Experiment set14S218 for Enterobacter sp. TBS_079

Compare to:

LB plate, 1:1 coculture with Enterobacter_ludwigii_PH2

200 most important genes:

  gene name fitness t score description  
MPMX20_03479 -5.1 -1.9 30S ribosomal protein S16 compare
MPMX20_01370 -4.6 -2.8 Peptidoglycan-associated lipoprotein compare
MPMX20_01073 -4.4 -1.9 Nucleoid-associated protein YbaB compare
MPMX20_02707 -4.4 -1.6 Septum site-determining protein MinC compare
MPMX20_01005 -4.2 -2.2 Transcriptional repressor NrdR compare
MPMX20_01368 -4.2 -2.8 hypothetical protein compare
MPMX20_04532 -4.1 -2.0 Met repressor compare
MPMX20_03756 -4.1 -2.8 FAD assembly factor SdhE compare
MPMX20_03386 -4.1 -0.9 putative protein YfgJ compare
MPMX20_01350 -4.0 -3.5 Succinate dehydrogenase cytochrome b556 subunit compare
MPMX20_01353 -3.9 -4.6 Succinate dehydrogenase iron-sulfur subunit compare
MPMX20_00764 -3.9 -1.5 hypothetical protein compare
MPMX20_01369 -3.8 -3.7 Tol-Pal system protein TolB compare
MPMX20_02344 -3.8 -1.4 hypothetical protein compare
MPMX20_03390 -3.8 -6.8 Outer membrane protein assembly factor BamB compare
MPMX20_01354 -3.7 -2.0 2-oxoglutarate dehydrogenase E1 component compare
MPMX20_00108 -3.7 -10.1 hypothetical protein compare
MPMX20_01704 -3.5 -3.4 hypothetical protein compare
MPMX20_01366 -3.5 -2.3 Tol-Pal system protein TolQ compare
MPMX20_03986 -3.5 -3.0 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
MPMX20_00105 -3.4 -8.0 N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase compare
MPMX20_01356 -3.4 -6.9 Succinate--CoA ligase [ADP-forming] subunit beta compare
MPMX20_03090 -3.4 -1.0 Methionine--tRNA ligase compare
MPMX20_01367 -3.3 -2.3 Tol-Pal system protein TolR compare
MPMX20_02102 -3.3 -1.4 hypothetical protein compare
MPMX20_04140 -3.3 -3.9 Malate dehydrogenase compare
MPMX20_02696 -3.3 -6.4 Murein tetrapeptide carboxypeptidase compare
MPMX20_04141 -3.2 -6.2 Arginine repressor compare
MPMX20_00419 -3.1 -8.7 Aspartate ammonia-lyase compare
MPMX20_04484 -3.1 -7.8 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
MPMX20_01349 -3.0 -5.4 Citrate synthase compare
MPMX20_04519 -3.0 -8.4 Hydrogen peroxide-inducible genes activator compare
MPMX20_04639 -2.9 -1.1 Phosphate-binding protein PstS compare
MPMX20_04194 -2.9 -1.3 Peptide deformylase compare
MPMX20_04306 -2.9 -4.6 Glycerol-3-phosphate regulon repressor compare
MPMX20_00722 -2.9 -7.4 Na(+)/H(+) antiporter NhaA compare
MPMX20_00258 -2.9 -4.0 Diacylglycerol kinase compare
MPMX20_01570 -2.8 -1.9 Integration host factor subunit beta compare
MPMX20_01357 -2.8 -4.2 Succinate--CoA ligase [ADP-forming] subunit alpha compare
MPMX20_04111 -2.8 -3.8 RNase adapter protein RapZ compare
MPMX20_01333 -2.8 -3.8 Negative modulator of initiation of replication compare
MPMX20_02732 -2.8 -1.6 PhoP/PhoQ regulator MgrB compare
MPMX20_00749 -2.8 -1.9 Chaperone SurA compare
MPMX20_01901 -2.8 -1.3 Integration host factor subunit alpha compare
MPMX20_02767 -2.8 -1.9 Holliday junction ATP-dependent DNA helicase RuvA compare
MPMX20_03767 -2.8 -3.8 Xaa-Pro aminopeptidase compare
MPMX20_04301 -2.8 -2.3 Fe/S biogenesis protein NfuA compare
MPMX20_00998 -2.7 -2.3 Sec translocon accessory complex subunit YajC compare
MPMX20_04443 -2.7 -1.5 Sec-independent protein translocase protein TatB compare
