Experiment set15H10 for Pseudomonas stutzeri RCH2

Compare to:

LB with 5-Hydroxymethylfurfural 5 mM

200 most important genes:

  gene name fitness t score description  
Psest_2945 -3.4 -1.5 septum site-determining protein MinC compare
Psest_0028 -3.1 -6.2 Coproporphyrinogen III oxidase compare
Psest_0708 -3.0 -1.8 outer membrane assembly lipoprotein YfiO compare
Psest_4219 -3.0 -3.3 DNA polymerase I compare
Psest_3129 -2.9 -1.5 tyrosine recombinase XerD compare
Psest_3377 -2.6 -1.0 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1167 -2.6 -1.0 hypothetical protein compare
Psest_2651 -2.4 -4.2 DNA topoisomerase I, bacterial compare
Psest_0737 -2.4 -1.0 Cu(I)-responsive transcriptional regulator compare
Psest_3767 -2.3 -4.9 tyrosine recombinase XerC compare
Psest_3092 -2.2 -2.2 ribonuclease III, bacterial compare
Psest_2025 -2.2 -1.0 cold shock domain protein CspD compare
Psest_2872 -2.2 -2.0 protein RecA compare
Psest_3230 -2.1 -5.8 Uncharacterized conserved protein compare
Psest_2946 -2.1 -3.7 septum site-determining protein MinD compare
Psest_1013 -2.0 -2.4 phosphoribosylamine--glycine ligase compare
Psest_2285 -1.9 -3.9 ATP-dependent protease La compare
Psest_0515 -1.9 -4.5 rare lipoprotein A compare
Psest_2101 -1.7 -1.6 hypothetical protein compare
Psest_1505 -1.7 -2.1 Organic radical activating enzymes compare
Psest_2719 -1.7 -2.3 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_3850 -1.7 -0.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0334 -1.7 -3.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0193 -1.7 -1.2 conserved hypothetical protein compare
Psest_3810 -1.7 -1.0 orotate phosphoribosyltransferase compare
Psest_0442 -1.7 -2.7 ATPases of the AAA+ class compare
Psest_2714 -1.7 -1.6 7-cyano-7-deazaguanine reductase compare
Psest_1065 -1.7 -1.6 hypothetical protein compare
Psest_3047 -1.7 -1.1 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_2067 -1.7 -1.5 ABC-type oligopeptide transport system, periplasmic component compare
Psest_1474 -1.7 -3.6 phosphoribosylaminoimidazole synthetase compare
Psest_3478 -1.6 -1.6 Cytochrome B561 compare
Psest_1643 -1.6 -0.7 hypothetical protein compare
Psest_0520 -1.6 -0.7 hypothetical protein compare
Psest_3128 -1.6 -3.2 Protein-disulfide isomerase compare
Psest_3962 -1.6 -1.3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_2243 -1.6 -1.2 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_4406 -1.6 -1.3 hypothetical protein compare
Psest_0225 -1.5 -2.0 Predicted permease, DMT superfamily compare
Psest_3159 -1.5 -6.0 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1451 -1.5 -2.8 Uncharacterized ABC-type transport system, permease components compare
Psest_2791 -1.5 -2.1 hypothetical protein compare
Psest_2590 -1.5 -0.9 3-isopropylmalate dehydratase, small subunit compare
Psest_2232 -1.5 -10.4 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_3908 -1.5 -1.1 Cytochrome c553 compare
Psest_1724 -1.4 -2.2 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_4278 -1.4 -3.1 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_0759 -1.4 -1.3 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_1163 -1.4 -3.9 diguanylate cyclase (GGDEF) domain compare
Psest_0401 -1.4 -1.4 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_3991 -1.4 -2.1 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Psest_3145 -1.4 -1.2 hypothetical protein compare
Psest_1326 -1.4 -2.2 Uncharacterized conserved protein compare
Psest_3860 -1.4 -2.2 Predicted permeases compare
Psest_0992 -1.4 -3.9 Uncharacterized protein conserved in bacteria compare
Psest_1195 -1.4 -2.4 xanthine permease compare
Psest_1595 -1.4 -1.1 Copper chaperone compare
Psest_0662 -1.4 -2.2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1447 -1.3 -4.4 Putative threonine efflux protein compare
Psest_3146 -1.3 -1.2 hypothetical protein compare
Psest_3828 -1.3 -1.0 zinc-binding alcohol dehydrogenase family protein compare
Psest_0958 -1.3 -4.5 Oligoketide cyclase/lipid transport protein compare
Psest_2637 -1.3 -1.1 putative methyltransferase, YaeB/AF_0241 family compare
Psest_3226 -1.3 -0.7 Predicted membrane protein compare
Psest_2933 -1.3 -7.0 Signal transduction histidine kinase compare
Psest_1920 -1.3 -0.7 Uncharacterized protein conserved in bacteria compare
Psest_2967 -1.3 -2.2 flagellar basal-body rod protein FlgC compare
