Experiment set14S2 for Rhodanobacter denitrificans FW104-10B01

Compare to:

Time0_washed

200 most important genes:

  gene name fitness t score description  
LRK54_RS03675 -1.9 -1.3 redox-regulated ATPase YchF compare
LRK54_RS12875 -1.4 -6.8 RNA polymerase factor sigma-54 compare
LRK54_RS15200 -1.3 -2.9 AraC family transcriptional regulator compare
LRK54_RS17830 -1.2 -1.4 mercury resistance system periplasmic binding protein MerP compare
LRK54_RS12460 -1.2 -1.3 hypothetical protein compare
LRK54_RS02020 -1.1 -1.9 DUF2058 domain-containing protein compare
LRK54_RS00565 -1.0 -2.2 RNA polymerase sigma factor compare
LRK54_RS09185 -1.0 -7.8 DUF4124 domain-containing protein compare
LRK54_RS04710 -1.0 -2.1 glycosyltransferase family 2 protein compare
LRK54_RS02710 -0.9 -1.1 pentapeptide MXKDX repeat protein compare
LRK54_RS13425 -0.9 -2.7 flagellar basal-body rod protein FlgF compare
LRK54_RS04255 -0.9 -5.4 type IV pilus twitching motility protein PilT compare
LRK54_RS04590 -0.9 -1.9 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
LRK54_RS04305 -0.9 -1.9 shikimate kinase compare
LRK54_RS18060 -0.9 -2.5 polysaccharide biosynthesis protein compare
LRK54_RS13620 -0.8 -1.5 hypothetical protein compare
LRK54_RS11585 -0.8 -7.0 cAMP-activated global transcriptional regulator CRP compare
LRK54_RS03125 -0.8 -1.4 preprotein translocase subunit YajC compare
LRK54_RS04315 -0.8 -1.9 WGR domain-containing protein compare
LRK54_RS07980 -0.8 -1.8 nitrogen regulation protein NR(I) compare
LRK54_RS17760 -0.7 -1.2 cation transporter compare
LRK54_RS17220 -0.7 -1.9 cbb3-type cytochrome c oxidase subunit 3 compare
LRK54_RS17225 -0.7 -1.9 cytochrome-c oxidase, cbb3-type subunit II compare
LRK54_RS07290 -0.7 -1.0 VanZ family protein compare
LRK54_RS15325 -0.7 -0.7 hypothetical protein compare
LRK54_RS03920 -0.7 -1.3 hypothetical protein compare
LRK54_RS10065 -0.7 -1.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
LRK54_RS04630 -0.6 -1.2 energy-dependent translational throttle protein EttA compare
LRK54_RS06745 -0.6 -2.9 mitochondrial fission ELM1 family protein compare
LRK54_RS09180 -0.6 -5.9 phosphomannomutase/phosphoglucomutase compare
LRK54_RS13885 -0.6 -1.4 DUF2249 domain-containing protein compare
LRK54_RS12300 -0.6 -2.5 Co2+/Mg2+ efflux protein ApaG compare
LRK54_RS08750 -0.6 -1.9 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
LRK54_RS08250 -0.6 -2.9 YbhB/YbcL family Raf kinase inhibitor-like protein compare
LRK54_RS02395 -0.6 -1.9 acetylornithine deacetylase compare
LRK54_RS00670 -0.6 -2.3 OmpA family protein compare
LRK54_RS17905 -0.6 -1.5 NfuA family Fe-S biogenesis protein compare
LRK54_RS10925 -0.6 -1.2 cell division ATP-binding protein FtsE compare
LRK54_RS10540 -0.6 -2.2 BlaI/MecI/CopY family transcriptional regulator compare
LRK54_RS01800 -0.6 -1.4 dCTP deaminase compare
LRK54_RS15015 -0.6 -2.9 Ppx/GppA family phosphatase compare
LRK54_RS14670 -0.6 -1.1 NrsF family protein compare
LRK54_RS16730 -0.6 -1.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
LRK54_RS14150 -0.6 -1.3 ATP-binding protein compare
LRK54_RS17215 -0.6 -1.8 cytochrome-c oxidase, cbb3-type subunit III compare
LRK54_RS10485 -0.6 -2.4 type II toxin-antitoxin system RelE/ParE family toxin compare
LRK54_RS07215 -0.6 -2.7 cytochrome c4 compare
