Experiment set14S49 for Rhodanobacter denitrificans FW104-10B01

Compare to:

NLDM_defined low phosphorus; stationary

200 most important genes:

  gene name fitness t score description  
LRK54_RS07860 -2.5 -14.0 SIS domain-containing protein compare
LRK54_RS05200 -2.4 -4.2 hypothetical protein compare
LRK54_RS10355 -2.2 -3.0 threonine synthase compare
LRK54_RS16945 -2.2 -4.4 sigma-E factor negative regulatory protein compare
LRK54_RS11585 -2.0 -14.5 cAMP-activated global transcriptional regulator CRP compare
LRK54_RS04630 -1.9 -2.8 energy-dependent translational throttle protein EttA compare
LRK54_RS04720 -1.9 -7.5 phosphoribosylformylglycinamidine synthase compare
LRK54_RS01800 -1.9 -3.3 dCTP deaminase compare
LRK54_RS15105 -1.8 -6.1 polynucleotide adenylyltransferase PcnB compare
LRK54_RS02855 -1.7 -5.1 type I restriction-modification system subunit M compare
LRK54_RS04710 -1.7 -2.8 glycosyltransferase family 2 protein compare
LRK54_RS00085 -1.7 -1.1 tetratricopeptide repeat protein compare
LRK54_RS05415 -1.5 -6.9 TetR/AcrR family transcriptional regulator compare
LRK54_RS00440 -1.5 -6.5 high frequency lysogenization protein HflD compare
LRK54_RS05535 -1.5 -4.3 glycosyltransferase family 2 protein compare
LRK54_RS12875 -1.5 -7.6 RNA polymerase factor sigma-54 compare
LRK54_RS12860 -1.4 -3.6 RNase adapter RapZ compare
LRK54_RS04255 -1.4 -7.5 type IV pilus twitching motility protein PilT compare
LRK54_RS05740 -1.4 -4.8 phosphoglycerate kinase compare
LRK54_RS03290 -1.4 -1.6 RIP metalloprotease RseP compare
LRK54_RS10855 -1.4 -3.6 protein-export chaperone SecB compare
LRK54_RS16655 -1.3 -2.8 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
LRK54_RS09805 -1.3 -5.4 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK54_RS10330 -1.3 -2.2 3-isopropylmalate dehydratase small subunit compare
LRK54_RS16735 -1.3 -9.9 endopeptidase La compare
LRK54_RS05765 -1.3 -7.6 fructose-bisphosphate aldolase class I compare
LRK54_RS17905 -1.3 -2.7 NfuA family Fe-S biogenesis protein compare
LRK54_RS15025 -1.3 -5.0 phosphate regulon sensor histidine kinase PhoR compare
LRK54_RS12855 -1.3 -4.8 PTS fructose transporter subunit IIA compare
LRK54_RS12200 -1.3 -6.7 division/cell wall cluster transcriptional repressor MraZ compare
LRK54_RS13760 -1.2 -6.5 trypsin-like peptidase domain-containing protein compare
LRK54_RS15035 -1.2 -2.8 M48 family metalloprotease compare
LRK54_RS12460 -1.2 -1.4 hypothetical protein compare
LRK54_RS16755 -1.2 -3.0 SurA N-terminal domain-containing protein compare
LRK54_RS00670 -1.2 -3.4 OmpA family protein compare
LRK54_RS10310 -1.2 -7.3 biosynthetic-type acetolactate synthase large subunit compare
LRK54_RS12945 -1.2 -6.6 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK54_RS16155 -1.2 -1.5 folate-binding protein compare
LRK54_RS05655 -1.2 -1.3 ABC transporter permease compare
LRK54_RS14800 -1.2 -2.1 cytochrome c compare
LRK54_RS11290 -1.1 -1.6 dihydrolipoyllysine-residue acetyltransferase compare
LRK54_RS04995 -1.1 -4.4 LacI family DNA-binding transcriptional regulator compare
LRK54_RS12830 -1.1 -4.5 YeiH family protein compare
LRK54_RS03125 -1.1 -2.0 preprotein translocase subunit YajC compare
LRK54_RS00520 -1.1 -9.7 aminomethyl-transferring glycine dehydrogenase compare
LRK54_RS05505 -1.1 -5.8 glycine cleavage system protein GcvH compare
LRK54_RS17270 -1.1 -3.4 DNA translocase FtsK compare
