Experiment set14S166 for Phocaeicola vulgatus CL09T03C04

Compare to:

Vitafiber 10 mg/mL carbon source

200 most detrimental genes:

  gene name fitness t score description  
HMPREF1058_RS14130 +4.1 18.6 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
HMPREF1058_RS14270 +3.8 22.9 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS12035 +3.6 12.1 phosphate butyryltransferase compare
HMPREF1058_RS09440 +3.5 21.6 ribosome-associated translation inhibitor RaiA compare
HMPREF1058_RS15330 +3.4 7.4 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS01665 +3.0 8.4 TraR/DksA C4-type zinc finger protein compare
HMPREF1058_RS03770 +3.0 14.2 RNA polymerase sigma factor compare
HMPREF1058_RS12805 +2.9 14.9 RNA polymerase sigma factor compare
HMPREF1058_RS14220 +2.7 6.4 energy transducer TonB compare
HMPREF1058_RS15320 +2.5 6.6 hypothetical protein compare
HMPREF1058_RS07960 +2.5 19.3 response regulator compare
HMPREF1058_RS16775 +2.4 12.8 tRNA pseudouridine(38-40) synthase TruA compare
HMPREF1058_RS05790 +2.3 1.8 hypothetical protein compare
HMPREF1058_RS14835 +2.3 7.3 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1058_RS08615 +2.2 19.5 RluA family pseudouridine synthase compare
HMPREF1058_RS18235 +2.2 8.8 3'-5' exonuclease compare
HMPREF1058_RS07675 +2.2 12.1 elongation factor G compare
HMPREF1058_RS03130 +2.0 5.7 DUF177 domain-containing protein compare
HMPREF1058_RS15310 +2.0 6.3 Mfa1 family fimbria major subunit compare
HMPREF1058_RS09990 +2.0 13.6 5'-methylthioadenosine/adenosylhomocysteine nucleosidase compare
HMPREF1058_RS10945 +2.0 14.2 tRNA dihydrouridine synthase DusB compare
HMPREF1058_RS15755 +1.9 11.4 HlyD family efflux transporter periplasmic adaptor subunit compare
HMPREF1058_RS15305 +1.9 6.8 hypothetical protein compare
HMPREF1058_RS12785 +1.9 13.0 long-chain fatty acid--CoA ligase compare
HMPREF1058_RS04445 +1.9 2.4 porin family protein compare
HMPREF1058_RS15315 +1.9 2.5 FimB/Mfa2 family fimbrial subunit compare
HMPREF1058_RS12810 +1.9 6.0 VanZ family protein compare
HMPREF1058_RS17805 +1.8 6.3 HAD family hydrolase compare
HMPREF1058_RS14915 +1.7 7.7 N-acetyltransferase compare
HMPREF1058_RS05615 +1.6 1.6 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS12885 +1.6 6.9 purine-nucleoside phosphorylase compare
HMPREF1058_RS18895 +1.5 2.6 hypothetical protein compare
HMPREF1058_RS20480 +1.5 5.3 site-specific integrase compare
HMPREF1058_RS15740 +1.4 5.2 hypothetical protein compare
HMPREF1058_RS17170 +1.3 8.4 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS18790 +1.3 4.0 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
HMPREF1058_RS02485 +1.3 5.6 electron transfer flavoprotein subunit alpha/FixB family protein compare
HMPREF1058_RS09445 +1.3 1.4 tyrosine-type recombinase/integrase compare
HMPREF1058_RS16770 +1.3 4.0 hypothetical protein compare
HMPREF1058_RS05520 +1.2 1.3 DUF4357 domain-containing protein compare
HMPREF1058_RS15045 +1.2 9.9 family 20 glycosylhydrolase compare
HMPREF1058_RS00245 +1.2 5.0 DUF5110 domain-containing protein compare
HMPREF1058_RS15795 +1.2 7.0 TolC family protein compare
HMPREF1058_RS03765 +1.2 6.2 trimeric intracellular cation channel family protein compare
HMPREF1058_RS01820 +1.2 1.5 hypothetical protein compare
HMPREF1058_RS13785 +1.1 8.8 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS03215 +1.1 6.4 AhpC/TSA family protein compare
HMPREF1058_RS10055 +1.1 9.0 translational GTPase TypA compare
