Experiment set14S12 for Rhodanobacter denitrificans FW104-10B01

Compare to:

NLDM_defined low iron; midlog

200 most important genes:

  gene name fitness t score description  
LRK54_RS06415 -2.7 -2.7 hypothetical protein compare
LRK54_RS07860 -2.4 -14.1 SIS domain-containing protein compare
LRK54_RS06720 -2.2 -12.6 glycosyltransferase compare
LRK54_RS10355 -2.0 -3.0 threonine synthase compare
LRK54_RS00490 -2.0 -1.5 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
LRK54_RS04710 -1.9 -2.2 glycosyltransferase family 2 protein compare
LRK54_RS03290 -1.6 -1.1 RIP metalloprotease RseP compare
LRK54_RS05200 -1.6 -2.9 hypothetical protein compare
LRK54_RS05740 -1.6 -5.2 phosphoglycerate kinase compare
LRK54_RS02855 -1.5 -4.1 type I restriction-modification system subunit M compare
LRK54_RS09805 -1.5 -6.3 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK54_RS00085 -1.5 -1.0 tetratricopeptide repeat protein compare
LRK54_RS05535 -1.5 -4.4 glycosyltransferase family 2 protein compare
LRK54_RS12945 -1.4 -7.5 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK54_RS18055 -1.4 -2.8 glycosyltransferase family 4 protein compare
LRK54_RS05785 -1.4 -4.6 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK54_RS12460 -1.4 -1.3 hypothetical protein compare
LRK54_RS05540 -1.4 -3.0 glycosyltransferase family 2 protein compare
LRK54_RS16615 -1.3 -1.9 phosphopyruvate hydratase compare
LRK54_RS16940 -1.3 -3.9 RNA polymerase sigma factor RpoE compare
LRK54_RS02180 -1.3 -5.9 UvrD-helicase domain-containing protein compare
LRK54_RS00635 -1.3 -1.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK54_RS07215 -1.3 -5.4 cytochrome c4 compare
LRK54_RS05415 -1.3 -6.4 TetR/AcrR family transcriptional regulator compare
LRK54_RS02955 -1.3 -3.1 efflux transporter outer membrane subunit compare
LRK54_RS06785 -1.3 -1.2 protein-disulfide reductase DsbD compare
LRK54_RS04100 -1.3 -1.8 ATP-binding cassette domain-containing protein compare
LRK54_RS03125 -1.2 -1.8 preprotein translocase subunit YajC compare
LRK54_RS12200 -1.2 -6.2 division/cell wall cluster transcriptional repressor MraZ compare
LRK54_RS10310 -1.2 -7.2 biosynthetic-type acetolactate synthase large subunit compare
LRK54_RS07290 -1.2 -1.7 VanZ family protein compare
LRK54_RS16755 -1.2 -2.7 SurA N-terminal domain-containing protein compare
LRK54_RS01800 -1.2 -2.4 dCTP deaminase compare
LRK54_RS16730 -1.2 -2.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
LRK54_RS11290 -1.1 -1.6 dihydrolipoyllysine-residue acetyltransferase compare
LRK54_RS18060 -1.1 -3.4 polysaccharide biosynthesis protein compare
LRK54_RS00670 -1.1 -2.8 OmpA family protein compare
LRK54_RS15105 -1.1 -4.5 polynucleotide adenylyltransferase PcnB compare
LRK54_RS03710 -1.1 -5.1 tetratricopeptide repeat protein compare
LRK54_RS12855 -1.1 -3.6 PTS fructose transporter subunit IIA compare
LRK54_RS15485 -1.1 -2.0 hypothetical protein compare
LRK54_RS17905 -1.1 -2.4 NfuA family Fe-S biogenesis protein compare
LRK54_RS03675 -1.1 -1.3 redox-regulated ATPase YchF compare
LRK54_RS16655 -1.0 -2.7 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
LRK54_RS05670 -1.0 -3.1 glucose-1-phosphate thymidylyltransferase RfbA compare
LRK54_RS05655 -1.0 -1.4 ABC transporter permease compare
LRK54_RS11175 -1.0 -4.4 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK54_RS13800 -1.0 -8.0 DUF1631 domain-containing protein compare
