Experiment set14S191 for Phocaeicola vulgatus CL09T03C04

Compare to:

Sodium pyrophosphate dibasic 1 mM phosphorus source

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS09445 -5.4 -2.6 tyrosine-type recombinase/integrase compare
HMPREF1058_RS11205 -4.5 -2.5 radical SAM protein compare
HMPREF1058_RS09675 -4.2 -4.4 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS17935 -4.0 -7.8 glycosyltransferase compare
HMPREF1058_RS08650 -4.0 -9.2 glutamate 5-kinase compare
HMPREF1058_RS03000 -3.9 -11.9 IMP dehydrogenase compare
HMPREF1058_RS06180 -3.9 -7.2 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS08850 -3.9 -10.4 N-acetyltransferase compare
HMPREF1058_RS04160 -3.9 -2.4 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS02220 -3.8 -7.2 branched-chain amino acid aminotransferase compare
HMPREF1058_RS17155 -3.7 -2.6 dCMP deaminase family protein compare
HMPREF1058_RS16760 -3.7 -3.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS07190 -3.7 -6.1 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS17940 -3.6 -6.0 alpha-amylase compare
HMPREF1058_RS12780 -3.6 -13.4 M20 family metallo-hydrolase compare
HMPREF1058_RS14795 -3.5 -6.9 prephenate dehydratase compare
HMPREF1058_RS12115 -3.5 -14.0 acetylglutamate kinase compare
HMPREF1058_RS12805 -3.5 -9.3 RNA polymerase sigma factor compare
HMPREF1058_RS09585 -3.5 -19.6 argininosuccinate lyase compare
HMPREF1058_RS08845 -3.4 -12.3 argininosuccinate synthase compare
HMPREF1058_RS14770 -3.4 -8.0 prephenate dehydrogenase compare
HMPREF1058_RS08645 -3.3 -13.4 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS13350 -3.3 -8.1 Trk system potassium transporter TrkA compare
HMPREF1058_RS06170 -3.3 -7.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1058_RS08830 -3.3 -8.7 pyrroline-5-carboxylate reductase compare
HMPREF1058_RS14785 -3.3 -6.2 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS11490 -3.3 -5.9 redox-regulated ATPase YchF compare
HMPREF1058_RS10255 -3.3 -3.9 hypothetical protein compare
HMPREF1058_RS00560 -3.3 -3.9 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS08535 -3.3 -3.0 elongation factor P compare
HMPREF1058_RS11270 -3.3 -14.5 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS12505 -3.3 -3.9 RNA polymerase factor sigma-54 compare
HMPREF1058_RS03510 -3.2 -4.9 YebC/PmpR family DNA-binding transcriptional regulator compare
HMPREF1058_RS07200 -3.2 -9.2 tryptophan synthase subunit alpha compare
HMPREF1058_RS13795 -3.2 -11.7 DUF4954 family protein compare
HMPREF1058_RS10820 -3.2 -14.8 4-phosphoerythronate dehydrogenase PdxB compare
HMPREF1058_RS14565 -3.2 -12.5 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS07170 -3.2 -8.8 tryptophan synthase subunit beta compare
HMPREF1058_RS14725 -3.1 -12.8 cofactor-independent phosphoglycerate mutase compare
HMPREF1058_RS07955 -3.1 -15.3 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS15880 -3.1 -12.4 histidinol-phosphate transaminase compare
HMPREF1058_RS10495 -3.1 -2.1 rhomboid family intramembrane serine protease compare
HMPREF1058_RS05780 -3.1 -10.0 PD40 domain-containing protein compare
HMPREF1058_RS12105 -3.1 -4.8 shikimate kinase compare
HMPREF1058_RS08840 -3.1 -9.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS15395 -3.1 -2.1 dihydroorotase compare
HMPREF1058_RS04045 -3.1 -3.7 tetratricopeptide repeat protein compare
HMPREF1058_RS17885 -3.1 -14.9 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
HMPREF1058_RS17130 -3.1 -2.1 tetratricopeptide repeat protein compare