LRK54_RS05785 -1.1 -4.2 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK54_RS05665 -1.1 -2.3 dTDP-glucose 4,6-dehydratase compare
LRK54_RS10305 -1.1 -2.2 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
LRK54_RS04820 -1.0 -1.5 GspH/FimT family pseudopilin compare
LRK54_RS05540 -1.0 -2.4 glycosyltransferase family 2 protein compare
LRK54_RS16615 -1.0 -1.8 phosphopyruvate hydratase compare
LRK54_RS05980 -1.0 -0.7 ATP-binding protein compare
LRK54_RS04615 -1.0 -3.4 transcriptional regulator NrdR compare
LRK54_RS15030 -1.0 -6.6 phosphate regulon transcriptional regulator PhoB compare
LRK54_RS16730 -1.0 -3.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
LRK54_RS12865 -1.0 -5.1 HPr(Ser) kinase/phosphatase compare
LRK54_RS16940 -1.0 -3.8 RNA polymerase sigma factor RpoE compare
LRK54_RS05650 -1.0 -2.5 ABC transporter ATP-binding protein compare
LRK54_RS06745 -1.0 -4.0 mitochondrial fission ELM1 family protein compare
LRK54_RS16720 -1.0 -4.7 trigger factor compare
LRK54_RS11975 -0.9 -4.4 SLC13 family permease compare
LRK54_RS05510 -0.9 -6.1 glycine cleavage system aminomethyltransferase GcvT compare
LRK54_RS06875 -0.9 -0.9 YiiD C-terminal domain-containing protein compare
LRK54_RS18050 -0.9 -6.8 lipopolysaccharide assembly protein LapB compare
LRK54_RS11175 -0.9 -4.2 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK54_RS13830 -0.9 -4.6 SDR family NAD(P)-dependent oxidoreductase compare
LRK54_RS05670 -0.9 -2.9 glucose-1-phosphate thymidylyltransferase RfbA compare
LRK54_RS10320 -0.9 -2.7 dihydroxy-acid dehydratase compare
LRK54_RS08760 -0.9 -2.5 transaldolase compare
LRK54_RS06785 -0.9 -1.1 protein-disulfide reductase DsbD compare
LRK54_RS01520 -0.9 -7.2 amino acid permease compare
LRK54_RS00320 -0.9 -1.5 phosphoglycerate mutase compare
LRK54_RS00635 -0.9 -1.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK54_RS10315 -0.9 -5.2 ketol-acid reductoisomerase compare
LRK54_RS09185 -0.8 -6.6 DUF4124 domain-containing protein compare
LRK54_RS18060 -0.8 -3.2 polysaccharide biosynthesis protein compare
LRK54_RS02180 -0.8 -4.4 UvrD-helicase domain-containing protein compare
LRK54_RS12625 -0.8 -5.8 bifunctional aspartate kinase/diaminopimelate decarboxylase compare
LRK54_RS08775 -0.8 -1.9 GNAT family N-acetyltransferase compare
LRK54_RS16930 -0.8 -5.8 hypothetical protein compare
LRK54_RS05500 -0.8 -1.2 hypothetical protein compare
LRK54_RS10350 -0.8 -4.0 hypothetical protein compare
LRK54_RS02895 -0.8 -5.8 rhomboid family intramembrane serine protease compare
LRK54_RS14590 -0.8 -4.1 N-acetylmuramoyl-L-alanine amidase compare
LRK54_RS04140 -0.8 -3.1 inositol-phosphate phosphatase compare
LRK54_RS10360 -0.8 -2.2 homoserine kinase compare
LRK54_RS16935 -0.8 -6.3 bifunctional diguanylate cyclase/phosphodiesterase compare
LRK54_RS06675 -0.7 -4.1 TetR/AcrR family transcriptional regulator compare
LRK54_RS10640 -0.7 -2.0 SCP2 sterol-binding domain-containing protein compare
LRK54_RS15015 -0.7 -3.0 Ppx/GppA family phosphatase compare
LRK54_RS03405 -0.7 -4.4 ribonuclease G compare
LRK54_RS11820 -0.7 -5.6 citrate synthase compare
LRK54_RS04100 -0.7 -1.3 ATP-binding cassette domain-containing protein compare
LRK54_RS11375 -0.7 -3.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK54_RS08750 -0.7 -2.2 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
LRK54_RS08335 -0.7 -2.7 MbcA/ParS/Xre antitoxin family protein compare
