Experiment set14S141 for Phocaeicola vulgatus CL09T03C04

Compare to:

Lacto-N-tetraose 10 mg/mL carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS12490 -4.8 -3.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS14730 -4.4 -6.7 threonine synthase compare
HMPREF1058_RS14610 -3.9 -8.8 adenylosuccinate synthase compare
HMPREF1058_RS09675 -3.7 -3.6 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS15885 -3.7 -4.4 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1058_RS14725 -3.6 -7.0 cofactor-independent phosphoglycerate mutase compare
HMPREF1058_RS04520 -3.6 -1.4 hypothetical protein compare
HMPREF1058_RS08830 -3.5 -5.8 pyrroline-5-carboxylate reductase compare
HMPREF1058_RS09585 -3.4 -11.3 argininosuccinate lyase compare
HMPREF1058_RS07170 -3.3 -5.6 tryptophan synthase subunit beta compare
HMPREF1058_RS12115 -3.1 -5.6 acetylglutamate kinase compare
HMPREF1058_RS14795 -2.9 -4.0 prephenate dehydratase compare
HMPREF1058_RS01285 -2.9 -2.4 alpha-ribazole phosphatase compare
HMPREF1058_RS14720 -2.9 -9.3 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1058_RS15435 -2.9 -4.8 hypothetical protein compare
HMPREF1058_RS12780 -2.7 -7.1 M20 family metallo-hydrolase compare
HMPREF1058_RS08845 -2.7 -6.1 argininosuccinate synthase compare
HMPREF1058_RS06170 -2.7 -3.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1058_RS14565 -2.7 -7.8 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS15870 -2.6 -4.0 ATP phosphoribosyltransferase compare
HMPREF1058_RS18340 -2.6 -2.5 hypothetical protein compare
HMPREF1058_RS14550 -2.6 -7.1 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS07200 -2.6 -6.0 tryptophan synthase subunit alpha compare
HMPREF1058_RS16835 -2.6 -3.5 ketol-acid reductoisomerase compare
HMPREF1058_RS14545 -2.6 -6.9 2-isopropylmalate synthase compare
HMPREF1058_RS08850 -2.6 -6.4 N-acetyltransferase compare
HMPREF1058_RS03000 -2.5 -3.9 IMP dehydrogenase compare
HMPREF1058_RS15880 -2.5 -5.7 histidinol-phosphate transaminase compare
HMPREF1058_RS21520 -2.5 -1.0 hypothetical protein compare
HMPREF1058_RS08025 -2.5 -4.5 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS08650 -2.5 -4.7 glutamate 5-kinase compare
HMPREF1058_RS20355 -2.4 -1.7 hypothetical protein compare
HMPREF1058_RS14770 -2.4 -4.4 prephenate dehydrogenase compare
HMPREF1058_RS16820 -2.4 -4.7 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS14790 -2.4 -7.0 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS05650 -2.4 -1.7 hypothetical protein compare
HMPREF1058_RS00565 -2.4 -7.6 hemolysin III family protein compare
HMPREF1058_RS15875 -2.4 -4.8 histidinol dehydrogenase compare
HMPREF1058_RS08840 -2.4 -5.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS11270 -2.3 -8.5 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS16715 -2.3 -1.7 hypothetical protein compare
HMPREF1058_RS08645 -2.3 -6.9 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS14785 -2.3 -2.7 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS10335 -2.2 -2.5 hypothetical protein compare
HMPREF1058_RS16815 -2.2 -5.6 dihydroxy-acid dehydratase compare
HMPREF1058_RS08855 -2.2 -4.7 arginine repressor compare
HMPREF1058_RS07190 -2.1 -3.9 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS10995 -2.1 -3.3 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS07185 -2.1 -4.8 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS15660 -2.1 -7.7 galactokinase compare