HMPREF1058_RS16835 -3.0 -10.2 ketol-acid reductoisomerase compare
HMPREF1058_RS02170 -3.0 -8.9 hypothetical protein compare
HMPREF1058_RS00700 -3.0 -7.9 DUF4831 family protein compare
HMPREF1058_RS14790 -3.0 -11.7 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS15885 -3.0 -7.4 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1058_RS14550 -3.0 -13.1 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS15870 -3.0 -7.6 ATP phosphoribosyltransferase compare
HMPREF1058_RS10080 -3.0 -14.2 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS13970 -3.0 -2.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS08640 -3.0 -3.3 acetylornithine carbamoyltransferase compare
HMPREF1058_RS14720 -3.0 -13.3 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1058_RS16730 -2.9 -2.8 chorismate synthase compare
HMPREF1058_RS06195 -2.9 -9.9 diaminopimelate decarboxylase compare
HMPREF1058_RS09685 -2.9 -12.4 tetratricopeptide repeat protein compare
HMPREF1058_RS07625 -2.9 -2.0 hypothetical protein compare
HMPREF1058_RS18940 -2.9 -1.5 hypothetical protein compare
HMPREF1058_RS10075 -2.9 -10.9 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS10995 -2.9 -10.6 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS07960 -2.8 -16.8 response regulator compare
HMPREF1058_RS16855 -2.8 -1.1 LPS export ABC transporter periplasmic protein LptC compare
HMPREF1058_RS03910 -2.8 -6.0 alpha amylase C-terminal domain-containing protein compare
HMPREF1058_RS14610 -2.7 -12.5 adenylosuccinate synthase compare
HMPREF1058_RS01705 -2.7 -1.7 Na+/H+ antiporter NhaC family protein compare
HMPREF1058_RS15875 -2.7 -6.5 histidinol dehydrogenase compare
HMPREF1058_RS14730 -2.7 -8.7 threonine synthase compare
HMPREF1058_RS14505 -2.7 -1.8 mechanosensitive ion channel compare
HMPREF1058_RS06175 -2.6 -5.0 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS02990 -2.6 -4.7 peptidyl-prolyl cis-trans isomerase compare
HMPREF1058_RS11930 -2.6 -4.7 CPBP family intramembrane metalloprotease compare
HMPREF1058_RS14590 -2.6 -3.6 AraC family transcriptional regulator compare
HMPREF1058_RS07185 -2.6 -6.8 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS16820 -2.5 -10.1 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS00590 -2.5 -4.1 hypothetical protein compare
HMPREF1058_RS14555 -2.5 -2.8 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS14005 -2.5 -4.8 3-dehydroquinate synthase compare
HMPREF1058_RS07040 -2.5 -11.8 tetratricopeptide repeat protein compare
HMPREF1058_RS13910 -2.5 -3.8 nucleoside deaminase compare
HMPREF1058_RS11310 -2.5 -5.4 undecaprenyl-diphosphate phosphatase compare
HMPREF1058_RS16235 -2.5 -8.6 AMP-binding protein compare
HMPREF1058_RS17035 -2.4 -9.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1058_RS16240 -2.4 -5.2 o-succinylbenzoate synthase compare
HMPREF1058_RS04270 -2.4 -1.5 ferredoxin compare
HMPREF1058_RS08295 -2.4 -6.3 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS07195 -2.4 -3.5 phosphoribosylanthranilate isomerase compare
HMPREF1058_RS01745 -2.4 -5.5 PorT family protein compare
HMPREF1058_RS14545 -2.4 -7.7 2-isopropylmalate synthase compare
HMPREF1058_RS01925 -2.4 -3.4 helix-turn-helix domain-containing protein compare
HMPREF1058_RS11535 -2.4 -7.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HMPREF1058_RS04300 -2.3 -5.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS02755 -2.3 -2.8 translocation/assembly module TamB domain-containing protein compare
HMPREF1058_RS14130 -2.3 -6.8 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