LRK54_RS02495 -0.7 -3.0 50S ribosomal protein L19 compare
LRK54_RS14275 -0.7 -1.8 twin-arginine translocase TatA/TatE family subunit compare
LRK54_RS02185 -0.7 -2.2 exodeoxyribonuclease V subunit alpha compare
LRK54_RS17505 -0.7 -2.0 preprotein translocase subunit SecG compare
LRK54_RS08540 -0.7 -3.5 DUF484 family protein compare
LRK54_RS13620 -0.7 -1.0 hypothetical protein compare
LRK54_RS10325 -0.7 -3.5 3-isopropylmalate dehydrogenase compare
LRK54_RS12985 -0.7 -2.8 inorganic phosphate transporter compare
LRK54_RS07215 -0.7 -3.1 cytochrome c4 compare
LRK54_RS04940 -0.7 -1.0 zinc ribbon domain-containing protein compare
LRK54_RS03710 -0.6 -3.6 tetratricopeptide repeat protein compare
LRK54_RS04365 -0.6 -1.1 H-NS histone family protein compare
LRK54_RS13910 -0.6 -2.7 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA compare
LRK54_RS17400 -0.6 -0.9 hypothetical protein compare
LRK54_RS05645 -0.6 -5.0 glycosyltransferase compare
LRK54_RS00615 -0.6 -3.4 protease modulator HflC compare
LRK54_RS07865 -0.6 -1.9 GntR family transcriptional regulator compare
LRK54_RS02440 -0.6 -1.2 RNA polymerase-binding protein DksA compare
LRK54_RS14230 -0.6 -2.4 GspH/FimT family pseudopilin compare
LRK54_RS00805 -0.6 -1.9 segregation/condensation protein A compare
LRK54_RS06885 -0.6 -3.5 rhodanese-like domain-containing protein compare
LRK54_RS02535 -0.6 -2.6 50S ribosomal protein L9 compare
LRK54_RS05110 -0.6 -0.7 glycosyltransferase family 4 protein compare
LRK54_RS12835 -0.6 -2.2 LysR family transcriptional regulator compare
LRK54_RS10075 -0.6 -1.8 tetratricopeptide repeat protein compare
LRK54_RS04350 -0.6 -2.7 phosphatidylcholine/phosphatidylserine synthase compare
LRK54_RS04260 -0.6 -2.9 pyrroline-5-carboxylate reductase compare
LRK54_RS00080 -0.6 -3.4 helix-turn-helix domain-containing protein compare
LRK54_RS04025 -0.6 -0.8 diacylglycerol kinase compare
LRK54_RS07775 -0.6 -1.9 MarR family transcriptional regulator compare
LRK54_RS05990 -0.6 -3.3 hypothetical protein compare
LRK54_RS17225 -0.6 -1.8 cytochrome-c oxidase, cbb3-type subunit II compare
LRK54_RS09250 -0.6 -5.1 rhomboid family intramembrane serine protease compare
LRK54_RS17855 -0.6 -1.8 (2Fe-2S)-binding protein compare
LRK54_RS12190 -0.6 -3.2 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
LRK54_RS09180 -0.6 -5.2 phosphomannomutase/phosphoglucomutase compare
LRK54_RS14490 -0.6 -1.6 ABC transporter ATP-binding protein compare
LRK54_RS00620 -0.6 -3.5 FtsH protease activity modulator HflK compare
LRK54_RS16670 -0.5 -4.1 Mth938-like domain-containing protein compare
LRK54_RS17160 -0.5 -1.2 Eco57I restriction-modification methylase domain-containing protein compare
LRK54_RS08385 -0.5 -2.0 GntR family transcriptional regulator compare
LRK54_RS10340 -0.5 -3.4 branched-chain amino acid transaminase compare
LRK54_RS12995 -0.5 -1.4 MGMT family protein compare
LRK54_RS02325 -0.5 -1.7 SDR family oxidoreductase compare
LRK54_RS00800 -0.5 -3.0 PilZ domain-containing protein compare
LRK54_RS09125 -0.5 -1.8 hypothetical protein compare
LRK54_RS15360 -0.5 -2.0 arginase family protein compare
LRK54_RS02460 -0.5 -3.5 phosphoglycolate phosphatase compare
LRK54_RS05985 -0.5 -0.4 response regulator transcription factor compare
LRK54_RS01685 -0.5 -3.9 tryptophan synthase subunit beta compare
LRK54_RS10335 -0.5 -3.1 3-isopropylmalate dehydratase large subunit compare