HMPREF1058_RS21545 -2.1 -1.4 hypothetical protein compare
HMPREF1058_RS05015 -2.0 -2.3 twin-arginine translocase TatA/TatE family subunit compare
HMPREF1058_RS10080 -2.0 -7.5 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS02220 -2.0 -3.0 branched-chain amino acid aminotransferase compare
HMPREF1058_RS06180 -1.9 -2.7 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS04375 -1.9 -5.4 carbon-nitrogen hydrolase compare
HMPREF1058_RS01475 -1.9 -1.8 hypothetical protein compare
HMPREF1058_RS20485 -1.9 -1.3 mobilization protein compare
HMPREF1058_RS20985 -1.9 -1.3 tyrosine-type recombinase/integrase compare
HMPREF1058_RS07655 -1.9 -1.5 hypothetical protein compare
HMPREF1058_RS20295 -1.9 -1.2 hypothetical protein compare
HMPREF1058_RS16760 -1.9 -1.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS12105 -1.9 -2.5 shikimate kinase compare
HMPREF1058_RS15075 -1.8 -4.9 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS08640 -1.8 -1.7 acetylornithine carbamoyltransferase compare
HMPREF1058_RS21050 -1.8 -1.4 transposase compare
HMPREF1058_RS13085 -1.8 -2.1 HU family DNA-binding protein compare
HMPREF1058_RS05615 -1.8 -0.7 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS05725 -1.8 -1.8 hypothetical protein compare
HMPREF1058_RS07955 -1.8 -4.3 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS06455 -1.8 -2.4 DUF4248 domain-containing protein compare
HMPREF1058_RS18660 -1.8 -1.0 hypothetical protein compare
HMPREF1058_RS01925 -1.8 -2.4 helix-turn-helix domain-containing protein compare
HMPREF1058_RS02335 -1.8 -1.9 hypothetical protein compare
HMPREF1058_RS09445 -1.8 -1.1 tyrosine-type recombinase/integrase compare
HMPREF1058_RS15645 -1.7 -3.7 NUDIX hydrolase compare
HMPREF1058_RS17175 -1.7 -2.7 MarC family protein compare
HMPREF1058_RS10110 -1.7 -2.1 hypothetical protein compare
HMPREF1058_RS04445 -1.7 -0.8 porin family protein compare
HMPREF1058_RS01895 -1.7 -2.3 hypothetical protein compare
HMPREF1058_RS16260 -1.7 -3.6 hotdog fold thioesterase compare
HMPREF1058_RS10075 -1.7 -5.3 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS19090 -1.6 -0.6 tRNA-Phe compare
HMPREF1058_RS06175 -1.6 -1.6 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS06165 -1.6 -3.6 imidazole glycerol phosphate synthase subunit HisH compare
HMPREF1058_RS17815 -1.6 -2.4 MFS transporter compare
HMPREF1058_RS08635 -1.6 -2.5 rhodanese-like domain-containing protein compare
HMPREF1058_RS17885 -1.5 -6.0 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
HMPREF1058_RS16690 -1.5 -2.9 NTP transferase domain-containing protein compare
HMPREF1058_RS00505 -1.5 -1.8 hypothetical protein compare
HMPREF1058_RS15965 -1.5 -1.5 recombinase RecA compare
HMPREF1058_RS03290 -1.5 -1.8 thiamine phosphate synthase compare
HMPREF1058_RS08060 -1.5 -2.4 hypothetical protein compare
HMPREF1058_RS05300 -1.5 -1.0 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS13250 -1.5 -1.5 DUF3853 family protein compare
HMPREF1058_RS17205 -1.5 -1.0 DUF4199 domain-containing protein compare
HMPREF1058_RS0119845 -1.5 -2.0 hypothetical protein compare
HMPREF1058_RS04300 -1.5 -1.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS0119575 -1.4 -1.5 hypothetical protein compare
HMPREF1058_RS14560 -1.4 -4.5 2-isopropylmalate synthase compare
HMPREF1058_RS18565 -1.4 -1.1 hypothetical protein compare
