, OsmC subfamily compare
Psest_2025 -1.3 -0.8 cold shock domain protein CspD compare
Psest_0057 -1.3 -2.9 Predicted transcriptional regulators compare
Psest_3128 -1.3 -3.2 Protein-disulfide isomerase compare
Psest_1750 -1.3 -1.8 Protein of unknown function (DUF2802). compare
Psest_4307 -1.3 -2.4 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_4142 -1.3 -0.8 hypothetical protein compare
Psest_0998 -1.3 -1.8 poly(A) polymerase compare
Psest_1657 -1.3 -0.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_0845 -1.3 -0.6 hypothetical protein compare
Psest_0170 -1.3 -4.0 5,10-methenyltetrahydrofolate synthetase compare
Psest_1919 -1.3 -2.3 Uncharacterized membrane protein (homolog of Drosophila rhomboid) compare
Psest_0969 -1.3 -1.5 transcription elongation factor GreA compare
Psest_2764 -1.3 -0.8 hypothetical protein compare
Psest_4209 -1.3 -1.3 Uncharacterized conserved small protein compare
Psest_3100 -1.2 -4.7 RNA polymerase sigma factor RpoE compare
Psest_4078 -1.2 -1.1 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_3515 -1.2 -4.6 Na+-dependent transporters of the SNF family compare
Psest_4274 -1.2 -1.4 hypothetical protein compare
Psest_0477 -1.2 -5.5 thiamine biosynthesis protein ThiC compare
Psest_0529 -1.2 -4.3 Putative Mg2+ and Co2+ transporter CorC compare
Psest_0148 -1.2 -2.2 nitrate transport ATP-binding subunits C and D compare
Psest_1200 -1.2 -4.5 putative urate catabolism protein compare
Psest_2229 -1.2 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_1238 -1.2 -3.3 Predicted membrane protein/domain compare
Psest_0515 -1.2 -2.5 rare lipoprotein A compare
Psest_1496 -1.2 -0.5 Holliday junction DNA helicase, RuvA subunit compare
Psest_3042 -1.2 -0.9 Nitrate reductase cytochrome c-type subunit compare
Psest_0292 -1.2 -3.1 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_3647 -1.2 -3.7 Indole-3-glycerol phosphate synthase compare
Psest_3865 -1.2 -2.9 Predicted integral membrane protein (DUF2269). compare
Psest_0722 -1.2 -4.0 Predicted ATPase compare
Psest_0325 -1.2 -7.0 Putative threonine efflux protein compare
Psest_1951 -1.2 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_3536 -1.2 -1.1 hypothetical protein compare
Psest_2122 -1.2 -0.7 Parvulin-like peptidyl-prolyl isomerase compare
Psest_1156 -1.2 -2.8 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Psest_3168 -1.2 -0.9 Molybdopterin converting factor, large subunit compare
Psest_1456 -1.2 -1.4 Protein of unknown function (DUF2892). compare
Psest_1158 -1.1 -4.2 Predicted thiol oxidoreductase compare
Psest_0779 -1.1 -3.4 tyrosine aminotransferase (EC 2.6.1.57) (from data) compare
Psest_2437 -1.1 -2.3 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) (from data) compare
Psest_1588 -1.1 -2.7 Uncharacterized protein involved in copper resistance compare
Psest_2810 -1.1 -2.5 5'/3'-nucleotidase SurE compare
Psest_1466 -1.1 -1.8 transcriptional regulator, Spx/MgsR family compare
Psest_1271 -1.1 -2.5 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family compare
Psest_1103 -1.1 -1.7 GTP-binding protein YchF compare
Psest_0412 -1.1 -3.8 8-amino-7-oxononanoate synthase compare
Psest_2014 -1.1 -4.5 Isocitrate lyase (EC 4.1.3.1) (from data) compare
Psest_2438 -1.1 -4.3 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) (from data) compare
Psest_4163 -1.1 -2.0 hypothetical protein compare
Psest_3507 -1.1 -2.3 FOG: EAL domain compare
Psest_4221 -1.1 -1.7 homoserine kinase, Neisseria type compare
Psest_2436 -1.1 -4.5 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) (from data) compare
Psest_4199 -1.1 -4.1 general secretion pathway protein H compare
Psest_3145 -1.1 -0.9 hypothetical protein compare
Psest_1058 -1.1 -1.7 ribosomal-protein-alanine acetyltransferase compare
Psest_3767 -1.1 -1.9 tyrosine recombinase XerC compare
Psest_1473 -1.1 -2.8 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2369 -1.1 -2.1 Transcriptional regulator compare
Psest_1843 -1.1 -1.3 Uncharacterized Fe-S protein compare
Psest_0277 -1.1 -0.9 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_3306 -1.0 -2.5 conserved hypothetical integral membrane protein compare
Psest_1700 -1.0 -2.9 Transcriptional regulator compare
Psest_1292 -1.0 -3.9 monothiol glutaredoxin, Grx4 family compare
Psest_2428 -1.0 -3.7 hypothetical protein compare
Psest_2590 -1.0 -0.7 3-isopropylmalate dehydratase, small subunit compare
Psest_1804 -1.0 -1.1 Superfamily II DNA and RNA helicases compare
Psest_3768 -1.0 -1.8 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
Psest_0869 -1.0 -1.2 Acetyltransferase (isoleucine patch superfamily) compare
Psest_1326 -1.0 -1.9 Uncharacterized conserved protein compare
Psest_0353 -1.0 -2.9 Methyl-accepting chemotaxis protein compare
Psest_2693 -1.0 -3.0 muconolactone delta-isomerase compare
Psest_3522 -1.0 -1.9 3-hydroxybutyrate dehydrogenase compare
Psest_3819 -1.0 -2.1 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_3304 -1.0 -2.5 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_0498 -1.0 -0.7 ribosome small subunit-dependent GTPase A compare
Psest_4191 -1.0 -2.0 Transcriptional regulator compare
Psest_3761 -1.0 -1.3 Transcription elongation factor compare
Psest_0320 -1.0 -2.8 ABC-type multidrug transport system, ATPase component compare
Psest_3700 -1.0 -0.7 hypothetical protein compare
Psest_3222 -1.0 -1.4 Putative threonine efflux protein compare
Psest_0218 -1.0 -1.5 Acyl-CoA hydrolase compare
Psest_3014 -1.0 -1.1 cob(I)alamin adenosyltransferase compare
Psest_2500 -1.0 -1.1 hypothetical protein compare
Psest_0457 -1.0 -1.6 Lipopolysaccharide kinase (Kdo/WaaP) family. compare


Specific Phenotypes

For 10 genes in this experiment