HMPREF1058_RS02495 +1.1 7.1 acyl-CoA dehydrogenase family protein compare
HMPREF1058_RS07735 +1.1 4.6 chloride channel protein compare
HMPREF1058_RS15300 +1.1 2.2 DUF3575 domain-containing protein compare
HMPREF1058_RS04660 +1.0 8.5 response regulator compare
HMPREF1058_RS16805 +1.0 3.2 FKBP-type peptidyl-prolyl cis-trans isomerase compare
HMPREF1058_RS11065 +1.0 3.8 dihydrolipoyl dehydrogenase compare
HMPREF1058_RS18570 +1.0 3.4 GNAT family N-acetyltransferase compare
HMPREF1058_RS18565 +1.0 1.9 hypothetical protein compare
HMPREF1058_RS01645 +1.0 2.5 RNA methyltransferase compare
HMPREF1058_RS16245 +1.0 2.6 1,4-dihydroxy-2-naphthoyl-CoA synthase compare
HMPREF1058_RS15280 +1.0 1.5 tRNA-Ser compare
HMPREF1058_RS15060 +1.0 6.2 outer membrane beta-barrel protein compare
HMPREF1058_RS06345 +1.0 3.9 Fe-S cluster domain-containing protein compare
HMPREF1058_RS13780 +1.0 8.0 TonB-dependent receptor compare
HMPREF1058_RS01725 +1.0 4.7 peptide MFS transporter compare
HMPREF1058_RS02715 +1.0 6.1 DeoR/GlpR transcriptional regulator compare
HMPREF1058_RS09980 +1.0 1.1 PcfK-like family protein compare
HMPREF1058_RS03180 +0.9 5.1 V-type ATP synthase subunit A compare
HMPREF1058_RS18005 +0.9 3.1 anaerobic C4-dicarboxylate transporter compare
HMPREF1058_RS16235 +0.9 4.4 AMP-binding protein compare
HMPREF1058_RS15735 +0.9 1.1 hypothetical protein compare
HMPREF1058_RS08775 +0.9 2.3 DUF1893 domain-containing protein compare
HMPREF1058_RS01960 +0.9 2.3 hypothetical protein compare
HMPREF1058_RS03185 +0.9 5.0 V-type ATP synthase subunit B compare
HMPREF1058_RS04290 +0.9 4.2 DUF1015 domain-containing protein compare
HMPREF1058_RS17650 +0.9 4.7 response regulator transcription factor compare
HMPREF1058_RS04685 +0.9 3.8 glycine cleavage system aminomethyltransferase GcvT compare
HMPREF1058_RS07620 +0.9 6.3 long-chain fatty acid--CoA ligase compare
HMPREF1058_RS05940 +0.9 4.9 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
HMPREF1058_RS07010 +0.9 4.9 endolytic transglycosylase MltG compare
HMPREF1058_RS03890 +0.9 4.9 phosphatidylinositol-4-phosphate 5-kinase compare
HMPREF1058_RS02480 +0.9 3.8 electron transfer flavoprotein subunit beta/FixA family protein compare
HMPREF1058_RS04270 +0.9 1.1 ferredoxin compare
HMPREF1058_RS06325 +0.9 2.7 electron transport complex subunit E compare
HMPREF1058_RS04410 +0.8 1.1 porin family protein compare
HMPREF1058_RS18525 +0.8 0.8 hypothetical protein compare
HMPREF1058_RS13345 +0.8 6.3 TrkH family potassium uptake protein compare
HMPREF1058_RS10500 +0.8 2.1 HU family DNA-binding protein compare
HMPREF1058_RS05715 +0.8 3.4 hypothetical protein compare
HMPREF1058_RS14125 +0.8 5.5 magnesium transporter compare
HMPREF1058_RS14680 +0.8 4.8 homoserine O-succinyltransferase compare
HMPREF1058_RS21635 +0.8 1.2 transcriptional regulator compare
HMPREF1058_RS02540 +0.8 2.6 cyclodeaminase/cyclohydrolase family protein compare
HMPREF1058_RS12880 +0.8 4.3 thiamine-phosphate kinase compare
HMPREF1058_RS14950 +0.8 3.9 helix-turn-helix domain-containing protein compare
HMPREF1058_RS09590 +0.8 2.1 hypothetical protein compare
HMPREF1058_RS13965 +0.8 1.0 hypothetical protein compare
HMPREF1058_RS12535 +0.8 5.9 FKBP-type peptidyl-prolyl cis-trans isomerase compare
HMPREF1058_RS03485 +0.8 2.1 RloB domain-containing protein compare
HMPREF1058_RS02525 +0.8 2.3 glutamate formimidoyltransferase compare
