Experiment set14S707 for Methanococcus maripaludis S2

Compare to:

McCas_formate_complete sodium nitrite 0.25 mM

200 most important genes:

  gene name fitness t score description  
MMP_RS04710 -6.9 -2.8 hypothetical protein compare
MMP_RS07630 -6.4 -2.5 ATP-binding cassette domain-containing protein compare
MMP_RS01795 -6.0 -2.4 methanogenesis marker 6 protein compare
MMP_RS01020 -5.8 -1.4 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS08720 -4.9 -2.3 4Fe-4S binding protein compare
MMP_RS06230 -4.9 -4.0 helix-turn-helix domain-containing protein compare
MMP_RS02900 -4.8 -1.1 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS05845 -4.7 -2.8 tRNA-intron lyase compare
MMP_RS04870 -4.7 -5.3 TIGR02253 family HAD-type hydrolase compare
MMP_RS07615 -4.6 -6.9 energy-coupling factor ABC transporter permease compare
MMP_RS08745 -4.4 -9.3 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS00300 -4.3 -1.0 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS03600 -4.2 -3.2 triose-phosphate isomerase compare
MMP_RS01225 -4.2 -5.8 DUF5379 domain-containing protein compare
MMP_RS03015 -4.1 -11.6 GTP 3' 8-cyclase MoaA compare
MMP_RS07620 -4.1 -7.8 energy-coupling factor ABC transporter substrate-binding protein compare
MMP_RS06345 -4.0 -11.0 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS03315 -3.9 -2.2 ferrous iron transport protein A compare
MMP_RS04890 -3.9 -1.3 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS02165 -3.8 -6.8 tRNA-dihydrouridine synthase compare
MMP_RS05515 -3.8 -8.6 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS08210 -3.8 -2.4 phosphatidylglycerophosphatase A compare
MMP_RS02240 -3.8 -3.5 methanogenesis marker 7 protein compare
MMP_RS00130 -3.7 -1.8 nickel-responsive transcriptional regulator NikR compare
MMP_RS01800 -3.7 -4.1 TIGR00303 family protein compare
MMP_RS06350 -3.7 -5.4 HesA/MoeB/ThiF family protein compare
MMP_RS00305 -3.6 -2.7 phosphoribosyl-ATP diphosphatase compare
MMP_RS06355 -3.6 -2.0 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS01380 -3.5 -6.3 PHP domain-containing protein compare
MMP_RS02235 -3.5 -9.4 CBS domain-containing protein compare
MMP_RS02345 -3.5 -3.9 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS06730 -3.4 -2.6 phosphopantothenate/pantothenate synthetase compare
MMP_RS08300 -3.4 -1.9 metal-sulfur cluster assembly factor compare
MMP_RS06975 -3.3 -3.4 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS08715 -3.2 -2.7 formylmethanofuran dehydrogenase subunit B compare
MMP_RS07380 -3.2 -3.4 transcription elongation factor Spt5 compare
MMP_RS04685 -3.2 -4.0 DUF126 domain-containing protein compare
MMP_RS08635 -3.2 -3.1 UbiA family prenyltransferase compare
MMP_RS01610 -3.2 -3.8 hypothetical protein compare
MMP_RS03770 -3.2 -13.0 hydroxylamine reductase conserved
MMP_RS07635 -3.1 -5.8 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS06270 -3.1 -7.0 TIGR00300 family protein compare
MMP_RS00685 -3.1 -4.8 2-phospho-L-lactate guanylyltransferase compare
MMP_RS04780 -3.0 -4.4 ribonuclease P compare
MMP_RS03025 -3.0 -4.7 molybdenum cofactor guanylyltransferase compare
MMP_RS07625 -3.0 -2.7 cobalt ECF transporter T component CbiQ compare
MMP_RS01665 -2.9 -3.4 DUF2111 domain-containing protein compare