Psest_4241 -1.3 -3.7 hypothetical protein compare
Psest_4209 -1.2 -1.7 Uncharacterized conserved small protein compare
Psest_3178 -1.2 -2.5 formyltetrahydrofolate deformylase compare
Psest_0969 -1.2 -1.3 transcription elongation factor GreA compare
Psest_1366 -1.2 -1.2 hypothetical protein compare
Psest_1179 -1.2 -1.4 2-hydroxy-3-oxopropionate reductase compare
Psest_0999 -1.2 -1.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2894 -1.2 -2.0 addiction module antidote protein, HigA family compare
Psest_3476 -1.2 -1.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0655 -1.2 -1.5 Chemotaxis signal transduction protein compare
Psest_0822 -1.2 -3.4 Transcriptional regulators compare
Psest_4044 -1.2 -2.7 type I site-specific deoxyribonuclease, HsdR family compare
Psest_1657 -1.2 -1.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_1506 -1.1 -4.0 queuosine biosynthesis protein QueC compare
Psest_3904 -1.1 -1.2 hypothetical protein compare
Psest_3449 -1.1 -1.5 DJ-1 family protein compare
Psest_3752 -1.1 -3.9 hypothetical protein compare
Psest_0357 -1.1 -1.7 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2293 -1.1 -0.9 hypothetical protein compare
Psest_0872 -1.1 -0.7 Helix-turn-helix. compare
Psest_3270 -1.1 -1.1 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_2748 -1.1 -1.0 Transcriptional regulator compare
Psest_3419 -1.1 -3.3 Predicted transcriptional regulators compare
Psest_4405 -1.1 -1.4 hypothetical protein compare
Psest_1008 -1.1 -0.8 hypothetical protein compare
Psest_2744 -1.1 -0.8 Uncharacterized conserved protein compare
Psest_3545 -1.1 -2.2 clan AA aspartic protease, TIGR02281 family compare
Psest_4128 -1.0 -1.0 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_1752 -1.0 -1.0 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_1485 -1.0 -2.9 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Psest_2743 -1.0 -2.4 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Psest_3113 -1.0 -1.3 electron transport complex, RnfABCDGE type, B subunit compare
Psest_1837 -1.0 -2.6 Endoglucanase compare
Psest_4064 -1.0 -2.3 Lactate dehydrogenase and related dehydrogenases compare
Psest_1270 -1.0 -3.2 hypothetical protein compare
Psest_3535 -1.0 -1.5 hypothetical protein compare
Psest_4052 -1.0 -2.6 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_3123 -1.0 -1.3 dihydroorotase, homodimeric type compare
Psest_3922 -1.0 -2.3 Response regulator of citrate/malate metabolism compare
Psest_1035 -1.0 -2.8 hypothetical protein compare
Psest_1919 -1.0 -1.5 Uncharacterized membrane protein (homolog of Drosophila rhomboid) compare
Psest_0021 -1.0 -2.7 ribosomal RNA small subunit methyltransferase RsmB compare
Psest_1463 -1.0 -0.6 SufE protein probably involved in Fe-S center assembly compare
Psest_1750 -1.0 -1.3 Protein of unknown function (DUF2802). compare
Psest_2940 -1.0 -1.8 Predicted membrane protein compare
Psest_2957 -1.0 -2.2 competence protein ComEA helix-hairpin-helix repeat region compare
Psest_1295 -1.0 -2.8 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3842 -0.9 -1.8 Transcriptional regulators compare
Psest_3736 -0.9 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_1486 -0.9 -1.9 hypothetical protein compare
Psest_3937 -0.9 -0.7 ATP-dependent protease HslVU, ATPase subunit compare
Psest_2104 -0.9 -1.2 IscR-regulated protein YhgI compare
Psest_0051 -0.9 -2.9 hypothetical protein compare
Psest_1805 -0.9 -1.2 integration host factor, beta subunit compare
Psest_2346 -0.9 -3.3 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
Psest_2860 -0.9 -2.1 hypothetical protein compare
Psest_1876 -0.9 -2.4 Predicted membrane protein compare
Psest_2911 -0.9 -1.1 Protein of unknown function (DUF2945). compare
Psest_2976 -0.9 -0.9 hypothetical protein compare
Psest_0846 -0.9 -2.8 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_2712 -0.9 -2.6 Surface lipoprotein compare
Psest_0297 -0.9 -1.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2634 -0.9 -2.5 glycine betaine aldehyde dehydrogenase compare
Psest_2953 -0.9 -0.8 Histone acetyltransferase compare
Psest_4220 -0.9 -1.8 Protein of unknown function (DUF2782). compare
Psest_0845 -0.9 -0.5 hypothetical protein compare
Psest_1731 -0.9 -1.0 flagellar biosynthetic protein FliO compare
Psest_4042 -0.9 -1.4 hypothetical protein compare
Psest_0133 -0.9 -0.8 type VI secretion protein, VC_A0107 family compare
