Experiment set14S97 for Phocaeicola vulgatus CL09T03C04

Compare to:

D-Mannose 10 mM carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS14795 -6.5 -6.3 prephenate dehydratase compare
HMPREF1058_RS08640 -6.5 -2.4 acetylornithine carbamoyltransferase compare
HMPREF1058_RS14545 -6.2 -12.1 2-isopropylmalate synthase compare
HMPREF1058_RS07190 -6.2 -7.9 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS07170 -6.0 -13.4 tryptophan synthase subunit beta compare
HMPREF1058_RS06170 -5.9 -7.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1058_RS14785 -5.9 -9.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS14550 -5.8 -15.4 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS12780 -5.6 -14.0 M20 family metallo-hydrolase compare
HMPREF1058_RS14730 -5.6 -11.0 threonine synthase compare
HMPREF1058_RS15885 -5.6 -10.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1058_RS03800 -5.5 -11.2 serine hydroxymethyltransferase compare
HMPREF1058_RS07195 -5.4 -4.5 phosphoribosylanthranilate isomerase compare
HMPREF1058_RS08645 -5.4 -12.1 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS08025 -5.4 -9.7 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS17940 -5.3 -6.3 alpha-amylase compare
HMPREF1058_RS07200 -5.2 -11.9 tryptophan synthase subunit alpha compare
HMPREF1058_RS14770 -5.2 -11.7 prephenate dehydrogenase compare
HMPREF1058_RS12115 -5.2 -10.9 acetylglutamate kinase compare
HMPREF1058_RS16760 -5.2 -4.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS05145 -5.2 -9.3 ATP-binding protein compare
HMPREF1058_RS08840 -5.2 -9.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS08650 -5.2 -12.3 glutamate 5-kinase compare
HMPREF1058_RS14560 -5.2 -13.9 2-isopropylmalate synthase compare
HMPREF1058_RS07175 -5.2 -13.3 anthranilate synthase component I family protein compare
HMPREF1058_RS17935 -5.1 -8.5 glycosyltransferase compare
HMPREF1058_RS09585 -5.1 -20.9 argininosuccinate lyase compare
HMPREF1058_RS15075 -5.0 -12.5 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS15870 -5.0 -12.0 ATP phosphoribosyltransferase compare
HMPREF1058_RS09675 -5.0 -5.1 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS15880 -5.0 -14.4 histidinol-phosphate transaminase compare
HMPREF1058_RS14790 -5.0 -15.8 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS14725 -5.0 -10.1 cofactor-independent phosphoglycerate mutase compare
HMPREF1058_RS08845 -4.9 -11.1 argininosuccinate synthase compare
HMPREF1058_RS10075 -4.9 -16.0 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS07955 -4.9 -18.7 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS03910 -4.9 -6.7 alpha amylase C-terminal domain-containing protein compare
HMPREF1058_RS16815 -4.8 -17.1 dihydroxy-acid dehydratase compare
HMPREF1058_RS08830 -4.8 -8.3 pyrroline-5-carboxylate reductase compare
HMPREF1058_RS13795 -4.8 -14.1 DUF4954 family protein compare
HMPREF1058_RS15875 -4.7 -12.2 histidinol dehydrogenase compare
HMPREF1058_RS10080 -4.7 -18.4 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS17985 -4.7 -14.0 ATP-binding cassette domain-containing protein compare
HMPREF1058_RS17035 -4.7 -11.4 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1058_RS14720 -4.7 -18.3 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1058_RS08325 -4.7 -6.8 pyridoxine 5'-phosphate synthase compare
HMPREF1058_RS14610 -4.7 -16.8 adenylosuccinate synthase compare
HMPREF1058_RS06165 -4.7 -8.7 imidazole glycerol phosphate synthase subunit HisH compare