HMPREF1058_RS16815 -2.3 -9.4 dihydroxy-acid dehydratase compare
HMPREF1058_RS02750 -2.3 -2.3 BamA/TamA family outer membrane protein compare
HMPREF1058_RS12735 -2.3 -8.1 HDIG domain-containing protein compare
HMPREF1058_RS08855 -2.3 -7.0 arginine repressor compare
HMPREF1058_RS04075 -2.3 -2.2 DUF58 domain-containing protein compare
HMPREF1058_RS03800 -2.3 -7.8 serine hydroxymethyltransferase compare
HMPREF1058_RS08025 -2.3 -5.8 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS12525 -2.3 -4.8 Na/Pi cotransporter family protein compare
HMPREF1058_RS12810 -2.3 -7.5 VanZ family protein compare
HMPREF1058_RS05140 -2.3 -5.7 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS08325 -2.3 -5.0 pyridoxine 5'-phosphate synthase compare
HMPREF1058_RS14490 -2.3 -11.2 S9 family peptidase compare
HMPREF1058_RS14920 -2.3 -9.4 serine dehydratase subunit alpha family protein compare
HMPREF1058_RS06410 -2.2 -2.6 elongation factor 4 compare
HMPREF1058_RS15075 -2.2 -10.0 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS05105 -2.2 -2.5 hypothetical protein compare
HMPREF1058_RS09990 -2.2 -8.4 5'-methylthioadenosine/adenosylhomocysteine nucleosidase compare
HMPREF1058_RS15565 -2.2 -12.1 hypothetical protein compare
HMPREF1058_RS21475 -2.2 -1.1 smalltalk protein compare
HMPREF1058_RS04080 -2.2 -3.0 AAA family ATPase compare
HMPREF1058_RS02115 -2.2 -7.6 NADP-specific glutamate dehydrogenase compare
HMPREF1058_RS03980 -2.2 -1.4 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
HMPREF1058_RS17565 -2.1 -1.8 tyrosine-type recombinase/integrase compare
HMPREF1058_RS07440 -2.1 -5.7 aspartate--ammonia ligase compare
HMPREF1058_RS18400 -2.1 -4.2 RidA family protein compare
HMPREF1058_RS04070 -2.1 -2.8 hypothetical protein compare
HMPREF1058_RS07175 -2.1 -6.1 anthranilate synthase component I family protein compare
HMPREF1058_RS12490 -2.0 -2.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS11890 -2.0 -4.1 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS16845 -2.0 -3.8 SurA N-terminal domain-containing protein compare
HMPREF1058_RS08835 -2.0 -7.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS14560 -2.0 -8.3 2-isopropylmalate synthase compare
HMPREF1058_RS11730 -2.0 -1.3 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS03970 -2.0 -2.2 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1058_RS06560 -2.0 -5.7 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1058_RS04295 -2.0 -4.1 3-phosphoglycerate dehydrogenase compare
HMPREF1058_RS16935 -1.9 -10.1 hypothetical protein compare
HMPREF1058_RS10825 -1.9 -6.2 glycosyltransferase family 9 protein compare
HMPREF1058_RS04050 -1.9 -3.9 protein BatD compare
HMPREF1058_RS09240 -1.9 -8.4 type I methionyl aminopeptidase compare
HMPREF1058_RS14605 -1.9 -4.2 transcriptional repressor compare
HMPREF1058_RS06335 -1.9 -6.7 RnfABCDGE type electron transport complex subunit D compare
HMPREF1058_RS20985 -1.9 -1.5 tyrosine-type recombinase/integrase compare
HMPREF1058_RS04550 -1.9 -1.0 hypothetical protein compare
HMPREF1058_RS03770 -1.8 -4.9 RNA polymerase sigma factor compare
HMPREF1058_RS01075 -1.8 -1.8 site-specific integrase compare
HMPREF1058_RS10270 -1.8 -2.9 hypothetical protein compare
HMPREF1058_RS14635 -1.8 -7.6 ABC-F family ATP-binding cassette domain-containing protein compare
HMPREF1058_RS18695 -1.8 -2.5 F0F1 ATP synthase subunit gamma compare
HMPREF1058_RS17045 -1.8 -1.9 hypothetical protein compare
HMPREF1058_RS06625 -1.8 -4.8 undecaprenyl-phosphate glucose phosphotransferase compare
