Experiment set15H22 for Pseudomonas stutzeri RCH2

Compare to:

LB with 2-Furfuraldehyde 0.05 vol%

200 most detrimental genes:

  gene name fitness t score description  
Psest_0872 +2.0 3.1 Helix-turn-helix. compare
Psest_3536 +1.8 2.1 hypothetical protein compare
Psest_0609 +1.7 2.8 hypothetical protein compare
Psest_1313 +1.7 2.3 Uncharacterized conserved small protein compare
Psest_2293 +1.7 2.7 hypothetical protein compare
Psest_2764 +1.6 1.9 hypothetical protein compare
Psest_0970 +1.5 3.2 hypothetical protein compare
Psest_3391 +1.4 1.9 Uncharacterized protein conserved in bacteria compare
Psest_4134 +1.4 2.8 Uncharacterized protein conserved in bacteria compare
Psest_2975 +1.4 1.4 tRNA_Arg_CCT compare
Psest_3973 +1.4 2.0 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_2566 +1.3 1.3 Uncharacterized protein conserved in bacteria compare
Psest_1029 +1.3 2.8 Regulator of competence-specific genes compare
Psest_4128 +1.3 1.4 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_3777 +1.2 2.5 diguanylate cyclase (GGDEF) domain compare
Psest_3394 +1.2 5.8 TIGR00645 family protein compare
Psest_0367 +1.2 1.4 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_4170 +1.2 2.3 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_3415 +1.2 8.6 hypothetical protein compare
Psest_3555 +1.1 2.4 Predicted methyltransferase compare
Psest_4049 +1.1 0.9 hypothetical protein compare
Psest_1600 +1.1 2.8 hypothetical protein compare
Psest_3531 +1.1 0.8 Peptidase propeptide and YPEB domain. compare
Psest_1642 +1.1 2.1 Uncharacterized protein conserved in bacteria compare
Psest_1090 +1.1 2.5 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_3395 +1.1 0.7 hypothetical protein compare
Psest_1167 +1.1 1.1 hypothetical protein compare
Psest_1592 +1.1 2.3 hypothetical protein compare
Psest_4043 +1.1 1.6 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_2590 +1.1 1.2 3-isopropylmalate dehydratase, small subunit compare
Psest_2304 +1.0 1.2 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_3573 +1.0 2.6 dTDP-4-dehydrorhamnose reductase compare
Psest_1520 +1.0 2.1 hypothetical protein compare
Psest_4371 +1.0 2.1 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_1540 +1.0 0.9 biotin-dependent carboxylase uncharacterized domain compare
Psest_2752 +1.0 2.2 Uncharacterized protein conserved in bacteria compare
Psest_0831 +1.0 1.1 hypothetical protein compare
Psest_0437 +1.0 2.6 hypothetical protein compare
Psest_1142 +1.0 2.6 Uncharacterized protein conserved in bacteria compare
Psest_2460 +1.0 1.0 hypothetical protein compare
Psest_0014 +1.0 1.9 PilZ domain. compare
Psest_2538 +1.0 1.3 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_3659 +1.0 2.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0312 +1.0 4.2 Superfamily II DNA and RNA helicases compare
Psest_3092 +1.0 1.2 ribonuclease III, bacterial compare
Psest_0988 +1.0 1.6 Protein of unknown function (DUF2845). compare
Psest_3518 +0.9 0.6 Transcriptional regulators compare
Psest_3962 +0.9 1.1 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_2711 +0.9 1.2 PilZ domain. compare
Psest_3270 +0.9 0.8 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_2088 +0.9 1.8 Uncharacterized protein conserved in bacteria compare
Psest_2044 +0.9 1.8 ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system compare
Psest_2899 +0.9 1.0 hypothetical protein compare
Psest_2424 +0.9 1.0 K+ transport systems, NAD-binding component compare
Psest_2953 +0.9 1.4 Histone acetyltransferase compare
Psest_2585 +0.9 0.7 pseudouridylate synthase I compare
Psest_0064 +0.9 1.5 Transcriptional regulator compare
Psest_0393 +0.9 3.0 Methylase of chemotaxis methyl-accepting proteins compare
Psest_2539 +0.9 1.4 adenine phosphoribosyltransferase compare
Psest_2090 +0.9 1.8 Protein of unknown function (DUF2970). compare
Psest_1695 +0.9 2.0 Tfp pilus assembly protein PilZ compare
Psest_2771 +0.9 1.4 Predicted membrane protein compare
Psest_0193 +0.9 0.6 conserved hypothetical protein compare
Psest_4103 +0.8 0.9 AraC-type DNA-binding domain-containing proteins compare
Psest_0708 +0.8 1.4 outer membrane assembly lipoprotein YfiO compare
Psest_2907 +0.8 0.9 Protein of unknown function (DUF3618). compare
Psest_4090 +0.8 1.7 diaminobutyrate acetyltransferase compare