MMP_RS08435 -2.9 -3.3 Era-like GTP-binding protein compare
MMP_RS03445 -2.8 -1.5 methanogenesis marker 17 protein compare
MMP_RS06315 -2.7 -1.2 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS07820 -2.7 -6.1 UPF0104 family protein compare
MMP_RS01175 -2.7 -3.3 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS01500 -2.7 -2.1 CBS domain-containing protein compare
MMP_RS06175 -2.6 -6.7 winged helix-turn-helix transcriptional regulator compare
MMP_RS02875 -2.6 -9.9 chorismate pyruvate-lyase family protein compare
MMP_RS06895 -2.6 -2.0 selenocysteine-specific translation elongation factor compare
MMP_RS06295 -2.5 -5.5 methanogenesis marker 14 protein compare
MMP_RS04585 -2.5 -10.0 AIR synthase related protein compare
MMP_RS07445 -2.4 -4.7 helix-turn-helix domain-containing protein compare
MMP_RS08820 -2.4 -6.5 hypothetical protein compare
MMP_RS08790 -2.4 -3.3 translation initiation factor IF-2 subunit alpha compare
MMP_RS06110 -2.4 -3.9 ATP-dependent protease LonB compare
MMP_RS05765 -2.3 -6.3 M42 family metallopeptidase compare
MMP_RS07735 -2.3 -1.1 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS06715 -2.3 -11.1 cache domain-containing protein compare
MMP_RS00915 -2.3 -6.8 DUF116 domain-containing protein compare
MMP_RS03400 -2.2 -3.6 archease compare
MMP_RS01325 -2.2 -2.5 dihydroneopterin aldolase family protein compare
MMP_RS00185 -2.2 -14.9 potassium channel protein compare
MMP_RS08645 -2.2 -7.2 UPF0179 family protein compare
MMP_RS06720 -2.2 -7.2 response regulator transcription factor compare
MMP_RS02340 -2.1 -3.2 DNA-directed RNA polymerase subunit E'' compare
MMP_RS08460 -2.1 -2.5 proteasome-activating nucleotidase compare
MMP_RS04875 -2.1 -4.6 energy-converting hydrogenase B subunit P compare
MMP_RS05430 -2.1 -2.8 TIGR00288 family NYN domain-containing protein compare
MMP_RS06120 -2.1 -1.6 UPF0147 family protein compare
MMP_RS01265 -2.1 -2.0 hypothetical protein compare
MMP_RS07390 -2.1 -2.9 cell division protein FtsZ compare
MMP_RS07545 -2.1 -1.2 HTH domain-containing protein compare
MMP_RS06725 -2.0 -11.6 hypothetical protein compare
MMP_RS07005 -2.0 -0.8 4Fe-4S binding protein compare
MMP_RS00985 -2.0 -4.8 CDC48 family AAA ATPase compare
MMP_RS07765 -2.0 -10.0 sodium:alanine symporter family protein compare
MMP_RS05510 -2.0 -8.2 Rrf2 family transcriptional regulator compare
MMP_RS03250 -2.0 -3.7 MJ1244 family protein compare
MMP_RS06685 -2.0 -8.7 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS09020 -1.9 -2.0 hypothetical protein compare
MMP_RS07365 -1.9 -9.8 2-phosphoglycerate kinase compare
MMP_RS06600 -1.9 -2.0 class III signal peptide-containing protein compare
MMP_RS02355 -1.9 -2.7 30S ribosomal protein S27ae compare
MMP_RS06020 -1.9 -3.4 archaeoflavoprotein AfpA compare
MMP_RS06285 -1.9 -2.1 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS06625 -1.9 -2.5 DNA primase compare
MMP_RS01005 -1.8 -1.0 riboflavin synthase compare
MMP_RS07555 -1.8 -1.0 monovalent cation/H+ antiporter subunit E compare
MMP_RS07775 -1.8 -5.7 alanine dehydrogenase compare
MMP_RS01980 -1.8 -12.4 trimeric intracellular cation channel family protein compare
MMP_RS00310 -1.8 -7.6 CBS domain-containing protein compare