Psest_3002 -0.9 -1.3 Putative translation initiation inhibitor, yjgF family compare
Psest_3766 -0.9 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_2088 -0.8 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_1049 -0.8 -1.4 Uncharacterized paraquat-inducible protein A compare
Psest_4393 -0.8 -2.8 Capsule polysaccharide export protein compare
Psest_1120 -0.8 -1.7 uracil phosphoribosyltransferase compare
Psest_3862 -0.8 -5.4 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3338 -0.8 -0.9 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_1677 -0.8 -1.1 Protein-tyrosine-phosphatase compare
Psest_2579 -0.8 -2.7 amidophosphoribosyltransferase compare
Psest_0417 -0.8 -1.3 Acyl-CoA dehydrogenases compare
Psest_3056 -0.8 -2.3 hypothetical protein compare
Psest_0919 -0.8 -1.1 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_3507 -0.8 -2.4 FOG: EAL domain compare
Psest_1947 -0.8 -0.5 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_3024 -0.8 -2.7 cytochrome d oxidase, subunit II (cydB) compare
Psest_4054 -0.8 -1.7 alkanesulfonate monooxygenase, FMNH(2)-dependent compare
Psest_3004 -0.8 -3.7 cobalamin 5'-phosphate synthase/cobalamin synthase compare
Psest_1749 -0.8 -2.9 Chemotaxis signal transduction protein compare
Psest_3754 -0.8 -2.6 Uncharacterized protein involved in response to NO compare
Psest_1860 -0.8 -1.4 Uncharacterized conserved protein compare
Psest_0207 -0.8 -1.7 hypothetical protein compare
Psest_1542 -0.8 -2.8 Uncharacterized proteins, homologs of lactam utilization protein B compare
Psest_3031 -0.8 -0.3 hypothetical protein compare
Psest_1528 -0.8 -2.8 Acetyltransferases, including N-acetylases of ribosomal proteins compare
Psest_0955 -0.8 -3.5 D,L-lactate:H+ symporter (from data) compare
Psest_1125 -0.8 -2.1 Protein of unknown function (DUF3509). compare
Psest_3496 -0.8 -0.8 Predicted metal-binding protein compare
Psest_2448 -0.8 -2.1 AraC-type DNA-binding domain-containing proteins compare
Psest_2853 -0.8 -1.4 hypothetical protein compare
Psest_1607 -0.8 -2.8 Acetyltransferases compare
Psest_0175 -0.8 -2.8 Xaa-Pro aminopeptidase compare
Psest_0152 -0.8 -2.0 Imidazoleglycerol-phosphate dehydratase compare
Psest_1824 -0.8 -1.4 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_2517 -0.8 -1.5 hypothetical protein compare
Psest_2367 -0.7 -2.8 glutamine synthetase, type III compare
Psest_3853 -0.7 -1.1 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_4100 -0.7 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_0191 -0.7 -0.6 PAS domain S-box compare
Psest_3447 -0.7 -0.9 Uncharacterized MobA-related protein compare
Psest_1611 -0.7 -2.2 Beta-lactamase class D compare
Psest_0862 -0.7 -1.7 Glycosidases compare
Psest_0498 -0.7 -0.6 ribosome small subunit-dependent GTPase A compare
Psest_3014 -0.7 -1.0 cob(I)alamin adenosyltransferase compare
Psest_2470 -0.7 -1.2 hypothetical protein compare
Psest_2414 -0.7 -2.0 TolR protein compare
Psest_3537 -0.7 -2.3 hypothetical protein compare
Psest_0402 -0.7 -1.7 glycosyltransferase, MGT family compare
Psest_0066 -0.7 -0.9 Protein of unknown function (DUF3060). compare
Psest_2866 -0.7 -2.2 Uncharacterized conserved protein compare
Psest_1087 -0.7 -0.6 uncharacterized peroxidase-related enzyme compare
Psest_1462 -0.7 -1.9 3-oxoacyl-[acyl-carrier-protein] synthase III compare
Psest_0189 -0.7 -3.0 Negative regulator of beta-lactamase expression compare
Psest_2425 -0.7 -1.5 Trk-type K+ transport systems, membrane components compare
Psest_3177 -0.7 -0.7 hypothetical protein compare
Psest_1360 -0.7 -2.0 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_3215 -0.7 -2.0 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Psest_2703 -0.7 -1.7 ATPases involved in chromosome partitioning compare
Psest_3291 -0.7 -3.6 Lipid A core - O-antigen ligase and related enzymes compare
Psest_3172 -0.7 -2.5 cation diffusion facilitator family transporter compare
Psest_1367 -0.7 -1.2 hypothetical protein compare
Psest_2923 -0.7 -0.8 hypothetical protein compare
Psest_3228 -0.7 -3.3 Zn-dependent protease with chaperone function compare
Psest_2463 -0.7 -2.5 Predicted esterase of the alpha-beta hydrolase superfamily compare


Specific Phenotypes

For 1 genes in this experiment

For stress 5-Hydroxymethylfurfural in Pseudomonas stutzeri RCH2

For stress 5-Hydroxymethylfurfural across organisms