MPMX20_01550 -2.7 -2.2 Thioredoxin reductase compare
MPMX20_04133 -2.7 -4.0 Stringent starvation protein A compare
MPMX20_00110 -2.7 -4.6 hypothetical protein compare
MPMX20_01030 -2.7 -3.7 Lon protease compare
MPMX20_00109 -2.7 -7.0 hypothetical protein compare
MPMX20_03509 -2.7 -0.8 hypothetical protein compare
MPMX20_01775 -2.7 -5.4 3-oxoacyl-[acyl-carrier-protein] synthase 2 compare
MPMX20_03012 -2.7 -1.8 Glucose-1-phosphate thymidylyltransferase 1 compare
MPMX20_02672 -2.7 -15.3 hypothetical protein compare
MPMX20_01351 -2.6 -3.1 Succinate dehydrogenase hydrophobic membrane anchor subunit compare
MPMX20_02576 -2.6 -1.8 Protein TonB compare
MPMX20_00775 -2.6 -1.9 Ribosomal RNA small subunit methyltransferase H compare
MPMX20_04079 -2.6 -1.7 Protein-export membrane protein SecG compare
MPMX20_01118 -2.6 -0.8 hypothetical protein compare
MPMX20_04768 -2.5 -1.8 hypothetical protein compare
MPMX20_01352 -2.5 -7.1 Succinate dehydrogenase flavoprotein subunit compare
MPMX20_03742 -2.5 -7.4 HTH-type transcriptional regulator GalR compare
MPMX20_03020 -2.5 -5.1 hypothetical protein compare
MPMX20_00452 -2.5 -6.2 tRNA dimethylallyltransferase compare
MPMX20_00708 -2.5 -4.1 Aerobic respiration control protein ArcA compare
MPMX20_03408 -2.5 -1.4 Co-chaperone protein HscB compare
MPMX20_01334 -2.5 -7.3 Phosphoglucomutase compare
MPMX20_04104 -2.5 -3.1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC compare
MPMX20_04200 -2.5 -4.7 HTH-type transcriptional regulator ZntR compare
MPMX20_04375 -2.4 -1.7 putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
MPMX20_04489 -2.4 -6.3 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
MPMX20_03490 -2.4 -2.4 SsrA-binding protein compare
MPMX20_00241 -2.4 -7.3 Glucose-6-phosphate isomerase compare
MPMX20_03580 -2.4 -2.9 Protein RecA compare
MPMX20_00831 -2.4 -2.3 RNA polymerase-binding transcription factor DksA compare
MPMX20_04444 -2.4 -0.7 Sec-independent protein translocase protein TatA compare
MPMX20_04442 -2.4 -1.6 Sec-independent protein translocase protein TatC compare
MPMX20_04276 -2.4 -3.2 DNA adenine methylase compare
MPMX20_02476 -2.3 -1.5 Putrescine export system permease protein SapC compare
MPMX20_04374 -2.3 -1.8 putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
MPMX20_03440 -2.3 -2.7 Elongation factor 4 compare
MPMX20_01029 -2.3 -2.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
MPMX20_01811 -2.3 -7.7 Transcriptional regulatory protein PhoP compare
MPMX20_00747 -2.3 -1.6 Ribosomal RNA small subunit methyltransferase A compare
MPMX20_04399 -2.3 -6.7 Glutathione reductase compare
MPMX20_01969 -2.3 -1.6 Carbonic anhydrase 1 compare
MPMX20_00728 -2.2 -1.0 FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase compare
MPMX20_04028 -2.2 -1.2 hypothetical protein compare
MPMX20_03226 -2.2 -1.5 Acetate kinase compare
MPMX20_04162 -2.2 -3.4 3-dehydroquinate dehydratase compare
MPMX20_02657 -2.2 -14.3 hypothetical protein compare
MPMX20_04467 -2.2 -4.6 Diaminopimelate epimerase compare
MPMX20_00134 -2.2 -6.6 Mannitol-1-phosphate 5-dehydrogenase compare
MPMX20_04275 -2.2 -1.4 Ribulose-phosphate 3-epimerase compare
MPMX20_04242 -2.2 -2.1 hypothetical protein compare
MPMX20_04465 -2.2 -1.5 Tyrosine recombinase XerC compare