LRK54_RS05650 -1.0 -2.3 ABC transporter ATP-binding protein compare
LRK54_RS05640 -1.0 -5.6 GDP-mannose 4,6-dehydratase compare
LRK54_RS10315 -1.0 -6.9 ketol-acid reductoisomerase compare
LRK54_RS05980 -1.0 -0.7 ATP-binding protein compare
LRK54_RS02535 -1.0 -3.9 50S ribosomal protein L9 compare
LRK54_RS12875 -1.0 -5.6 RNA polymerase factor sigma-54 compare
LRK54_RS05550 -1.0 -2.0 FAD-binding protein compare
LRK54_RS10320 -1.0 -4.2 dihydroxy-acid dehydratase compare
LRK54_RS06745 -1.0 -3.8 mitochondrial fission ELM1 family protein compare
LRK54_RS12850 -1.0 -3.5 HPr family phosphocarrier protein compare
LRK54_RS05665 -1.0 -2.3 dTDP-glucose 4,6-dehydratase compare
LRK54_RS09185 -0.9 -7.1 DUF4124 domain-containing protein compare
LRK54_RS04255 -0.9 -5.3 type IV pilus twitching motility protein PilT compare
LRK54_RS12860 -0.9 -2.8 RNase adapter RapZ compare
LRK54_RS02495 -0.9 -3.4 50S ribosomal protein L19 compare
LRK54_RS07570 -0.9 -2.0 monovalent cation/H(+) antiporter subunit G compare
LRK54_RS05510 -0.9 -6.0 glycine cleavage system aminomethyltransferase GcvT compare
LRK54_RS08775 -0.9 -1.7 GNAT family N-acetyltransferase compare
LRK54_RS12295 -0.9 -2.3 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
LRK54_RS15035 -0.9 -3.1 M48 family metalloprotease compare
LRK54_RS17135 -0.9 -0.9 hypothetical protein compare
LRK54_RS10540 -0.9 -3.2 BlaI/MecI/CopY family transcriptional regulator compare
LRK54_RS07980 -0.9 -1.9 nitrogen regulation protein NR(I) compare
LRK54_RS00520 -0.8 -7.3 aminomethyl-transferring glycine dehydrogenase compare
LRK54_RS16155 -0.8 -1.0 folate-binding protein compare
LRK54_RS17370 -0.8 -1.9 hypothetical protein compare
LRK54_RS14580 -0.8 -0.8 hypothetical protein compare
LRK54_RS11820 -0.8 -6.5 citrate synthase compare
LRK54_RS11375 -0.8 -3.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK54_RS12830 -0.8 -3.4 YeiH family protein compare
LRK54_RS05765 -0.8 -5.3 fructose-bisphosphate aldolase class I compare
LRK54_RS00615 -0.8 -4.5 protease modulator HflC compare
LRK54_RS17225 -0.8 -2.2 cytochrome-c oxidase, cbb3-type subunit II compare
LRK54_RS06675 -0.8 -4.4 TetR/AcrR family transcriptional regulator compare
LRK54_RS09365 -0.8 -5.3 FecR family protein compare
LRK54_RS06895 -0.8 -0.7 hotdog fold thioesterase compare
LRK54_RS16350 -0.8 -2.0 helix-turn-helix domain-containing protein compare
LRK54_RS17205 -0.8 -3.1 heavy metal translocating P-type ATPase compare
LRK54_RS18050 -0.8 -5.6 lipopolysaccharide assembly protein LapB compare
LRK54_RS16050 -0.8 -0.6 tetratricopeptide repeat protein compare
LRK54_RS09395 -0.8 -3.9 FecR domain-containing protein compare
LRK54_RS09155 -0.7 -2.6 SPOR domain-containing protein compare
LRK54_RS10855 -0.7 -2.2 protein-export chaperone SecB compare
LRK54_RS08750 -0.7 -2.4 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
LRK54_RS05645 -0.7 -5.8 glycosyltransferase compare
LRK54_RS09725 -0.7 -1.5 phosphopantetheine-binding protein compare
LRK54_RS10325 -0.7 -3.9 3-isopropylmalate dehydrogenase compare
LRK54_RS11450 -0.7 -4.4 transcriptional repressor AgaR compare
LRK54_RS03700 -0.7 -1.9 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase compare
LRK54_RS17160 -0.7 -1.5 Eco57I restriction-modification methylase domain-containing protein compare
LRK54_RS12865 -0.7 -3.8 HPr(Ser) kinase/phosphatase compare
LRK54_RS15015 -0.7 -3.5 Ppx/GppA family phosphatase compare
