Experiment set15H23 for Pseudomonas stutzeri RCH2

Compare to:

LB with Vanillin 2 mM

200 most important genes:

  gene name fitness t score description  
Psest_1920 -3.7 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_0028 -3.4 -4.6 Coproporphyrinogen III oxidase compare
Psest_1496 -3.3 -1.2 Holliday junction DNA helicase, RuvA subunit compare
Psest_3960 -2.9 -1.6 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_0466 -2.8 -4.5 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_2872 -2.7 -2.3 protein RecA compare
Psest_2333 -2.4 -1.1 Protein of unknown function (DUF3359). compare
Psest_0309 -2.3 -1.3 RND family efflux transporter, MFP subunit compare
Psest_0958 -2.3 -6.6 Oligoketide cyclase/lipid transport protein compare
Psest_1657 -2.2 -1.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_3307 -2.2 -6.2 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_0078 -2.1 -1.1 hypothetical protein compare
Psest_0969 -2.1 -1.7 transcription elongation factor GreA compare
Psest_1012 -2.1 -4.7 Signal transduction histidine kinase compare
Psest_0489 -2.1 -1.4 phosphoserine phosphatase SerB compare
Psest_2712 -2.1 -3.5 Surface lipoprotein compare
Psest_1704 -2.1 -1.2 Dehydrogenases (flavoproteins) compare
Psest_1656 -2.0 -2.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_1474 -2.0 -3.0 phosphoribosylaminoimidazole synthetase compare
Psest_3304 -2.0 -4.6 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_3962 -1.9 -1.4 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_3303 -1.9 -4.2 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3039 -1.9 -1.2 periplasmic nitrate reductase, NapE protein compare
Psest_3693 -1.9 -2.1 Glycosyltransferases involved in cell wall biogenesis compare
Psest_0575 -1.9 -0.8 HrpA-like helicases compare
Psest_2530 -1.9 -4.7 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_1661 -1.9 -2.1 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_0498 -1.8 -1.1 ribosome small subunit-dependent GTPase A compare
Psest_2786 -1.8 -1.0 Domain of unknown function (DUF3597). compare
Psest_2527 -1.8 -6.9 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_3784 -1.8 -2.4 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_2579 -1.8 -5.0 amidophosphoribosyltransferase compare
Psest_0193 -1.8 -0.9 conserved hypothetical protein compare
Psest_2229 -1.8 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_0161 -1.8 -1.9 Membrane-bound metallopeptidase compare
Psest_4315 -1.8 -2.4 ABC-type metal ion transport system, permease component compare
Psest_3129 -1.8 -1.1 tyrosine recombinase XerD compare
Psest_2025 -1.7 -0.9 cold shock domain protein CspD compare
Psest_0119 -1.7 -2.1 hypothetical protein compare
Psest_2067 -1.7 -1.6 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0417 -1.7 -2.3 Acyl-CoA dehydrogenases compare
Psest_1655 -1.7 -4.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_1686 -1.7 -3.4 fatty acid/phospholipid synthesis protein PlsX compare
Psest_1643 -1.6 -1.0 hypothetical protein compare
Psest_3092 -1.6 -1.4 ribonuclease III, bacterial compare
Psest_4078 -1.6 -1.8 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_4044 -1.6 -1.9 type I site-specific deoxyribonuclease, HsdR family compare
Psest_2630 -1.6 -3.0 hypothetical protein compare
Psest_1659 -1.6 -2.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_4010 -1.6 -1.1 peroxiredoxin, OsmC subfamily compare
Psest_1817 -1.6 -3.9 hypothetical protein compare
Psest_3215 -1.6 -3.6 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Psest_2945 -1.6 -1.1 septum site-determining protein MinC compare
Psest_4191 -1.5 -2.5 Transcriptional regulator compare
Psest_2809 -1.5 -2.6 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_3305 -1.5 -5.7 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_2719 -1.5 -1.5 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_3045 -1.5 -1.7 Cold shock proteins compare
Psest_4095 -1.5 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_2899 -1.5 -1.2 hypothetical protein compare
Psest_3478 -1.5 -1.4 Cytochrome B561 compare
Psest_2585 -1.5 -0.7 pseudouridylate synthase I compare
Psest_2651 -1.5 -3.2 DNA topoisomerase I, bacterial compare
Psest_0999 -1.5 -2.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1001 -1.5 -3.3 hypothetical protein compare
Psest_3421 -1.4 -3.6 hypothetical protein compare