HMPREF1058_RS06195 -4.6 -12.9 diaminopimelate decarboxylase compare
HMPREF1058_RS14565 -4.6 -14.2 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS11040 -4.6 -5.6 polysaccharide deacetylase family protein compare
HMPREF1058_RS10820 -4.6 -17.5 4-phosphoerythronate dehydrogenase PdxB compare
HMPREF1058_RS10995 -4.5 -11.3 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS11270 -4.5 -11.0 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS16820 -4.5 -13.6 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS12105 -4.5 -7.0 shikimate kinase compare
HMPREF1058_RS16835 -4.5 -11.2 ketol-acid reductoisomerase compare
HMPREF1058_RS08835 -4.5 -9.8 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS18265 -4.5 -4.3 aspartate 1-decarboxylase compare
HMPREF1058_RS04295 -4.5 -5.3 3-phosphoglycerate dehydrogenase compare
HMPREF1058_RS06180 -4.4 -7.5 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS04065 -4.4 -1.9 VWA domain-containing protein compare
HMPREF1058_RS17885 -4.4 -18.4 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
HMPREF1058_RS03970 -4.4 -3.0 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1058_RS06225 -4.3 -3.0 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1058_RS14555 -4.3 -3.7 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS17060 -4.3 -5.9 HAD family hydrolase compare
HMPREF1058_RS02220 -4.3 -3.0 branched-chain amino acid aminotransferase compare
HMPREF1058_RS01650 -4.2 -8.2 hypothetical protein compare
HMPREF1058_RS17775 -4.2 -5.8 hypothetical protein compare
HMPREF1058_RS15565 -4.2 -20.2 hypothetical protein compare
HMPREF1058_RS04045 -4.2 -4.9 tetratricopeptide repeat protein compare
HMPREF1058_RS08850 -4.2 -8.4 N-acetyltransferase compare
HMPREF1058_RS07185 -4.1 -10.2 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS15395 -4.1 -2.8 dihydroorotase compare
HMPREF1058_RS10840 -4.1 -3.0 hypothetical protein compare
HMPREF1058_RS12490 -4.1 -3.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS04080 -4.1 -2.8 AAA family ATPase compare
HMPREF1058_RS17040 -4.1 -6.2 NTP transferase domain-containing protein compare
HMPREF1058_RS03000 -4.0 -11.1 IMP dehydrogenase compare
HMPREF1058_RS17050 -4.0 -8.8 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1058_RS13970 -3.9 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS00560 -3.9 -4.5 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS02115 -3.8 -12.1 NADP-specific glutamate dehydrogenase compare
HMPREF1058_RS05780 -3.8 -12.6 PD40 domain-containing protein compare
HMPREF1058_RS05140 -3.8 -2.6 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS07040 -3.8 -13.9 tetratricopeptide repeat protein compare
HMPREF1058_RS04270 -3.8 -2.1 ferredoxin compare
HMPREF1058_RS17155 -3.7 -2.6 dCMP deaminase family protein compare
HMPREF1058_RS02170 -3.7 -8.9 hypothetical protein compare
HMPREF1058_RS13635 -3.7 -5.0 gliding motility lipoprotein GldH compare
HMPREF1058_RS11730 -3.7 -2.2 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS04300 -3.6 -7.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS00700 -3.6 -10.3 DUF4831 family protein compare
HMPREF1058_RS13655 -3.6 -12.5 cardiolipin synthase compare
HMPREF1058_RS14490 -3.6 -14.9 S9 family peptidase compare
HMPREF1058_RS08855 -3.6 -9.4 arginine repressor compare
HMPREF1058_RS17075 -3.6 -13.3 inositol-3-phosphate synthase compare
HMPREF1058_RS00590 -3.5 -5.3 hypothetical protein compare
HMPREF1058_RS15665 -3.5 -9.6 MFS transporter compare