LRK54_RS10620 -0.5 -1.0 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
LRK54_RS00590 -0.5 -4.5 D-amino acid dehydrogenase compare
LRK54_RS13790 -0.5 -1.1 DUF3301 domain-containing protein compare
LRK54_RS00305 -0.5 -3.7 asparagine synthase B compare
LRK54_RS06425 -0.5 -0.8 ribonucleoside-diphosphate reductase compare
LRK54_RS17690 -0.5 -2.9 heavy metal response regulator transcription factor compare
LRK54_RS11170 -0.5 -2.1 NADP-dependent malic enzyme compare
LRK54_RS17210 -0.5 -1.7 hypothetical protein compare
LRK54_RS03110 -0.5 -3.2 nucleotidyltransferase family protein compare
LRK54_RS08395 -0.5 -2.2 hypothetical protein compare
LRK54_RS10760 -0.5 -2.1 DUF2249 domain-containing protein compare
LRK54_RS16255 -0.5 -1.3 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS07985 -0.5 -1.8 ATP-binding protein compare
LRK54_RS02815 -0.5 -0.8 hypothetical protein compare
LRK54_RS09825 -0.5 -3.2 alpha/beta hydrolase compare
LRK54_RS03365 -0.5 -1.9 polyprenyl synthetase family protein compare
LRK54_RS14175 -0.5 -1.8 hypothetical protein compare
LRK54_RS15925 -0.5 -1.0 carboxymuconolactone decarboxylase family protein compare
LRK54_RS06495 -0.5 -3.5 septal ring lytic transglycosylase RlpA family protein compare
LRK54_RS07125 -0.5 -3.9 cytochrome c oxidase subunit II compare
LRK54_RS06720 -0.5 -3.3 glycosyltransferase compare
LRK54_RS04585 -0.5 -2.3 muramoyltetrapeptide carboxypeptidase compare
LRK54_RS13885 -0.5 -1.0 DUF2249 domain-containing protein compare
LRK54_RS02695 -0.5 -1.3 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
LRK54_RS13010 -0.4 -2.9 LacI family DNA-binding transcriptional regulator compare
LRK54_RS17230 -0.4 -3.1 cytochrome-c oxidase, cbb3-type subunit I compare
LRK54_RS16650 -0.4 -2.3 5'/3'-nucleotidase SurE compare
LRK54_RS12415 -0.4 -2.1 hypothetical protein compare
LRK54_RS06020 -0.4 -2.0 GPW/gp25 family protein compare
LRK54_RS01680 -0.4 -2.1 tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data) compare
LRK54_RS09820 -0.4 -3.6 cell division protein ZapE compare
LRK54_RS12010 -0.4 -2.4 response regulator transcription factor compare
LRK54_RS12670 -0.4 -2.8 glycosyltransferase compare
LRK54_RS08860 -0.4 -2.1 hypothetical protein compare
LRK54_RS12590 -0.4 -3.3 molybdopterin-dependent oxidoreductase compare
LRK54_RS05550 -0.4 -0.9 FAD-binding protein compare
LRK54_RS07195 -0.4 -0.5 hypothetical protein compare
LRK54_RS11775 -0.4 -3.4 ABC transporter substrate-binding protein compare
LRK54_RS05775 -0.4 -2.8 pyruvate kinase compare
LRK54_RS00630 -0.4 -2.9 RNA chaperone Hfq compare
LRK54_RS04305 -0.4 -1.1 shikimate kinase compare
LRK54_RS06760 -0.4 -1.6 hypothetical protein compare
LRK54_RS06415 -0.4 -0.6 hypothetical protein compare
LRK54_RS14245 -0.4 -1.1 hypothetical protein compare
LRK54_RS07120 -0.4 -3.7 cytochrome c oxidase subunit I compare
LRK54_RS17060 -0.4 -1.3 RidA family protein compare
LRK54_RS02680 -0.4 -2.5 CPBP family intramembrane metalloprotease compare
LRK54_RS09360 -0.4 -1.2 RNA polymerase sigma factor compare
LRK54_RS13425 -0.4 -1.0 flagellar basal-body rod protein FlgF compare
LRK54_RS11670 -0.4 -2.4 5-formyltetrahydrofolate cyclo-ligase compare
LRK54_RS02090 -0.4 -3.4 NAD-glutamate dehydrogenase compare


Specific Phenotypes

None in this experiment

For Rhodanobacter denitrificans FW104-10B01 in nldm low p experiments