MPMX20_00745 -2.2 -2.9 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical compare
MPMX20_02591 -2.1 -2.5 DNA-binding protein H-NS compare
MPMX20_03095 -2.1 -1.4 hypothetical protein compare
MPMX20_04427 -2.1 -0.8 5S ribosomal RNA compare
MPMX20_03498 -2.1 -1.7 3-isopropylmalate dehydratase small subunit 1 compare
MPMX20_02757 -2.1 -2.4 Glucose-6-phosphate 1-dehydrogenase compare
MPMX20_03212 -2.1 -4.9 NADH-quinone oxidoreductase subunit H compare
MPMX20_03013 -2.1 -1.4 dTDP-glucose 4,6-dehydratase compare
MPMX20_00453 -2.1 -1.0 RNA-binding protein Hfq compare
MPMX20_04482 -2.1 -7.0 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase compare
MPMX20_01810 -2.0 -7.1 Virulence sensor histidine kinase PhoQ compare
MPMX20_04385 -2.0 -6.1 hypothetical protein compare
MPMX20_04137 -2.0 -3.2 Inner membrane protein YhcB compare
MPMX20_01734 -2.0 -5.4 Lipid A biosynthesis lauroyltransferase compare
MPMX20_03805 -2.0 -8.6 Glutathione synthetase compare
MPMX20_00107 -2.0 -5.6 Lipopolysaccharide core heptosyltransferase RfaQ compare
MPMX20_04339 -2.0 -5.8 Cell division protein FtsX compare
MPMX20_00087 -2.0 -1.9 DNA-directed RNA polymerase subunit omega compare
MPMX20_03154 -2.0 -5.0 Inner membrane protein YejM compare
MPMX20_03213 -2.0 -7.3 NADH-quinone oxidoreductase subunit G compare
MPMX20_02973 -2.0 -6.6 hypothetical protein compare
MPMX20_03407 -2.0 -1.4 Chaperone protein HscA compare
MPMX20_04272 -2.0 -0.8 hypothetical protein compare
MPMX20_04668 -2.0 -1.8 hypothetical protein compare
MPMX20_03260 -2.0 -2.2 hypothetical protein compare
MPMX20_04469 -2.0 -1.9 Adenylate cyclase compare
MPMX20_01020 -2.0 -0.8 Cytochrome bo(3) ubiquinol oxidase subunit 4 compare
MPMX20_02011 -1.9 -6.9 Ion-translocating oxidoreductase complex subunit A compare
MPMX20_02668 -1.9 -2.7 hypothetical protein compare
MPMX20_03377 -1.9 -2.4 hypothetical protein compare
MPMX20_03754 -1.9 -3.4 Flavodoxin 2 compare
MPMX20_02912 -1.9 -0.7 hypothetical protein compare
MPMX20_03932 -1.9 -2.2 hypothetical protein compare
MPMX20_04641 -1.9 -2.1 Phosphate transport system permease protein PstA compare
MPMX20_01768 -1.9 -1.2 Large ribosomal RNA subunit accumulation protein YceD compare
MPMX20_03227 -1.9 -2.6 Phosphate acetyltransferase compare
MPMX20_01065 -1.9 -5.6 Multidrug efflux pump subunit AcrA compare
MPMX20_01181 -1.9 -3.3 Putative transferase YhbX compare
MPMX20_03686 -1.9 -1.0 hypothetical protein compare
MPMX20_01762 -1.8 -5.1 Flagellar hook-associated protein 3 compare
MPMX20_00929 -1.8 -1.0 tRNA-Thr compare
MPMX20_00456 -1.8 -5.6 Modulator of FtsH protease HflC compare
MPMX20_03208 -1.8 -5.1 NADH-quinone oxidoreductase subunit L compare
MPMX20_03396 -1.8 -3.1 Nucleoside diphosphate kinase compare
MPMX20_00540 -1.8 -6.8 Magnesium-transporting ATPase, P-type 1 compare
MPMX20_03780 -1.8 -2.4 Transketolase 1 compare
MPMX20_02645 -1.8 -3.6 Ribosome-binding ATPase YchF compare
MPMX20_00773 -1.8 -7.1 Catabolite repressor/activator compare
MPMX20_02020 -1.8 -5.2 Mannose-6-phosphate isomerase compare
MPMX20_03753 -1.8 -3.7 Tyrosine recombinase XerD compare
MPMX20_03309 -1.7 -1.7 Phosphocarrier protein HPr compare
MPMX20_03463 -1.7 -4.6 Ribosomal large subunit pseudouridine synthase D compare
