Experiment set14S189 for Phocaeicola vulgatus CL09T03C04
Sodium phosphite dibasic pentahydrate 1 mM phosphorus source
Group: phosphorus sourceMedia: Varel_Bryant_medium_Glucose_minusP + Sodium phosphite dibasic pentahydrate (1 mM)
Culturing: Bvulgatus_CL09T03C04_ML5, 96 deep-well microplate; 1.2 mL volume, Anaerobic, at 37 (C), shaken=0 rpm
By: Surya on 7/3/25
Media components: 15 uM Hemin, 134 uM L-Methionine, 15 uM Iron (II) sulfate heptahydrate, 8.25 mM L-Cysteine, 23.8 mM Sodium bicarbonate, 20 mM D-Glucose, Mineral 3B solution minus phosphorus (6.6 mM Potassium Chloride, 15.4 mM Sodium Chloride, 98 uM Magnesium chloride hexahydrate, 176.5 uM Calcium chloride dihydrate, 4.2 uM Cobalt chloride hexahydrate, 50.5 uM Manganese (II) chloride tetrahydrate, 9.3 mM Ammonium chloride, 1.75 mM Sodium sulfate)
Specific Phenotypes
For 2 genes in this experiment
For phosphorus source Sodium phosphite dibasic pentahydrate in Phocaeicola vulgatus CL09T03C04
For phosphorus source Sodium phosphite dibasic pentahydrate across organisms
Metabolic Maps
Color code by fitness: see overview map or list of maps.
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| lipid IVA biosynthesis (H. pylori) | 6 | 6 | 1 |
| lipid IVA biosynthesis (E. coli) | 6 | 5 | 1 |
| lipid IVA biosynthesis (P. putida) | 6 | 5 | 1 |
| lipid IVA biosynthesis (Vibrio cholerae serogroup O1 El Tor) | 6 | 5 | 1 |
| lipid IVA biosynthesis (generic) | 6 | 5 | 1 |
| lipid IVA biosynthesis (2,3-diamino-2,3-dideoxy-D-glucopyranose-containing) | 6 | 4 | 1 |
| lipid IVA biosynthesis (P. gingivalis) | 9 | 9 | 1 |
| superpathway of (Kdo)2-lipid A biosynthesis | 17 | 13 | 1 |
| superpathway of Kdo2-lipid A biosynthesis | 25 | 13 | 1 |