LRK54_RS12475 -0.6 -3.3 RDD family protein compare
LRK54_RS10355 -0.6 -1.3 threonine synthase compare
LRK54_RS10230 -0.6 -2.4 hypothetical protein compare
LRK54_RS00800 -0.6 -2.3 PilZ domain-containing protein compare
LRK54_RS05275 -0.6 -1.5 type II toxin-antitoxin system RelE/ParE family toxin compare
LRK54_RS11175 -0.6 -2.7 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK54_RS14000 -0.6 -2.0 nitrate reductase molybdenum cofactor assembly chaperone compare
LRK54_RS13155 -0.5 -2.9 DUF3473 domain-containing protein compare
LRK54_RS10855 -0.5 -1.6 protein-export chaperone SecB compare
LRK54_RS03730 -0.5 -1.7 acylphosphatase compare
LRK54_RS10740 -0.5 -1.1 Lrp/AsnC family transcriptional regulator compare
LRK54_RS16265 -0.5 -2.3 multidrug resistance efflux transporter family protein compare
LRK54_RS02495 -0.5 -2.3 50S ribosomal protein L19 compare
LRK54_RS05535 -0.5 -2.1 glycosyltransferase family 2 protein compare
LRK54_RS03710 -0.5 -2.8 tetratricopeptide repeat protein compare
LRK54_RS01910 -0.5 -1.7 hypothetical protein compare
LRK54_RS00555 -0.5 -2.4 hypothetical protein compare
LRK54_RS01020 -0.5 -3.2 pha synthase subunit protein compare
LRK54_RS13830 -0.5 -2.8 SDR family NAD(P)-dependent oxidoreductase compare
LRK54_RS03290 -0.5 -1.1 RIP metalloprotease RseP compare
LRK54_RS15550 -0.5 -1.5 alkyl hydroperoxide reductase compare
LRK54_RS02955 -0.5 -1.5 efflux transporter outer membrane subunit compare
LRK54_RS04555 -0.5 -2.4 NAD(P)-dependent alcohol dehydrogenase compare
LRK54_RS13355 -0.5 -2.4 YfhL family 4Fe-4S dicluster ferredoxin compare
LRK54_RS05500 -0.5 -1.1 hypothetical protein compare
LRK54_RS16755 -0.5 -1.6 SurA N-terminal domain-containing protein compare
LRK54_RS01595 -0.5 -2.3 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
LRK54_RS17060 -0.5 -1.0 RidA family protein compare
LRK54_RS09805 -0.5 -2.4 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK54_RS14095 -0.5 -2.8 cyclic nucleotide-binding domain-containing protein compare
LRK54_RS09345 -0.5 -0.9 ATP-binding protein compare
LRK54_RS12830 -0.4 -2.2 YeiH family protein compare
LRK54_RS16190 -0.4 -1.5 hypothetical protein compare
LRK54_RS13540 -0.4 -0.6 flagellar biosynthetic protein FliO compare
LRK54_RS18075 -0.4 -2.0 tRNA-binding protein compare
LRK54_RS14450 -0.4 -1.2 hypothetical protein compare
LRK54_RS12295 -0.4 -1.3 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
LRK54_RS12580 -0.4 -1.2 hypothetical protein compare
LRK54_RS16470 -0.4 -1.6 metalloregulator ArsR/SmtB family transcription factor compare
LRK54_RS04545 -0.4 -2.3 hemin uptake protein HemP compare
LRK54_RS05200 -0.4 -1.1 hypothetical protein compare
LRK54_RS13555 -0.4 -1.7 flagellar biosynthetic protein FliR compare
LRK54_RS07220 -0.4 -2.4 thiol:disulfide interchange protein DsbA/DsbL compare
LRK54_RS01285 -0.4 -1.7 3-deoxy-D-manno-octulosonic acid kinase compare
LRK54_RS05985 -0.4 -0.5 response regulator transcription factor compare
LRK54_RS08385 -0.4 -1.4 GntR family transcriptional regulator compare
LRK54_RS16935 -0.4 -3.3 bifunctional diguanylate cyclase/phosphodiesterase compare
LRK54_RS15570 -0.4 -2.3 MFS transporter compare
LRK54_RS15650 -0.4 -1.5 AzlC family ABC transporter permease compare
