Experiment set14S219 for Enterobacter sp. TBS_079

Compare to:

TSB plate, 1:1 coculture with Enterobacter_ludwigii_PH2

Group: mixed community
Media: TSB + TSB plate, 1:1 coculture with Enterobacter_ludwigii_PH2
Culturing: Enterobacter_TBS_079_ML3a, agar plate, Aerobic, at 30 (C), (Solid)
By: Robin on 4/17/25
Media components: 17 g/L Tryptone, 3 g/L soytone, 2.5 g/L D-Glucose, 5 g/L Sodium Chloride, 2.5 g/L Potassium phosphate dibasic

Specific Phenotypes

For 9 genes in this experiment

For mixed community TSB plate, 1:1 coculture with Enterobacter_ludwigii_PH2 in Enterobacter sp. TBS_079

For mixed community TSB plate, 1:1 coculture with Enterobacter_ludwigii_PH2 across organisms

SEED Subsystems

Subsystem #Specific
Flagellum 2
Serine-glyoxylate cycle 2
Succinate dehydrogenase 2
TCA Cycle 2
Flagellum in Campylobacter 1
Glycerolipid and Glycerophospholipid Metabolism in Bacteria 1
Iron acquisition in Vibrio 1
Transport of Iron 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
demethylmenaquinol-6 biosynthesis I 1 1 1
demethylmenaquinol-8 biosynthesis I 1 1 1
demethylmenaquinol-4 biosynthesis 1 1 1
demethylmenaquinol-9 biosynthesis 1 1 1
NADH to fumarate electron transfer 2 2 1
menaquinol-7 biosynthesis 2 2 1
glycerol-3-phosphate to fumarate electron transfer 2 2 1
menaquinol-10 biosynthesis 2 2 1
menaquinol-12 biosynthesis 2 2 1
menaquinol-11 biosynthesis 2 2 1
succinate to cytochrome bd oxidase electron transfer 2 2 1
menaquinol-13 biosynthesis 2 2 1
succinate to cytochrome aa3 oxidase electron transfer 2 1 1
succinate to cytochrome bo oxidase electron transfer 2 1 1
hydrogen to fumarate electron transfer 2 1 1
aerobic respiration III (alternative oxidase pathway) 3 3 1
oleate biosynthesis III (cyanobacteria) 3 2 1
CDP-diacylglycerol biosynthesis II 4 4 1
CDP-diacylglycerol biosynthesis I 4 4 1
aerobic respiration I (cytochrome c) 4 2 1
aerobic respiration II (cytochrome c) (yeast) 4 2 1
phosphatidate biosynthesis (yeast) 5 3 1
phosphatidylglycerol biosynthesis II 6 6 1
phosphatidylglycerol biosynthesis I 6 6 1
superpathway of phospholipid biosynthesis III (E. coli) 12 11 2
superpathway of stearidonate biosynthesis (cyanobacteria) 6 2 1
palmitoyl ethanolamide biosynthesis 6 2 1
incomplete reductive TCA cycle 7 5 1
pyruvate fermentation to propanoate I 7 3 1
diacylglycerol and triacylglycerol biosynthesis 7 3 1
stigma estolide biosynthesis 7 2 1
anandamide biosynthesis II 8 2 1
superpathway of demethylmenaquinol-8 biosynthesis I 9 9 1
superpathway of demethylmenaquinol-6 biosynthesis I 9 8 1
superpathway of demethylmenaquinol-9 biosynthesis 9 8 1
TCA cycle VI (Helicobacter) 9 8 1
superpathway of menaquinol-8 biosynthesis I 10 10 1
superpathway of menaquinol-10 biosynthesis 10 9 1
superpathway of menaquinol-13 biosynthesis 10 9 1
superpathway of menaquinol-6 biosynthesis 10 9 1
superpathway of menaquinol-9 biosynthesis 10 9 1
superpathway of menaquinol-11 biosynthesis 10 9 1
superpathway of menaquinol-12 biosynthesis 10 9 1
superpathway of menaquinol-7 biosynthesis 10 9 1
TCA cycle III (animals) 10 8 1
reductive TCA cycle I 11 8 1
L-glutamate degradation VIII (to propanoate) 11 3 1
reductive TCA cycle II 12 8 1
anandamide biosynthesis I 12 4 1
superpathway of cardiolipin biosynthesis (bacteria) 13 10 1
(S)-lactate fermentation to propanoate, acetate and hydrogen 13 7 1
superpathway of phospholipid biosynthesis II (plants) 28 10 2
mixed acid fermentation 16 16 1
Methanobacterium thermoautotrophicum biosynthetic metabolism 56 22 1
superpathway of chorismate metabolism 59 54 1