HMPREF1058_RS07635 -1.4 -1.6 50S ribosomal protein L9 compare
HMPREF1058_RS18870 -1.4 -1.0 hypothetical protein compare
HMPREF1058_RS04515 -1.4 -1.1 hypothetical protein compare
HMPREF1058_RS04970 -1.4 -1.5 hypothetical protein compare
HMPREF1058_RS07175 -1.4 -4.3 anthranilate synthase component I family protein compare
HMPREF1058_RS19055 -1.4 -1.6 hypothetical protein compare
HMPREF1058_RS12595 -1.4 -0.8 hypothetical protein compare
HMPREF1058_RS12995 -1.4 -0.9 hypothetical protein compare
HMPREF1058_RS00560 -1.3 -0.9 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS14590 -1.3 -0.9 AraC family transcriptional regulator compare
HMPREF1058_RS19125 -1.3 -2.2 hypothetical protein compare
HMPREF1058_RS16825 -1.3 -4.8 acetolactate synthase small subunit compare
HMPREF1058_RS14400 -1.3 -2.3 nitroreductase family protein compare
HMPREF1058_RS13735 -1.3 -2.3 hypothetical protein compare
HMPREF1058_RS04940 -1.3 -0.9 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS21625 -1.3 -1.1 hypothetical protein compare
HMPREF1058_RS14075 -1.2 -1.1 ParB/RepB/Spo0J family partition protein compare
HMPREF1058_RS21085 -1.2 -2.1 transposase compare
HMPREF1058_RS07515 -1.2 -1.9 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS16280 -1.2 -1.1 MarR family transcriptional regulator compare
HMPREF1058_RS21575 -1.2 -1.2 mobilization protein compare
HMPREF1058_RS11295 -1.2 -4.1 methyltransferase domain-containing protein compare
HMPREF1058_RS18415 -1.2 -2.0 VOC family protein compare
HMPREF1058_RS12775 -1.2 -1.3 hypothetical protein compare
HMPREF1058_RS21430 -1.2 -2.6 6-phosphofructokinase compare
HMPREF1058_RS04035 -1.2 -1.4 hypothetical protein compare
HMPREF1058_RS05130 -1.1 -2.1 site-specific integrase compare
HMPREF1058_RS07180 -1.1 -1.7 aminodeoxychorismate/anthranilate synthase component II compare
HMPREF1058_RS09865 -1.1 -0.9 DUF3408 domain-containing protein compare
HMPREF1058_RS03135 -1.1 -0.8 5S ribosomal RNA compare
HMPREF1058_RS12690 -1.1 -1.5 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS06260 -1.1 -3.0 DUF3943 domain-containing protein compare
HMPREF1058_RS08835 -1.1 -3.5 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS21515 -1.1 -2.4 hypothetical protein compare
HMPREF1058_RS17600 -1.1 -2.6 hypothetical protein compare
HMPREF1058_RS17700 -1.1 -1.3 chaperone modulator CbpM compare
HMPREF1058_RS06380 -1.1 -2.9 copper homeostasis protein CutC compare
HMPREF1058_RS19025 -1.1 -0.8 hypothetical protein compare
HMPREF1058_RS15920 -1.1 -0.7 hypothetical protein compare
HMPREF1058_RS02800 -1.1 -2.4 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS16210 -1.1 -1.9 hypothetical protein compare
HMPREF1058_RS05360 -1.1 -0.8 helix-turn-helix domain-containing protein compare
HMPREF1058_RS07535 -1.1 -1.0 hypothetical protein compare
HMPREF1058_RS07800 -1.1 -2.2 hypothetical protein compare
HMPREF1058_RS05415 -1.1 -1.1 Hsp20/alpha crystallin family protein compare
HMPREF1058_RS09240 -1.1 -3.9 type I methionyl aminopeptidase compare
HMPREF1058_RS19160 -1.1 -1.9 hypothetical protein compare
HMPREF1058_RS11730 -1.1 -0.8 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS18400 -1.1 -3.2 RidA family protein compare
HMPREF1058_RS10375 -1.1 -2.2 hypothetical protein compare
HMPREF1058_RS03270 -1.0 -1.4 flavodoxin family protein compare
HMPREF1058_RS14660 -1.0 -3.5 TolC family protein compare