Psest_2911 +0.8 1.0 Protein of unknown function (DUF2945). compare
Psest_4314 +0.8 1.8 ABC-type metal ion transport system, ATPase component compare
Psest_3965 +0.8 2.6 hypothetical protein compare
Psest_0073 +0.8 2.4 ABC-type multidrug transport system, ATPase and permease components compare
Psest_2798 +0.8 1.1 Truncated hemoglobins compare
Psest_2964 +0.8 2.8 flagellar basal-body rod protein FlgF compare
Psest_2768 +0.8 0.9 Kef-type K+ transport systems, predicted NAD-binding component compare
Psest_0260 +0.8 1.0 Cell division protein compare
Psest_1568 +0.8 2.3 hypothetical protein compare
Psest_0814 +0.8 1.3 MoxR-like ATPases compare
Psest_0533 +0.8 2.2 Sel1 repeat. compare
Psest_0390 +0.8 1.3 Short-chain dehydrogenases of various substrate specificities compare
Psest_1691 +0.8 1.3 aminodeoxychorismate lyase compare
Psest_0790 +0.8 1.2 Uncharacterized protein conserved in bacteria compare
Psest_2500 +0.8 1.2 hypothetical protein compare
Psest_0133 +0.8 0.6 type VI secretion protein, VC_A0107 family compare
Psest_4271 +0.8 1.8 Predicted proline hydroxylase compare
Psest_3416 +0.8 4.1 Predicted ATPase (AAA+ superfamily) compare
Psest_4051 +0.8 1.4 molybdenum-pterin binding domain compare
Psest_0869 +0.7 1.5 Acetyltransferase (isoleucine patch superfamily) compare
Psest_0575 +0.7 0.7 HrpA-like helicases compare
Psest_0298 +0.7 2.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1960 +0.7 1.6 Bacterial protein of unknown function (DUF903). compare
Psest_0587 +0.7 1.7 Domain of Unknown Function (DUF326). compare
Psest_3823 +0.7 1.9 hypothetical protein compare
Psest_0637 +0.7 2.7 Short-chain dehydrogenases of various substrate specificities compare
Psest_2778 +0.7 1.2 Parvulin-like peptidyl-prolyl isomerase compare
Psest_0161 +0.7 1.0 Membrane-bound metallopeptidase compare
Psest_2646 +0.7 0.7 SOS regulatory protein LexA compare
Psest_3954 +0.7 1.2 Small protein A (tmRNA-binding) compare
Psest_0902 +0.7 1.7 Predicted transcriptional regulators compare
Psest_3914 +0.7 2.6 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_4335 +0.7 0.9 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_2853 +0.7 1.8 hypothetical protein compare
Psest_3895 +0.7 1.1 hypothetical protein compare
Psest_2348 +0.7 2.6 urea carboxylase-associated protein 2 compare
Psest_0157 +0.7 2.4 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_1611 +0.7 1.9 Beta-lactamase class D compare
Psest_3080 +0.7 1.3 AraC-type DNA-binding domain-containing proteins compare
Psest_4088 +0.7 1.7 Transcriptional regulators compare
Psest_2048 +0.7 1.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2909 +0.7 1.2 hypothetical protein compare
Psest_1218 +0.7 0.8 Predicted endonuclease containing a URI domain compare
Psest_3365 +0.7 2.2 Predicted membrane protein compare
Psest_2480 +0.7 1.6 Methyl-accepting chemotaxis protein compare
Psest_4256 +0.7 1.2 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_0791 +0.7 1.7 Acyl-CoA dehydrogenases compare
Psest_3651 +0.7 1.2 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_2344 +0.7 1.2 Methyl-accepting chemotaxis protein compare
Psest_4001 +0.7 1.6 acetylornithine deacetylase (ArgE) compare
Psest_4142 +0.7 0.7 hypothetical protein compare
Psest_0138 +0.7 3.1 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_2565 +0.7 1.0 Transcriptional regulator compare
Psest_1219 +0.7 2.2 Glutathione S-transferase compare
Psest_2271 +0.7 1.1 coenzyme PQQ biosynthesis protein PqqD compare
Psest_0078 +0.7 0.9 hypothetical protein compare
Psest_4219 +0.7 1.2 DNA polymerase I compare
Psest_3287 +0.7 1.9 Type II secretory pathway, component PulF compare
Psest_2053 +0.7 2.0 Uncharacterized low-complexity proteins compare
Psest_2581 +0.7 1.1 Uncharacterized protein conserved in bacteria compare
Psest_2917 +0.7 2.0 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases compare
Psest_3905 +0.6 1.4 formate dehydrogenase, alpha subunit, archaeal-type compare
Psest_1604 +0.6 1.5 Thiol-disulfide isomerase and thioredoxins compare
Psest_3878 +0.6 1.3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_4285 +0.6 2.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Psest_1681 +0.6 1.4 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
Psest_2058 +0.6 2.4 Zn-dependent hydrolases, including glyoxylases compare