MMP_RS03580 -1.8 -2.8 signal recognition particle-docking protein FtsY compare
MMP_RS05105 -1.8 -12.0 thymidylate synthase compare
MMP_RS01215 -1.8 -7.3 sodium/proline symporter PutP compare
MMP_RS00110 -1.8 -3.0 hypothetical protein compare
MMP_RS06680 -1.7 -8.0 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS05550 -1.7 -0.9 cation:proton antiporter compare
MMP_RS06855 -1.7 -9.1 hypothetical protein compare
MMP_RS06700 -1.7 -7.1 hypothetical protein compare
MMP_RS07385 -1.6 -2.9 protein translocase SEC61 complex subunit gamma compare
MMP_RS05095 -1.6 -8.2 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS03700 -1.6 -5.2 sodium:proton antiporter compare
MMP_RS06670 -1.6 -3.8 glucose-6-phosphate isomerase compare
MMP_RS06200 -1.6 -7.5 M24 family metallopeptidase compare
MMP_RS05055 -1.6 -11.0 DUF166 domain-containing protein compare
MMP_RS03110 -1.5 -4.8 glycosyltransferase family 2 protein compare
MMP_RS09055 -1.5 -1.3 CAP domain-containing protein compare
MMP_RS07605 -1.5 -2.8 diadenylate cyclase compare
MMP_RS07075 -1.5 -3.1 phosphomannomutase/phosphoglucomutase compare
MMP_RS04485 -1.5 -10.3 putative beta-lysine N-acetyltransferase compare
MMP_RS05100 -1.5 -11.4 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS05920 -1.5 -0.7 50S ribosomal protein L37e compare
MMP_RS07600 -1.4 -1.9 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS05250 -1.4 -4.2 NFYB/HAP3 family transcription factor subunit compare
MMP_RS05085 -1.4 -8.1 AAA family ATPase compare
MMP_RS08330 -1.4 -5.6 NADH-quinone oxidoreductase subunit H compare
MMP_RS06400 -1.4 -1.0 4Fe-4S binding protein compare
MMP_RS01720 -1.3 -1.2 replication factor C large subunit compare
MMP_RS05640 -1.3 -4.1 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS01575 -1.3 -4.7 aldolase compare
MMP_RS05075 -1.3 -9.4 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS07200 -1.3 -4.1 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS05090 -1.3 -7.8 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS03305 -1.3 -6.1 winged helix-turn-helix domain-containing protein compare
MMP_RS05425 -1.3 -4.8 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS07755 -1.3 -1.1 DUF555 domain-containing protein compare
MMP_RS06475 -1.3 -2.7 FAD-dependent oxidoreductase compare
MMP_RS05540 -1.2 -1.9 hypothetical protein compare
MMP_RS01755 -1.2 -1.2 DUF2097 domain-containing protein compare
MMP_RS01085 -1.2 -2.0 hypothetical protein compare
MMP_RS05080 -1.2 -7.5 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS03155 -1.2 -4.4 precorrin-6A reductase compare
MMP_RS06940 -1.2 -3.1 polyprenyl diphosphate synthase compare
MMP_RS07845 -1.2 -1.5 LL-diaminopimelate aminotransferase compare
MMP_RS03560 -1.2 -9.6 Na+/H+ antiporter NhaC family protein compare
MMP_RS08195 -1.2 -5.0 hypothetical protein compare
MMP_RS02175 -1.2 -0.9 DUF1611 domain-containing protein compare
MMP_RS08320 -1.2 -4.6 molybdopterin molybdotransferase MoeA compare
MMP_RS06170 -1.2 -5.0 ABC transporter ATP-binding protein compare
MMP_RS02110 -1.2 -2.1 hypothetical protein compare
MMP_RS07330 -1.1 -8.9 membrane protein compare
MMP_RS05815 -1.1 -1.9 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS04480 -1.1 -8.9 lysine 2 3-aminomutase compare