LRK54_RS00615 -0.4 -2.2 protease modulator HflC compare
LRK54_RS07950 -0.4 -2.2 GIY-YIG nuclease family protein compare
LRK54_RS15525 -0.4 -2.6 FAD-containing oxidoreductase compare
LRK54_RS04095 -0.4 -2.1 arylesterase compare
LRK54_RS04445 -0.4 -1.1 ABC transporter ATP-binding protein compare
LRK54_RS01775 -0.4 -1.9 DUF3025 domain-containing protein compare
LRK54_RS02870 -0.4 -1.9 DUF502 domain-containing protein compare
LRK54_RS04210 -0.4 -0.9 YqgE/AlgH family protein compare
LRK54_RS11925 -0.4 -1.6 fumarylacetoacetate hydrolase family protein compare
LRK54_RS09505 -0.4 -2.3 RNA polymerase sigma factor compare
LRK54_RS14785 -0.4 -1.6 NADH:flavin oxidoreductase/NADH oxidase compare
LRK54_RS02750 -0.4 -1.4 hypothetical protein compare
LRK54_RS08550 -0.4 -0.9 lipoprotein compare
LRK54_RS04615 -0.4 -1.5 transcriptional regulator NrdR compare
LRK54_RS14160 -0.4 -1.3 cytochrome c compare
LRK54_RS13105 -0.4 -1.3 FHA domain-containing protein compare
LRK54_RS09560 -0.4 -1.9 carboxymuconolactone decarboxylase family protein compare
LRK54_RS15175 -0.4 -1.9 DUF1289 domain-containing protein compare
LRK54_RS08025 -0.3 -0.8 NAD(P)-dependent oxidoreductase compare
LRK54_RS13660 -0.3 -2.3 protein-glutamate O-methyltransferase compare
LRK54_RS05540 -0.3 -1.1 glycosyltransferase family 2 protein compare
LRK54_RS04025 -0.3 -0.5 diacylglycerol kinase compare
LRK54_RS00750 -0.3 -0.7 response regulator transcription factor compare
LRK54_RS01720 -0.3 -0.4 hydroxyacid dehydrogenase compare
LRK54_RS17370 -0.3 -1.3 hypothetical protein compare
LRK54_RS01210 -0.3 -1.4 hypothetical protein compare
LRK54_RS11380 -0.3 -2.0 c-type cytochrome compare
LRK54_RS17025 -0.3 -0.4 cold-shock protein compare
LRK54_RS07385 -0.3 -1.7 isochorismatase family protein compare
LRK54_RS10145 -0.3 -2.0 DNA-processing protein DprA compare
LRK54_RS08045 -0.3 -1.8 DoxX family protein compare
LRK54_RS01280 -0.3 -0.6 MBL fold metallo-hydrolase compare
LRK54_RS06425 -0.3 -0.6 ribonucleoside-diphosphate reductase compare
LRK54_RS15860 -0.3 -2.0 hypothetical protein compare
LRK54_RS17865 -0.3 -1.6 Hg(II)-responsive transcriptional regulator compare
LRK54_RS06845 -0.3 -1.5 hypothetical protein compare
LRK54_RS06280 -0.3 -0.7 alpha/beta hydrolase compare
LRK54_RS16435 -0.3 -1.3 helix-turn-helix transcriptional regulator compare
LRK54_RS14465 -0.3 -1.3 septum site-determining protein MinC compare
LRK54_RS01660 -0.3 -1.5 DUF4399 domain-containing protein compare
LRK54_RS07900 -0.3 -1.7 GTP cyclohydrolase I compare
LRK54_RS12995 -0.3 -0.7 MGMT family protein compare
LRK54_RS15735 -0.3 -2.0 MarR family transcriptional regulator compare
LRK54_RS13740 -0.3 -2.0 ABC transporter permease compare
LRK54_RS05670 -0.3 -1.3 glucose-1-phosphate thymidylyltransferase RfbA compare
LRK54_RS14490 -0.3 -1.0 ABC transporter ATP-binding protein compare
LRK54_RS04340 -0.3 -1.8 ribosomal protein S18-alanine N-acetyltransferase compare
LRK54_RS12415 -0.3 -1.3 hypothetical protein compare
LRK54_RS13215 -0.3 -1.4 class I SAM-dependent methyltransferase compare
LRK54_RS02695 -0.3 -0.9 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
LRK54_RS10365 -0.3 -1.4 homoserine dehydrogenase compare
LRK54_RS16590 -0.3 -1.9 carboxymuconolactone decarboxylase family protein compare