Psest_3106 +0.6 1.9 Predicted outer membrane protein compare
Psest_2022 +0.6 1.6 ADP-ribose pyrophosphatase compare
Psest_3780 +0.6 1.6 Transcriptional regulator compare
Psest_1377 +0.6 1.9 hypothetical protein compare
Psest_0066 +0.6 0.5 Protein of unknown function (DUF3060). compare
Psest_0484 +0.6 1.6 hypothetical protein compare
Psest_2887 +0.6 1.7 Uncharacterized protein conserved in bacteria compare
Psest_1076 +0.6 1.5 acetyl-CoA acetyltransferases compare
Psest_3756 +0.6 1.5 hypothetical protein compare
Psest_3494 +0.6 1.0 hypothetical protein compare
Psest_3393 +0.6 3.1 hypothetical protein compare
Psest_2486 +0.6 1.4 Uncharacterized protein, possibly involved in aromatic compounds catabolism compare
Psest_0622 +0.6 1.5 Disulfide bond formation protein DsbB compare
Psest_2749 +0.6 2.0 Predicted transcriptional regulators compare
Psest_0030 +0.6 1.6 Putative NADH-flavin reductase compare
Psest_0409 +0.6 1.0 Putative homoserine kinase type II (protein kinase fold) compare
Psest_2046 +0.6 0.9 hypothetical protein compare
Psest_1543 +0.6 1.5 Predicted transcription regulator, contains HTH domain (MarR family) compare
Psest_2125 +0.6 1.6 D-gluconate TRAP transporter, periplasmic component (from data) compare
Psest_0785 +0.6 1.3 Thioredoxin reductase compare
Psest_1421 +0.6 1.2 Glutathione S-transferase compare
Psest_2278 +0.6 1.1 coenzyme PQQ biosynthesis protein PqqD compare
Psest_1261 +0.6 1.6 Uncharacterized protein conserved in bacteria compare
Psest_3787 +0.6 1.7 Domain of Unknown Function (DUF1080). compare
Psest_3974 +0.6 2.7 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_3202 +0.6 1.9 Flavodoxins compare
Psest_2391 +0.6 2.8 PAS domain S-box compare
Psest_2364 +0.6 2.1 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
Psest_3203 +0.6 1.2 hypothetical protein compare
Psest_2885 +0.6 1.1 Acyl carrier protein compare
Psest_3715 +0.6 3.6 type IV pilus secretin (or competence protein) PilQ compare
Psest_0578 +0.6 2.9 hypothetical protein compare
Psest_0148 +0.6 1.6 nitrate transport ATP-binding subunits C and D compare
Psest_2988 +0.6 3.0 aspartate kinase, monofunctional class compare
Psest_2411 +0.6 1.5 PAS domain S-box compare
Psest_1631 +0.6 0.9 Uncharacterized conserved small protein compare
Psest_2664 +0.6 2.1 tripartite ATP-independent periplasmic transporter solute receptor, DctP family compare
Psest_2248 +0.6 0.6 Predicted transcriptional regulators compare
Psest_3030 +0.6 2.5 phospho-2-dehydro-3-deoxyheptonate aldolase compare
Psest_2369 +0.6 1.1 Transcriptional regulator compare
Psest_3979 +0.6 0.9 Fructose-2,6-bisphosphatase compare
Psest_1466 +0.6 1.1 transcriptional regulator, Spx/MgsR family compare
Psest_0820 +0.6 1.5 hypothetical protein compare
Psest_4395 +0.6 2.6 hypothetical protein compare
Psest_3173 +0.6 1.4 Uncharacterized protein conserved in bacteria compare
Psest_0070 +0.6 3.3 Glycosyltransferase compare
Psest_0428 +0.6 2.3 phosphonate ABC transporter, ATP-binding protein compare
Psest_1293 +0.6 0.4 VanZ like family. compare
Psest_1746 +0.6 1.7 Flagellar motor protein compare
Psest_2580 +0.6 2.1 Uncharacterized membrane protein, required for colicin V production compare
Psest_4343 +0.6 1.1 Protein of unknown function (DUF3301). compare
Psest_0861 +0.6 1.6 hypothetical protein compare
Psest_0551 +0.5 1.3 PEP phosphonomutase and related enzymes compare
Psest_1605 +0.5 1.9 Protein-disulfide isomerase compare
Psest_3189 +0.5 1.4 hypothetical protein compare
Psest_2451 +0.5 2.4 Glutaredoxin and related proteins compare
Psest_1111 +0.5 0.9 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_2605 +0.5 0.9 transcriptional activator RfaH compare
Psest_4270 +0.5 2.5 TRAP transporter, DctM subunit compare
Psest_2788 +0.5 1.4 Phosphoglycerate dehydrogenase and related dehydrogenases compare
Psest_1183 +0.5 1.2 hydroxyisourate hydrolase compare
Psest_2648 +0.5 0.8 hypothetical protein compare
Psest_3719 +0.5 2.6 type IV pilus assembly protein PilM compare
Psest_3470 +0.5 1.0 Uncharacterized conserved protein compare
Psest_1923 +0.5 1.2 adhesin-associated BNR repeat protein (from data) compare
Psest_1625 +0.5 2.1 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress 2-Furfuraldehyde in Pseudomonas stutzeri RCH2

For stress 2-Furfuraldehyde across organisms