MMP_RS03765 -1.1 -4.7 CopG family ribbon-helix-helix protein compare
MMP_RS06705 -1.1 -4.3 formate/nitrite transporter family protein compare
MMP_RS00040 -1.1 -4.8 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS05555 -1.1 -1.4 DUF4040 domain-containing protein compare
MMP_RS08000 -1.1 -8.2 methyl coenzyme M reductase-arginine methyltransferase Mmp10 compare
MMP_RS06035 -1.1 -7.6 glycosyltransferase family 2 protein compare
MMP_RS01885 -1.1 -5.6 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS05060 -1.1 -5.8 AAA family ATPase compare
MMP_RS05635 -1.1 -5.9 NAD-dependent epimerase/dehydratase family protein compare
MMP_RS08570 -1.1 -6.4 coenzyme F420-0:L-glutamate ligase compare
MMP_RS05580 -1.1 -7.9 glycosyltransferase compare
MMP_RS05020 -1.0 -2.2 hypothetical protein compare
MMP_RS05070 -1.0 -4.0 4Fe-4S dicluster domain-containing protein compare
MMP_RS01430 -1.0 -5.6 mechanosensitive ion channel family protein compare
MMP_RS04990 -1.0 -4.4 aquaporin family protein compare
MMP_RS08225 -1.0 -6.1 RimK family alpha-L-glutamate ligase compare
MMP_RS06675 -1.0 -5.9 ADP-specific phosphofructokinase compare
MMP_RS00290 -1.0 -4.7 hypothetical protein compare
MMP_RS01790 -1.0 -3.1 restriction endonuclease compare
MMP_RS04955 -1.0 -2.6 DNA topoisomerase I compare
MMP_RS08840 -1.0 -5.4 class I SAM-dependent methyltransferase compare
MMP_RS08595 -1.0 -1.1 flagellar protein C compare
MMP_RS01750 -1.0 -5.1 DUF63 family protein compare
MMP_RS05295 -1.0 -5.3 minichromosome maintenance protein MCM compare
MMP_RS06865 -1.0 -1.0 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS07730 -0.9 -1.4 pyruvate synthase subunit beta compare
MMP_RS01600 -0.9 -1.6 50S ribosomal protein L15e compare
MMP_RS07960 -0.9 -3.9 sugar phosphate isomerase/epimerase compare
MMP_RS05925 -0.9 -1.9 small nuclear ribonucleoprotein compare
MMP_RS02780 -0.9 -4.9 hypothetical protein compare
MMP_RS04980 -0.9 -6.4 DUF2193 domain-containing protein compare
MMP_RS05545 -0.9 -3.5 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS07540 -0.9 -2.3 CBS domain-containing protein compare
MMP_RS04090 -0.9 -2.4 hypothetical protein compare
MMP_RS00810 -0.9 -3.7 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS03435 -0.9 -1.1 ketol-acid reductoisomerase compare
MMP_RS00895 -0.8 -2.8 hypothetical protein compare
MMP_RS01220 -0.8 -3.1 hypothetical protein compare
MMP_RS03390 -0.8 -3.5 malate dehydrogenase compare
MMP_RS08760 -0.8 -2.6 hypothetical protein compare
MMP_RS06290 -0.8 -2.4 DNA repair and recombination protein RadA compare
MMP_RS01880 -0.8 -3.9 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS03760 -0.8 -4.9 hypothetical protein compare
MMP_RS00720 -0.8 -4.3 metal-dependent hydrolase compare
MMP_RS06920 -0.8 -5.0 AAA family ATPase compare
MMP_RS08650 -0.8 -1.4 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS00695 -0.8 -0.6 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS06165 -0.8 -4.8 ABC transporter permease compare
MMP_RS07190 -0.8 -4.2 chromosome segregation protein SMC compare
MMP_RS02225 -0.8 -4.2 carbohydrate kinase family protein compare


Specific Phenotypes

For 3 genes in this experiment

For stress Sodium nitrite in Methanococcus maripaludis S2

For stress Sodium nitrite across organisms