HMPREF1058_RS04600 +0.8 1.5 hypothetical protein compare
HMPREF1058_RS08535 +0.8 1.2 elongation factor P compare
HMPREF1058_RS17285 +0.7 4.4 glycosyltransferase compare
HMPREF1058_RS00465 +0.7 3.1 translation initiation factor compare
HMPREF1058_RS12990 +0.7 1.2 hypothetical protein compare
HMPREF1058_RS02775 +0.7 5.2 response regulator compare
HMPREF1058_RS09370 +0.7 3.0 DUF3467 domain-containing protein compare
HMPREF1058_RS20540 +0.7 1.7 hypothetical protein compare
HMPREF1058_RS06340 +0.7 2.8 electron transport complex subunit RsxC compare
HMPREF1058_RS11315 +0.7 5.7 tRNA pseudouridine(55) synthase TruB compare
HMPREF1058_RS15525 +0.7 2.8 hypothetical protein compare
HMPREF1058_RS15325 +0.7 4.5 BACON domain-containing protein compare
HMPREF1058_RS01905 +0.7 1.8 hypothetical protein compare
HMPREF1058_RS06320 +0.7 3.6 electron transport complex subunit RsxA compare
HMPREF1058_RS06250 +0.7 4.7 AMP-binding protein compare
HMPREF1058_RS12495 +0.7 3.1 glycine cleavage system protein GcvH compare
HMPREF1058_RS01930 +0.7 2.2 type II toxin-antitoxin system HigB family toxin compare
HMPREF1058_RS17700 +0.7 1.4 chaperone modulator CbpM compare
HMPREF1058_RS21660 +0.7 1.1 hypothetical protein compare
HMPREF1058_RS16720 +0.7 2.8 nitroreductase family protein compare
HMPREF1058_RS18175 +0.7 1.8 relaxase/mobilization nuclease domain-containing protein compare
HMPREF1058_RS01605 +0.7 3.9 MBL fold metallo-hydrolase compare
HMPREF1058_RS03720 +0.7 4.4 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
HMPREF1058_RS02535 +0.7 3.1 imidazolonepropionase compare
HMPREF1058_RS11215 +0.7 1.2 DUF4294 domain-containing protein compare
HMPREF1058_RS03195 +0.7 3.1 V-type ATP synthase subunit I compare
HMPREF1058_RS07370 +0.7 4.3 N-acetylglucosamine-6-phosphate deacetylase compare
HMPREF1058_RS04215 +0.7 2.3 GNAT family N-acetyltransferase compare
HMPREF1058_RS12995 +0.7 1.3 hypothetical protein compare
HMPREF1058_RS06780 +0.7 2.4 glycosyltransferase family 2 protein compare
HMPREF1058_RS06705 +0.7 2.2 acyltransferase compare
HMPREF1058_RS0119260 +0.7 0.7 hypothetical protein compare
HMPREF1058_RS14995 +0.7 3.9 AhpC/TSA family protein compare
HMPREF1058_RS05765 +0.7 3.3 nucleoside phosphorylase compare
HMPREF1058_RS13425 +0.6 2.9 HU family DNA-binding protein compare
HMPREF1058_RS03135 +0.6 1.0 5S ribosomal RNA compare
HMPREF1058_RS04860 +0.6 2.8 hypothetical protein compare
HMPREF1058_RS02145 +0.6 2.3 hypothetical protein compare
HMPREF1058_RS14685 +0.6 4.5 U32 family peptidase compare
HMPREF1058_RS13745 +0.6 4.5 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS01240 +0.6 4.3 DEAD/DEAH box helicase compare
HMPREF1058_RS02140 +0.6 3.7 NADP-specific glutamate dehydrogenase compare
HMPREF1058_RS14085 +0.6 2.6 5'/3'-nucleotidase SurE compare
HMPREF1058_RS14000 +0.6 4.7 helix-turn-helix domain-containing protein compare
HMPREF1058_RS01845 +0.6 1.2 site-specific integrase compare
HMPREF1058_RS02710 +0.6 2.6 transketolase compare
HMPREF1058_RS13750 +0.6 5.0 TonB-dependent receptor compare
HMPREF1058_RS05340 +0.6 1.8 site-specific integrase compare
HMPREF1058_RS12800 +0.6 4.3 TonB-dependent receptor compare
HMPREF1058_RS10145 +0.6 2.0 hypothetical protein compare
HMPREF1058_RS20195 +0.6 1.5 hypothetical protein compare
HMPREF1058_RS01400 +0.6 1.4 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
HMPREF1058_RS15495 +0.6 4.1 sodium-translocating pyrophosphatase compare