LRK54_RS10075 -0.7 -1.1 tetratricopeptide repeat protein compare
LRK54_RS12580 -0.7 -1.9 hypothetical protein compare
LRK54_RS04995 -0.7 -2.3 LacI family DNA-binding transcriptional regulator compare
LRK54_RS18105 -0.7 -2.1 DNA oxidative demethylase AlkB compare
LRK54_RS11565 -0.7 -1.8 anthranilate phosphoribosyltransferase compare
LRK54_RS00805 -0.7 -1.9 segregation/condensation protein A compare
LRK54_RS13830 -0.7 -3.5 SDR family NAD(P)-dependent oxidoreductase compare
LRK54_RS07005 -0.7 -4.9 spore coat protein U domain-containing protein compare
LRK54_RS00620 -0.7 -4.1 FtsH protease activity modulator HflK compare
LRK54_RS04615 -0.6 -2.6 transcriptional regulator NrdR compare
LRK54_RS02815 -0.6 -0.8 hypothetical protein compare
LRK54_RS16735 -0.6 -5.2 endopeptidase La compare
LRK54_RS00395 -0.6 -1.8 prephenate dehydratase compare
LRK54_RS16810 -0.6 -1.7 hypothetical protein compare
LRK54_RS04185 -0.6 -1.0 chemotaxis protein CheW compare
LRK54_RS13760 -0.6 -3.6 trypsin-like peptidase domain-containing protein compare
LRK54_RS06425 -0.6 -1.0 ribonucleoside-diphosphate reductase compare
LRK54_RS09180 -0.6 -5.9 phosphomannomutase/phosphoglucomutase compare
LRK54_RS11570 -0.6 -1.7 indole-3-glycerol phosphate synthase TrpC compare
LRK54_RS00575 -0.6 -1.0 hypothetical protein compare
LRK54_RS16720 -0.6 -3.2 trigger factor compare
LRK54_RS06470 -0.6 -3.8 carboxy terminal-processing peptidase compare
LRK54_RS05505 -0.6 -3.0 glycine cleavage system protein GcvH compare
LRK54_RS09250 -0.6 -5.5 rhomboid family intramembrane serine protease compare
LRK54_RS00440 -0.6 -2.9 high frequency lysogenization protein HflD compare
LRK54_RS14735 -0.6 -3.1 methionine ABC transporter ATP-binding protein compare
LRK54_RS16935 -0.6 -4.9 bifunctional diguanylate cyclase/phosphodiesterase compare
LRK54_RS13625 -0.6 -1.0 flagellar hook-length control protein FliK compare
LRK54_RS02185 -0.6 -1.9 exodeoxyribonuclease V subunit alpha compare
LRK54_RS17505 -0.6 -1.7 preprotein translocase subunit SecG compare
LRK54_RS08760 -0.6 -2.0 transaldolase compare
LRK54_RS16160 -0.6 -0.7 DUF1674 domain-containing protein compare
LRK54_RS11170 -0.6 -2.5 NADP-dependent malic enzyme compare
LRK54_RS16930 -0.6 -4.0 hypothetical protein compare
LRK54_RS02175 -0.6 -3.4 exodeoxyribonuclease V subunit gamma compare
LRK54_RS05635 -0.6 -3.4 dehydrogenase compare
LRK54_RS07865 -0.6 -1.6 GntR family transcriptional regulator compare
LRK54_RS12190 -0.6 -3.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
LRK54_RS00305 -0.6 -3.9 asparagine synthase B compare
LRK54_RS15925 -0.6 -1.7 carboxymuconolactone decarboxylase family protein compare
LRK54_RS12330 -0.5 -1.9 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
LRK54_RS18005 -0.5 -2.8 transcription elongation factor GreA compare
LRK54_RS17210 -0.5 -1.7 hypothetical protein compare
LRK54_RS12985 -0.5 -2.7 inorganic phosphate transporter compare
LRK54_RS11975 -0.5 -2.7 SLC13 family permease compare
LRK54_RS07220 -0.5 -2.9 thiol:disulfide interchange protein DsbA/DsbL compare
LRK54_RS01520 -0.5 -4.1 amino acid permease compare
LRK54_RS14370 -0.5 -2.0 Lrp/AsnC family transcriptional regulator compare
LRK54_RS14180 -0.5 -3.0 efflux transporter outer membrane subunit compare
LRK54_RS05985 -0.5 -0.3 response regulator transcription factor compare