LRK54_RS06875 -0.3 -0.4 YiiD C-terminal domain-containing protein compare
LRK54_RS03415 -0.3 -2.0 mismatch-specific DNA-glycosylase compare
LRK54_RS16020 -0.3 -1.9 Fic family protein compare
LRK54_RS11450 -0.3 -2.0 transcriptional repressor AgaR compare
LRK54_RS15385 -0.3 -2.0 phosphosulfolactate synthase compare
LRK54_RS05580 -0.3 -0.9 hypothetical protein compare
LRK54_RS01315 -0.3 -1.4 BON domain-containing protein compare
LRK54_RS01995 -0.3 -1.0 hypothetical protein compare
LRK54_RS05650 -0.3 -1.0 ABC transporter ATP-binding protein compare
LRK54_RS07845 -0.3 -2.5 tetratricopeptide repeat-containing sulfotransferase family protein compare
LRK54_RS01610 -0.3 -0.8 ATP phosphoribosyltransferase compare
LRK54_RS00305 -0.3 -2.1 asparagine synthase B compare
LRK54_RS05715 -0.3 -1.7 YdcH family protein compare
LRK54_RS02805 -0.3 -0.7 thioredoxin compare
LRK54_RS17195 -0.3 -2.5 acetyl-CoA hydrolase compare
LRK54_RS08215 -0.3 -1.5 cupin domain-containing protein compare
LRK54_RS09175 -0.3 -1.5 dUTP diphosphatase compare
LRK54_RS05550 -0.3 -0.7 FAD-binding protein compare
LRK54_RS16930 -0.3 -2.0 hypothetical protein compare
LRK54_RS01850 -0.3 -1.7 endonuclease III compare
LRK54_RS05315 -0.3 -1.3 cysteine synthase A compare
LRK54_RS01730 -0.3 -1.9 GNAT family N-acetyltransferase compare
LRK54_RS11860 -0.3 -1.7 MoxR family ATPase compare
LRK54_RS00175 -0.3 -0.6 transposase compare
LRK54_RS14245 -0.3 -0.5 hypothetical protein compare
LRK54_RS13320 -0.3 -1.6 oxidative damage protection protein compare
LRK54_RS10275 -0.3 -1.8 PadR family transcriptional regulator compare
LRK54_RS09770 -0.3 -1.9 glycosyltransferase family 2 protein compare
LRK54_RS10720 -0.3 -1.7 DUF2269 domain-containing protein compare
LRK54_RS15925 -0.3 -0.8 carboxymuconolactone decarboxylase family protein compare
LRK54_RS17595 -0.3 -1.2 TolC family protein compare
LRK54_RS13680 -0.3 -1.3 STAS domain-containing protein compare
LRK54_RS02180 -0.3 -1.5 UvrD-helicase domain-containing protein compare
LRK54_RS04670 -0.3 -1.6 YbdD/YjiX family protein compare
LRK54_RS16645 -0.3 -1.5 Smr/MutS family protein compare
LRK54_RS11580 -0.3 -1.7 sulfite exporter TauE/SafE family protein compare
LRK54_RS14395 -0.3 -1.6 MAPEG family protein compare
LRK54_RS00775 -0.3 -1.7 translational GTPase TypA compare
LRK54_RS07075 -0.3 -1.9 magnesium-translocating P-type ATPase compare
LRK54_RS16795 -0.3 -1.6 hypothetical protein compare
LRK54_RS17690 -0.3 -1.5 heavy metal response regulator transcription factor compare
LRK54_RS15635 -0.3 -1.3 DUF1656 domain-containing protein compare
LRK54_RS09735 -0.3 -1.1 hydroxymyristoyl-ACP dehydratase compare
LRK54_RS03970 -0.3 -1.4 NUDIX domain-containing protein compare
LRK54_RS07990 -0.3 -1.2 conjugal transfer protein TraR compare
LRK54_RS15690 -0.3 -1.4 DksA/TraR family C4-type zinc finger protein compare
LRK54_RS03070 -0.3 -1.7 2-dehydropantoate 2-reductase compare
LRK54_RS08800 -0.3 -1.2 DUF4259 domain-containing protein compare
LRK54_RS07175 -0.3 -1.4 hypothetical protein compare
LRK54_RS02700 -0.3 -1.1 ribosome silencing factor compare
LRK54_RS10055 -0.3 -1.8 ATP-dependent RNA helicase DbpA compare
LRK54_RS08555 -0.3 -1.4 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Rhodanobacter denitrificans FW104-10B01 in time0_washed experiments