HMPREF1058_RS12065 +0.6 1.0 DUF4491 family protein compare
HMPREF1058_RS04255 +0.6 2.0 MgtC/SapB family protein compare
HMPREF1058_RS16395 +0.6 2.2 TrkA family potassium uptake protein compare
HMPREF1058_RS03930 +0.6 1.8 ABC transporter permease compare
HMPREF1058_RS15985 +0.6 2.9 META domain-containing protein compare
HMPREF1058_RS06790 +0.6 3.1 glycosyltransferase family 2 protein compare
HMPREF1058_RS05820 +0.6 1.9 nicotinamide mononucleotide transporter compare
HMPREF1058_RS12290 +0.6 3.7 DUF3109 family protein compare
HMPREF1058_RS06805 +0.6 2.6 endonuclease/exonuclease/phosphatase family protein compare
HMPREF1058_RS03550 +0.6 1.7 AAA family ATPase compare
HMPREF1058_RS18795 +0.6 3.0 DUF3298 and DUF4163 domain-containing protein compare
HMPREF1058_RS02020 +0.6 0.8 hypothetical protein compare
HMPREF1058_RS16630 +0.6 1.6 DMP19 family protein compare
HMPREF1058_RS15550 +0.6 1.1 thioredoxin family protein compare
HMPREF1058_RS06330 +0.6 2.5 RnfABCDGE type electron transport complex subunit G compare
HMPREF1058_RS16955 +0.6 2.4 cold shock domain-containing protein compare
HMPREF1058_RS05410 +0.6 2.0 RNA polymerase sigma factor compare
HMPREF1058_RS14605 +0.6 1.3 transcriptional repressor compare
HMPREF1058_RS02975 +0.6 2.1 hypothetical protein compare
HMPREF1058_RS02875 +0.6 2.3 cysteine synthase A compare
HMPREF1058_RS13305 +0.6 1.6 NADH-quinone oxidoreductase subunit NuoK compare
HMPREF1058_RS18220 +0.6 2.4 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
HMPREF1058_RS0119380 +0.6 2.0 IS66 family insertion sequence element accessory protein TnpB compare
HMPREF1058_RS21625 +0.6 1.6 hypothetical protein compare
HMPREF1058_RS09700 +0.6 1.3 methionine--tRNA ligase compare
HMPREF1058_RS04680 +0.6 3.1 peptidase T compare
HMPREF1058_RS21450 +0.6 0.7 hypothetical protein compare
HMPREF1058_RS07965 +0.6 2.3 chromate transporter compare
HMPREF1058_RS02000 +0.6 1.7 type II toxin-antitoxin system HicA family toxin compare
HMPREF1058_RS06605 +0.5 1.9 thiol peroxidase compare
HMPREF1058_RS05420 +0.5 1.5 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
HMPREF1058_RS13000 +0.5 3.7 hypothetical protein compare
HMPREF1058_RS16015 +0.5 1.5 helix-turn-helix domain-containing protein compare
HMPREF1058_RS13950 +0.5 1.8 immunity 17 family protein compare
HMPREF1058_RS15375 +0.5 0.9 DUF4369 domain-containing protein compare
HMPREF1058_RS12705 +0.5 2.4 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
HMPREF1058_RS07210 +0.5 1.7 response regulator transcription factor compare
HMPREF1058_RS03090 +0.5 2.7 trigger factor compare
HMPREF1058_RS11300 +0.5 2.5 ABC transporter permease compare
HMPREF1058_RS08770 +0.5 3.1 cupin domain-containing protein compare
HMPREF1058_RS03200 +0.5 1.7 V-type ATP synthase subunit K compare
HMPREF1058_RS03780 +0.5 2.4 DUF1460 domain-containing protein compare
HMPREF1058_RS03760 +0.5 2.1 UDP-N-acetyl glucosamine 2-epimerase compare
HMPREF1058_RS05955 +0.5 2.6 hypothetical protein compare
HMPREF1058_RS12150 +0.5 0.9 PD-(D/E)XK nuclease family transposase compare
HMPREF1058_RS18660 +0.5 0.7 hypothetical protein compare
HMPREF1058_RS17800 +0.5 2.4 MATE family efflux transporter compare
HMPREF1058_RS11790 +0.5 2.3 TIGR00730 family Rossman fold protein compare
HMPREF1058_RS18700 +0.5 1.3 class I SAM-dependent methyltransferase compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in carbon source experiments

For carbon source Vitafiber across organisms