LRK54_RS07715 -0.5 -3.2 LacI family DNA-binding transcriptional regulator compare
LRK54_RS17830 -0.5 -0.6 mercury resistance system periplasmic binding protein MerP compare
LRK54_RS00675 -0.5 -3.5 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK54_RS15165 -0.5 -2.0 enoyl-CoA hydratase-related protein compare
LRK54_RS02365 -0.5 -1.1 ABC transporter ATP-binding protein compare
LRK54_RS00080 -0.5 -2.9 helix-turn-helix domain-containing protein compare
LRK54_RS09200 -0.5 -3.9 MFS transporter compare
LRK54_RS06885 -0.5 -2.9 rhodanese-like domain-containing protein compare
LRK54_RS08540 -0.5 -2.2 DUF484 family protein compare
LRK54_RS02090 -0.5 -4.1 NAD-glutamate dehydrogenase compare
LRK54_RS05630 -0.5 -2.4 D-sedoheptulose 7-phosphate isomerase compare
LRK54_RS16660 -0.5 -3.2 VTT domain-containing protein compare
LRK54_RS11585 -0.5 -4.0 cAMP-activated global transcriptional regulator CRP compare
LRK54_RS00175 -0.5 -0.6 transposase compare
LRK54_RS12625 -0.5 -3.5 bifunctional aspartate kinase/diaminopimelate decarboxylase compare
LRK54_RS16955 -0.5 -3.4 translation elongation factor 4 compare
LRK54_RS10360 -0.5 -1.7 homoserine kinase compare
LRK54_RS06725 -0.5 -3.0 zinc-finger domain-containing protein compare
LRK54_RS00740 -0.5 -1.9 peptidylprolyl isomerase compare
LRK54_RS12300 -0.5 -1.6 Co2+/Mg2+ efflux protein ApaG compare
LRK54_RS02975 -0.5 -3.4 alpha/beta fold hydrolase compare
LRK54_RS05990 -0.5 -2.8 hypothetical protein compare
LRK54_RS05775 -0.5 -3.0 pyruvate kinase compare
LRK54_RS10340 -0.5 -2.9 branched-chain amino acid transaminase compare
LRK54_RS16945 -0.5 -1.5 sigma-E factor negative regulatory protein compare
LRK54_RS12735 -0.5 -1.3 NAD-dependent epimerase/dehydratase family protein compare
LRK54_RS07735 -0.5 -3.2 metalloregulator ArsR/SmtB family transcription factor compare
LRK54_RS04165 -0.5 -0.8 chemotaxis protein CheW compare
LRK54_RS04585 -0.5 -2.1 muramoyltetrapeptide carboxypeptidase compare
LRK54_RS01285 -0.5 -1.9 3-deoxy-D-manno-octulosonic acid kinase compare
LRK54_RS04720 -0.5 -2.4 phosphoribosylformylglycinamidine synthase compare
LRK54_RS16650 -0.5 -2.2 5'/3'-nucleotidase SurE compare
LRK54_RS16255 -0.4 -0.6 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS10005 -0.4 -2.0 general secretion pathway protein GspN compare
LRK54_RS16670 -0.4 -3.0 Mth938-like domain-containing protein compare
LRK54_RS03365 -0.4 -2.0 polyprenyl synthetase family protein compare
LRK54_RS06605 -0.4 -1.9 LON peptidase substrate-binding domain-containing protein compare
LRK54_RS05930 -0.4 -2.1 arginase compare
LRK54_RS04625 -0.4 -3.0 serine hydroxymethyltransferase compare
LRK54_RS03040 -0.4 -1.7 MtnX-like HAD-IB family phosphatase compare
LRK54_RS03875 -0.4 -3.8 pilin compare
LRK54_RS09125 -0.4 -1.9 hypothetical protein compare
LRK54_RS13915 -0.4 -3.5 beta-ketoacyl-ACP synthase I compare
LRK54_RS05260 -0.4 -1.8 hypothetical protein compare
LRK54_RS17035 -0.4 -1.2 copper homeostasis protein CutC compare
LRK54_RS12595 -0.4 -1.7 (2Fe-2S)-binding protein compare
LRK54_RS04940 -0.4 -1.2 zinc ribbon domain-containing protein compare
LRK54_RS13620 -0.4 -0.8 hypothetical protein compare
LRK54_RS03405 -0.4 -2.6 ribonuclease G compare
LRK54_RS15970 -0.4 -1.2 DUF4190 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Rhodanobacter denitrificans FW104-10B01 in nldm low iron experiments

For nldm low iron Iron (II) sulfate heptahydrate across organisms