HMPREF1058_RS17045 -3.4 -4.0 hypothetical protein compare
HMPREF1058_RS16730 -3.4 -4.1 chorismate synthase compare
HMPREF1058_RS16825 -3.4 -8.1 acetolactate synthase small subunit compare
HMPREF1058_RS06175 -3.4 -5.8 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS01745 -3.3 -5.4 PorT family protein compare
HMPREF1058_RS11625 -3.3 -15.7 S41 family peptidase compare
HMPREF1058_RS11205 -3.2 -1.6 radical SAM protein compare
HMPREF1058_RS04070 -3.1 -2.2 hypothetical protein compare
HMPREF1058_RS06160 -3.1 -6.8 formyltetrahydrofolate deformylase compare
HMPREF1058_RS01640 -3.1 -16.2 BamA/TamA family outer membrane protein compare
HMPREF1058_RS07205 -3.0 -7.9 type I asparaginase compare
HMPREF1058_RS02800 -3.0 -7.1 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS16625 -3.0 -8.6 hypothetical protein compare
HMPREF1058_RS01655 -3.0 -9.4 DUF4296 domain-containing protein compare
HMPREF1058_RS04050 -2.9 -2.8 protein BatD compare
HMPREF1058_RS02110 -2.9 -12.6 NADP-dependent malic enzyme compare
HMPREF1058_RS06190 -2.9 -4.4 aspartate kinase compare
HMPREF1058_RS04075 -2.8 -2.7 DUF58 domain-containing protein compare
HMPREF1058_RS16855 -2.8 -1.0 LPS export ABC transporter periplasmic protein LptC compare
HMPREF1058_RS14590 -2.8 -1.9 AraC family transcriptional regulator compare
HMPREF1058_RS14920 -2.8 -10.8 serine dehydratase subunit alpha family protein compare
HMPREF1058_RS06560 -2.7 -6.6 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1058_RS09685 -2.7 -11.0 tetratricopeptide repeat protein compare
HMPREF1058_RS03245 -2.6 -2.4 thiamine phosphate synthase compare
HMPREF1058_RS07180 -2.6 -4.2 aminodeoxychorismate/anthranilate synthase component II compare
HMPREF1058_RS10965 -2.6 -10.5 cation transporter compare
HMPREF1058_RS12795 -2.6 -6.4 CYTH domain-containing protein compare
HMPREF1058_RS17950 -2.6 -7.6 biotin synthase BioB compare
HMPREF1058_RS02990 -2.6 -5.4 peptidyl-prolyl cis-trans isomerase compare
HMPREF1058_RS21475 -2.5 -1.3 smalltalk protein compare
HMPREF1058_RS00540 -2.5 -8.4 M23 family metallopeptidase compare
HMPREF1058_RS06310 -2.5 -8.2 UDP-glucose 4-epimerase GalE compare
HMPREF1058_RS02080 -2.5 -12.2 TolC family protein compare
HMPREF1058_RS07735 -2.5 -3.8 chloride channel protein compare
HMPREF1058_RS10720 -2.5 -6.0 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS15570 -2.5 -15.2 hypothetical protein compare
HMPREF1058_RS02070 -2.4 -13.7 efflux RND transporter permease subunit compare
HMPREF1058_RS09610 -2.4 -5.9 peptide chain release factor N(5)-glutamine methyltransferase compare
HMPREF1058_RS03295 -2.3 -1.9 sulfur carrier protein ThiS compare
HMPREF1058_RS16845 -2.3 -5.1 SurA N-terminal domain-containing protein compare
HMPREF1058_RS14215 -2.3 -3.7 (d)CMP kinase compare
HMPREF1058_RS06330 -2.3 -5.4 RnfABCDGE type electron transport complex subunit G compare
HMPREF1058_RS04365 -2.3 -13.5 translocation/assembly module TamB compare
HMPREF1058_RS08275 -2.3 -10.9 DoxX family protein compare
HMPREF1058_RS17130 -2.3 -2.0 tetratricopeptide repeat protein compare
HMPREF1058_RS06335 -2.3 -9.0 RnfABCDGE type electron transport complex subunit D compare
HMPREF1058_RS17960 -2.2 -9.6 8-amino-7-oxononanoate synthase compare
HMPREF1058_RS02065 -2.2 -1.5 hypothetical protein compare
HMPREF1058_RS15895 -2.2 -4.7 transcriptional repressor compare
HMPREF1058_RS15520 -2.2 -5.1 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS01800 -2.2 -5.0 crossover junction endodeoxyribonuclease RuvC compare