HMPREF1058_RS14465 -1.8 -3.8 enoyl-ACP reductase compare
HMPREF1058_RS12800 -1.8 -10.5 TonB-dependent receptor compare
HMPREF1058_RS06640 -1.8 -5.7 chain-length determining protein compare
HMPREF1058_RS04370 -1.8 -4.5 agmatine deiminase family protein compare
HMPREF1058_RS16260 -1.8 -4.5 hotdog fold thioesterase compare
HMPREF1058_RS03130 -1.8 -2.7 DUF177 domain-containing protein compare
HMPREF1058_RS05615 -1.7 -0.7 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS11040 -1.7 -8.9 polysaccharide deacetylase family protein compare
HMPREF1058_RS10920 -1.7 -2.5 viroplasmin family protein compare
HMPREF1058_RS04190 -1.7 -3.1 HAD family hydrolase compare
HMPREF1058_RS17205 -1.7 -2.5 DUF4199 domain-containing protein compare
HMPREF1058_RS01620 -1.7 -1.2 tRNA-Lys compare
HMPREF1058_RS17175 -1.7 -4.5 MarC family protein compare
HMPREF1058_RS05915 -1.7 -2.7 sigma-70 family RNA polymerase sigma factor compare
HMPREF1058_RS18660 -1.7 -1.1 hypothetical protein compare
HMPREF1058_RS09690 -1.7 -10.5 DUF4369 domain-containing protein compare
HMPREF1058_RS04730 -1.6 -3.3 YbbR-like domain-containing protein compare
HMPREF1058_RS04250 -1.6 -4.8 sensor histidine kinase compare
HMPREF1058_RS12895 -1.6 -7.8 signal peptide peptidase SppA compare
HMPREF1058_RS06225 -1.6 -2.9 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1058_RS15580 -1.6 -4.7 Gfo/Idh/MocA family oxidoreductase compare
HMPREF1058_RS06320 -1.6 -4.3 electron transport complex subunit RsxA compare
HMPREF1058_RS06555 -1.6 -2.1 nucleotidyltransferase domain-containing protein compare
HMPREF1058_RS12675 -1.6 -1.9 DUF488 family protein compare
HMPREF1058_RS16245 -1.6 -3.3 1,4-dihydroxy-2-naphthoyl-CoA synthase compare
HMPREF1058_RS07965 -1.6 -4.8 chromate transporter compare
HMPREF1058_RS13905 -1.6 -3.5 hypothetical protein compare
HMPREF1058_RS00475 -1.6 -4.0 fumarylacetoacetate hydrolase family protein compare
HMPREF1058_RS11625 -1.6 -10.0 S41 family peptidase compare
HMPREF1058_RS17170 -1.5 -5.8 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS06310 -1.5 -4.5 UDP-glucose 4-epimerase GalE compare
HMPREF1058_RS17090 -1.5 -5.3 hypothetical protein compare
HMPREF1058_RS10940 -1.5 -8.5 U32 family peptidase compare
HMPREF1058_RS07060 -1.5 -4.6 DUF3869 domain-containing protein compare
HMPREF1058_RS07485 -1.5 -3.3 PqqD family protein compare
HMPREF1058_RS18575 -1.5 -3.8 YqgE/AlgH family protein compare
HMPREF1058_RS14225 -1.5 -5.0 polyprenyl synthetase family protein compare
HMPREF1058_RS06565 -1.5 -3.3 phosphate signaling complex protein PhoU compare
HMPREF1058_RS01685 -1.5 -2.7 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HMPREF1058_RS10290 -1.5 -2.1 hypothetical protein compare
HMPREF1058_RS02065 -1.5 -1.2 hypothetical protein compare
HMPREF1058_RS14930 -1.5 -8.0 AraC family transcriptional regulator compare
HMPREF1058_RS16750 -1.4 -1.8 shikimate dehydrogenase compare
HMPREF1058_RS06340 -1.4 -4.1 electron transport complex subunit RsxC compare
HMPREF1058_RS16805 -1.4 -3.6 FKBP-type peptidyl-prolyl cis-trans isomerase compare
HMPREF1058_RS04605 -1.4 -1.7 HNH endonuclease compare
HMPREF1058_RS10275 -1.4 -6.7 RNA-splicing ligase RtcB compare
HMPREF1058_RS05145 -1.4 -4.9 ATP-binding protein compare
HMPREF1058_RS07635 -1.4 -2.3 50S ribosomal protein L9 compare


Specific Phenotypes

For 8 genes in this experiment

For phosphorus source Sodium pyrophosphate dibasic in Phocaeicola vulgatus CL09T03C04

For phosphorus source Sodium pyrophosphate dibasic across organisms