Psest_0067 -1.4 -1.8 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Psest_1008 -1.4 -0.9 hypothetical protein compare
Psest_1037 -1.4 -2.2 acetolactate synthase, small subunit compare
Psest_0066 -1.4 -1.0 Protein of unknown function (DUF3060). compare
Psest_0547 -1.4 -2.6 Urease accessory protein UreF compare
Psest_3168 -1.4 -1.6 Molybdopterin converting factor, large subunit compare
Psest_2768 -1.4 -1.9 Kef-type K+ transport systems, predicted NAD-binding component compare
Psest_4363 -1.4 -4.8 ATPases involved in chromosome partitioning compare
Psest_1397 -1.3 -3.0 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
Psest_3842 -1.3 -3.0 Transcriptional regulators compare
Psest_1226 -1.3 -2.0 hypothetical protein compare
Psest_0313 -1.3 -4.2 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0592 -1.3 -2.2 hypothetical protein compare
Psest_3767 -1.3 -3.8 tyrosine recombinase XerC compare
Psest_2285 -1.3 -2.9 ATP-dependent protease La compare
Psest_2946 -1.3 -2.8 septum site-determining protein MinD compare
Psest_3159 -1.3 -4.7 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_2088 -1.3 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_0442 -1.3 -2.4 ATPases of the AAA+ class compare
Psest_2265 -1.3 -2.9 Outer membrane protein compare
Psest_0601 -1.3 -1.5 hypothetical protein compare
Psest_1457 -1.3 -1.2 FOG: Ankyrin repeat compare
Psest_1295 -1.3 -3.9 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1814 -1.3 -8.4 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2855 -1.3 -1.4 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_3810 -1.3 -1.0 orotate phosphoribosyltransferase compare
Psest_2138 -1.2 -3.0 RND family efflux transporter, MFP subunit compare
Psest_1498 -1.2 -1.5 tol-pal system-associated acyl-CoA thioesterase compare
Psest_1974 -1.2 -2.2 integration host factor, alpha subunit compare
Psest_1582 -1.2 -2.4 Protein of unknown function (DUF3087). compare
Psest_3322 -1.2 -8.8 TIGR02099 family protein compare
Psest_0334 -1.2 -1.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3306 -1.2 -3.8 conserved hypothetical integral membrane protein compare
Psest_2545 -1.2 -1.9 recombination protein RecR compare
Psest_2981 -1.2 -1.5 sodium pump decarboxylases, gamma subunit compare
Psest_3832 -1.2 -1.5 hypothetical protein compare
Psest_2128 -1.2 -3.1 Acyl-CoA dehydrogenases compare
Psest_1489 -1.2 -2.7 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
Psest_0186 -1.2 -3.8 Protein-disulfide isomerase compare
Psest_4219 -1.2 -1.6 DNA polymerase I compare
Psest_1480 -1.2 -1.7 arsenate reductase (glutaredoxin) compare
Psest_0852 -1.2 -3.2 glucose-6-phosphate 1-dehydrogenase compare
Psest_1306 -1.2 -1.3 hypothetical protein compare
Psest_3084 -1.2 -1.5 methyltransferase, putative compare
Psest_3938 -1.2 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_3002 -1.2 -1.3 Putative translation initiation inhibitor, yjgF family compare
Psest_1029 -1.2 -1.7 Regulator of competence-specific genes compare
Psest_4298 -1.2 -0.6 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_0401 -1.1 -1.5 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_2122 -1.1 -0.6 Parvulin-like peptidyl-prolyl isomerase compare
Psest_3790 -1.1 -5.3 Cytochrome c5 compare
Psest_3937 -1.1 -1.5 ATP-dependent protease HslVU, ATPase subunit compare
Psest_4054 -1.1 -2.5 alkanesulfonate monooxygenase, FMNH(2)-dependent compare
Psest_1002 -1.1 -3.6 glutamyl-queuosine tRNA(Asp) synthetase compare
Psest_2232 -1.1 -7.8 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_1631 -1.1 -1.2 Uncharacterized conserved small protein compare
Psest_2123 -1.1 -1.4 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_3496 -1.1 -0.9 Predicted metal-binding protein compare
Psest_3177 -1.1 -1.1 hypothetical protein compare
Psest_3236 -1.1 -2.6 hypothetical protein compare
Psest_0311 -1.1 -2.9 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_0998 -1.1 -1.8 poly(A) polymerase compare
Psest_0510 -1.1 -2.6 iojap-like ribosome-associated protein compare
Psest_3114 -1.1 -3.9 electron transport complex, RnfABCDGE type, C subunit compare
Psest_2491 -1.1 -2.6 succinyl-CoA synthetase, beta subunit compare
Psest_0767 -1.1 -4.5 diguanylate cyclase (GGDEF) domain compare
Psest_2762 -1.1 -1.6 hypothetical protein compare
Psest_3419 -1.1 -3.9 Predicted transcriptional regulators compare
Psest_2725 -1.1 -1.7 hypothetical protein compare
Psest_2266 -1.0 -1.9 hypothetical protein compare