MPMX20_03443 -1.7 -3.5 Anti-sigma-E factor RseA compare
MPMX20_03211 -1.7 -3.0 NADH-quinone oxidoreductase subunit I compare
MPMX20_02475 -1.7 -2.6 Putrescine export system permease protein SapB compare
MPMX20_03014 -1.7 -8.0 6-phosphogluconate dehydrogenase, decarboxylating compare
MPMX20_00807 -1.7 -1.2 Pyruvate dehydrogenase E1 component compare
MPMX20_02021 -1.7 -5.2 Fumarate hydratase class I, aerobic compare
MPMX20_02766 -1.7 -1.6 Holliday junction ATP-dependent DNA helicase RuvB compare
MPMX20_02701 -1.7 -1.0 Fatty acid metabolism regulator protein compare
MPMX20_01974 -1.7 -1.1 Riboflavin synthase compare
MPMX20_02646 -1.7 -1.0 hypothetical protein compare
MPMX20_03017 -1.7 -5.1 hypothetical protein compare
MPMX20_04393 -1.7 -3.2 Low-affinity inorganic phosphate transporter 1 compare
MPMX20_03435 -1.7 -1.0 Pyridoxine 5'-phosphate synthase compare
MPMX20_00801 -1.7 -2.3 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
MPMX20_03075 -1.7 -3.0 HTH-type transcriptional repressor NagR compare
MPMX20_00106 -1.7 -1.1 Lipopolysaccharide core biosynthesis protein RfaG compare
MPMX20_00181 -1.7 -5.5 HTH-type transcriptional regulator KdgR compare
MPMX20_03209 -1.7 -1.5 NADH-quinone oxidoreductase subunit K compare
MPMX20_03019 -1.6 -2.7 hypothetical protein compare
MPMX20_00156 -1.6 -5.8 DNA-binding transcriptional repressor YiaJ compare
MPMX20_01983 -1.6 -3.9 Glutaredoxin 4 compare
MPMX20_02477 -1.6 -2.8 Peptide transport system ATP-binding protein SapD compare
MPMX20_03021 -1.6 -1.6 hypothetical protein compare
MPMX20_01607 -1.6 -2.6 Outer membrane protein A compare
MPMX20_00643 -1.6 -2.6 HTH-type transcriptional regulator FarR compare
MPMX20_04485 -1.6 -4.5 dTDP-fucosamine acetyltransferase compare
MPMX20_01295 -1.6 -2.0 Ribosomal RNA large subunit methyltransferase H compare
MPMX20_04115 -1.6 -4.9 Aerobic respiration control sensor protein ArcB compare
MPMX20_00720 -1.6 -0.8 Chaperone protein DnaK compare
MPMX20_04008 -1.6 -2.3 Inner membrane protein YqjE compare
MPMX20_00262 -1.6 -1.9 Zinc uptake regulation protein compare
MPMX20_03207 -1.6 -3.8 NADH-quinone oxidoreductase subunit M compare
MPMX20_03047 -1.6 -3.0 dCTP deaminase compare
MPMX20_00812 -1.6 -1.5 Aconitate hydratase B compare
MPMX20_04004 -1.6 -3.9 Inner membrane protein YqjA compare
MPMX20_04466 -1.6 -3.2 hypothetical protein compare
MPMX20_03135 -1.6 -2.2 hypothetical protein compare
MPMX20_03262 -1.6 -3.1 putative membrane transporter protein YfcA compare
MPMX20_03882 -1.6 -4.0 Outer membrane protein TolC compare
MPMX20_00213 -1.6 -1.7 Thiazole synthase compare
MPMX20_02341 -1.6 -2.5 hypothetical protein compare
MPMX20_02997 -1.5 -6.3 Exodeoxyribonuclease I compare
MPMX20_01031 -1.5 -0.9 DNA-binding protein HU-beta compare
MPMX20_02546 -1.5 -1.4 hypothetical protein compare
MPMX20_01394 -1.5 -4.8 6-phosphogluconolactonase compare
MPMX20_03015 -1.5 -9.9 Phosphoglucosamine mutase compare
MPMX20_01433 -1.5 -3.2 putative protein McbA compare
MPMX20_03850 -1.5 -2.3 Biopolymer transport protein ExbD compare


Specific Phenotypes

For 6 genes in this experiment

For mixed community LB plate, 1:1 coculture with Enterobacter_ludwigii_PH2 in Enterobacter sp. TBS_079

For mixed community LB plate, 1:1 coculture with Enterobacter_ludwigii_PH2 across organisms