HMPREF1058_RS15760 -1.0 -2.3 ABC transporter ATP-binding protein compare
HMPREF1058_RS15260 -1.0 -2.9 ornithine--oxo-acid transaminase compare
HMPREF1058_RS10220 -1.0 -1.8 hypothetical protein compare
HMPREF1058_RS04295 -1.0 -1.0 3-phosphoglycerate dehydrogenase compare
HMPREF1058_RS03800 -1.0 -2.4 serine hydroxymethyltransferase compare
HMPREF1058_RS06195 -1.0 -2.9 diaminopimelate decarboxylase compare
HMPREF1058_RS14025 -1.0 -2.6 RsmD family RNA methyltransferase compare
HMPREF1058_RS02115 -1.0 -3.6 NADP-specific glutamate dehydrogenase compare
HMPREF1058_RS18265 -1.0 -1.2 aspartate 1-decarboxylase compare
HMPREF1058_RS03925 -1.0 -1.9 ATP-binding cassette domain-containing protein compare
HMPREF1058_RS13675 -1.0 -2.2 hypothetical protein compare
HMPREF1058_RS00105 -1.0 -3.1 rhamnogalacturonan acetylesterase compare
HMPREF1058_RS16060 -1.0 -1.4 5S ribosomal RNA compare
HMPREF1058_RS17580 -1.0 -3.1 dihydrofolate reductase compare
HMPREF1058_RS0119495 -0.9 -2.3 family 43 glycosylhydrolase compare
HMPREF1058_RS04455 -0.9 -2.2 MIP family channel protein compare
HMPREF1058_RS03450 -0.9 -0.9 hypothetical protein compare
HMPREF1058_RS18485 -0.9 -2.6 UDP-glucose/GDP-mannose dehydrogenase family protein compare
HMPREF1058_RS01430 -0.9 -0.9 anaerobic ribonucleoside-triphosphate reductase activating protein compare
HMPREF1058_RS04125 -0.9 -2.3 type I methionyl aminopeptidase compare
HMPREF1058_RS16435 -0.9 -2.5 RNA polymerase sigma-70 factor compare
HMPREF1058_RS05075 -0.9 -1.3 hypothetical protein compare
HMPREF1058_RS11290 -0.9 -2.7 PspC domain-containing protein compare
HMPREF1058_RS16920 -0.9 -2.5 nucleoside triphosphate pyrophosphohydrolase compare
HMPREF1058_RS13335 -0.9 -3.1 NADH-quinone oxidoreductase subunit A compare
HMPREF1058_RS13245 -0.9 -2.4 hypothetical protein compare
HMPREF1058_RS17850 -0.9 -1.8 ferritin compare
HMPREF1058_RS0119685 -0.9 -0.7 DUF4133 domain-containing protein compare
HMPREF1058_RS0119755 -0.9 -1.2 hypothetical protein compare
HMPREF1058_RS04870 -0.9 -2.4 RhsIA family immunity protein compare
HMPREF1058_RS16575 -0.9 -0.9 hypothetical protein compare
HMPREF1058_RS19120 -0.9 -0.7 hypothetical protein compare
HMPREF1058_RS01875 -0.9 -1.2 hypothetical protein compare
HMPREF1058_RS11940 -0.9 -0.9 DUF3836 domain-containing protein compare
HMPREF1058_RS06425 -0.9 -1.2 winged helix-turn-helix domain-containing protein compare
HMPREF1058_RS0119935 -0.9 -1.8 Rpn family recombination-promoting nuclease/putative transposase compare
HMPREF1058_RS09825 -0.9 -2.4 RteC domain-containing protein compare
HMPREF1058_RS03690 -0.9 -1.1 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS16270 -0.9 -3.0 MATE family efflux transporter compare
HMPREF1058_RS11915 -0.9 -0.6 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS01535 -0.9 -1.1 flavin reductase family protein compare
HMPREF1058_RS03845 -0.9 -1.8 ABC transporter permease compare
HMPREF1058_RS16520 -0.9 -1.3 nitroreductase family protein compare
HMPREF1058_RS07550 -0.9 -1.8 alpha/beta hydrolase compare
HMPREF1058_RS01980 -0.9 -2.5 hypothetical protein compare
HMPREF1058_RS06140 -0.9 -2.1 phage integrase SAM-like domain-containing protein compare
HMPREF1058_RS10500 -0.9 -1.5 HU family DNA-binding protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in carbon source experiments

For carbon source Lacto-N-tetraose across organisms