Psest_1804 -1.0 -1.4 Superfamily II DNA and RNA helicases compare
Psest_1510 -1.0 -2.8 Putative Zn-dependent protease, contains TPR repeats compare
Psest_3042 -1.0 -0.8 Nitrate reductase cytochrome c-type subunit compare
Psest_1660 -1.0 -1.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0790 -1.0 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_0359 -1.0 -1.8 Transcriptional regulators compare
Psest_3317 -1.0 -2.5 Phosphotransferase System HPr (HPr) Family compare
Psest_3862 -1.0 -5.5 phosphoenolpyruvate-protein phosphotransferase compare
Psest_2761 -1.0 -2.7 Uncharacterized protein with SCP/PR1 domains compare
Psest_2475 -1.0 -3.1 Acyl-CoA dehydrogenases compare
Psest_1532 -1.0 -1.9 DNA recombination-dependent growth factor C compare
Psest_3115 -1.0 -3.5 electron transport complex, RnfABCDGE type, D subunit compare
Psest_1013 -1.0 -1.9 phosphoribosylamine--glycine ligase compare
Psest_2104 -1.0 -1.3 IscR-regulated protein YhgI compare
Psest_1518 -1.0 -1.5 tRNA_Ser_CGA compare
Psest_2846 -1.0 -2.1 monovalent cation/proton antiporter, MnhG/PhaG subunit compare
Psest_2967 -1.0 -2.1 flagellar basal-body rod protein FlgC compare
Psest_3212 -1.0 -1.5 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1724 -1.0 -1.4 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2490 -1.0 -4.3 succinyl-CoA synthetase, alpha subunit compare
Psest_1022 -0.9 -4.2 Thiol:disulfide interchange protein compare
Psest_2907 -0.9 -0.7 Protein of unknown function (DUF3618). compare
Psest_2744 -0.9 -0.9 Uncharacterized conserved protein compare
Psest_0175 -0.9 -3.1 Xaa-Pro aminopeptidase compare
Psest_2048 -0.9 -1.4 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0243 -0.9 -0.9 hypothetical protein compare
Psest_4134 -0.9 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_3191 -0.9 -1.6 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Psest_0073 -0.9 -2.9 ABC-type multidrug transport system, ATPase and permease components compare
Psest_4396 -0.9 -3.9 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_3228 -0.9 -3.6 Zn-dependent protease with chaperone function compare
Psest_2243 -0.9 -0.8 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_1177 -0.9 -2.5 pyruvate kinase compare
Psest_2253 -0.9 -1.3 small redox-active disulfide protein 2 compare
Psest_0062 -0.9 -3.6 tryptophan synthase, alpha subunit compare
Psest_2714 -0.9 -1.2 7-cyano-7-deazaguanine reductase compare
Psest_2681 -0.9 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_3697 -0.9 -1.4 Outer membrane lipoprotein carrier protein LolA. compare
Psest_3828 -0.9 -0.8 zinc-binding alcohol dehydrogenase family protein compare
Psest_0083 -0.9 -1.2 Uncharacterized conserved protein compare
Psest_1527 -0.9 -4.7 Na+/proline symporter compare
Psest_4152 -0.9 -2.7 flagellar basal-body rod protein FlgC compare
Psest_2334 -0.9 -5.9 Uncharacterized protein conserved in bacteria compare
Psest_2000 -0.9 -2.0 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1994 -0.9 -1.7 Amidases related to nicotinamidase compare
Psest_3768 -0.9 -1.9 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
Psest_2323 -0.9 -5.3 Uncharacterized protein conserved in archaea compare
Psest_1611 -0.9 -2.1 Beta-lactamase class D compare
Psest_0402 -0.9 -1.4 glycosyltransferase, MGT family compare
Psest_3355 -0.8 -2.2 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) compare
Psest_3123 -0.8 -1.1 dihydroorotase, homodimeric type compare
Psest_3659 -0.8 -1.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3812 -0.8 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_0457 -0.8 -1.1 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0765 -0.8 -2.5 hypothetical protein compare
Psest_0357 -0.8 -1.1 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1617 -0.8 -1.5 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Psest_2718 -0.8 -0.6 hypothetical protein compare
Psest_2320 -0.8 -2.3 2-methylcitrate synthase/citrate synthase II compare
Psest_3895 -0.8 -2.4 hypothetical protein compare
Psest_4052 -0.8 -1.9 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_3502 -0.8 -1.6 flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family compare
Psest_1699 -0.8 -2.1 Selenocysteine lyase compare
Psest_4003 -0.8 -1.8 TIGR00153 family protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in stress experiments

For stress Vanillin across organisms