HMPREF1058_RS00515 -2.2 -5.8 YicC family protein compare
HMPREF1058_RS02105 -2.2 -8.3 efflux RND transporter periplasmic adaptor subunit compare
HMPREF1058_RS15575 -2.2 -7.2 DUF4421 domain-containing protein compare
HMPREF1058_RS17025 -2.2 -7.4 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
HMPREF1058_RS01925 -2.2 -4.5 helix-turn-helix domain-containing protein compare
HMPREF1058_RS04035 -2.2 -3.6 hypothetical protein compare
HMPREF1058_RS10835 -2.2 -6.0 UDP-galactopyranose mutase compare
HMPREF1058_RS10955 -2.2 -6.0 phosphatase PAP2 family protein compare
HMPREF1058_RS12575 -2.2 -12.1 mannose-1-phosphate guanylyltransferase compare
HMPREF1058_RS08065 -2.1 -9.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
HMPREF1058_RS07285 -2.1 -11.3 ROK family transcriptional regulator compare
HMPREF1058_RS02755 -2.1 -1.5 translocation/assembly module TamB domain-containing protein compare
HMPREF1058_RS17815 -2.1 -7.1 MFS transporter compare
HMPREF1058_RS09690 -2.1 -10.4 DUF4369 domain-containing protein compare
HMPREF1058_RS16620 -2.1 -7.1 GGGtGRT protein compare
HMPREF1058_RS10850 -2.1 -9.4 glycosyltransferase family 2 protein compare
HMPREF1058_RS00565 -2.1 -8.0 hemolysin III family protein compare
HMPREF1058_RS06080 -2.1 -8.4 glutamine synthetase III compare
HMPREF1058_RS06320 -2.1 -7.3 electron transport complex subunit RsxA compare
HMPREF1058_RS15710 -2.1 -5.5 cytidine deaminase compare
HMPREF1058_RS15435 -2.1 -6.2 hypothetical protein compare
HMPREF1058_RS17975 -2.0 -6.6 ATP-dependent dethiobiotin synthetase BioD compare
HMPREF1058_RS03530 -2.0 -1.4 PD-(D/E)XK nuclease family protein compare
HMPREF1058_RS17190 -2.0 -5.8 hypothetical protein compare
HMPREF1058_RS17945 -2.0 -6.1 hypothetical protein compare
HMPREF1058_RS08060 -2.0 -5.2 hypothetical protein compare
HMPREF1058_RS06060 -2.0 -6.2 YegS/Rv2252/BmrU family lipid kinase compare
HMPREF1058_RS12345 -2.0 -10.3 4-alpha-glucanotransferase compare
HMPREF1058_RS02075 -1.9 -6.5 efflux RND transporter periplasmic adaptor subunit compare
HMPREF1058_RS08780 -1.9 -7.4 4Fe-4S binding protein compare
HMPREF1058_RS05035 -1.9 -10.4 C69 family dipeptidase compare
HMPREF1058_RS18400 -1.9 -5.0 RidA family protein compare
HMPREF1058_RS15855 -1.9 -6.7 uridine kinase compare
HMPREF1058_RS01995 -1.9 -3.4 hypothetical protein compare
HMPREF1058_RS05360 -1.9 -1.7 helix-turn-helix domain-containing protein compare
HMPREF1058_RS04550 -1.9 -2.0 hypothetical protein compare
HMPREF1058_RS16890 -1.8 -11.2 hypothetical protein compare
HMPREF1058_RS03285 -1.8 -5.2 thiazole synthase compare
HMPREF1058_RS03280 -1.8 -9.5 phosphomethylpyrimidine synthase ThiC compare
HMPREF1058_RS08295 -1.8 -5.6 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS00435 -1.8 -8.0 zeta toxin family protein compare
HMPREF1058_RS10160 -1.8 -1.6 hypothetical protein compare
HMPREF1058_RS17955 -1.8 -7.1 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
HMPREF1058_RS00595 -1.8 -2.3 Holliday junction branch migration protein RuvA compare
HMPREF1058_RS03075 -1.8 -4.4 DNA helicase RecQ compare
HMPREF1058_RS03260 -1.8 -8.0 HesA/MoeB/ThiF family protein compare
HMPREF1058_RS16070 -1.8 -6.4 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS02750 -1.8 -1.2 BamA/TamA family outer membrane protein compare
HMPREF1058_RS07060 -1.8 -5.7 DUF3869 domain-containing protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source D-Mannose in Phocaeicola vulgatus CL09T03C04

For carbon source D-Mannose across organisms