Experiment set14S112 for Phocaeicola vulgatus CL09T03C04

Compare to:

Brucella 1x carbon source complex media

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS12455 -4.4 -3.5 dUTP diphosphatase compare
HMPREF1058_RS11310 -3.9 -7.4 undecaprenyl-diphosphate phosphatase compare
HMPREF1058_RS16500 -3.4 -6.8 OadG family protein compare
HMPREF1058_RS10840 -2.9 -3.4 hypothetical protein compare
HMPREF1058_RS17205 -2.9 -3.4 DUF4199 domain-containing protein compare
HMPREF1058_RS15395 -2.9 -3.9 dihydroorotase compare
HMPREF1058_RS03980 -2.8 -2.6 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
HMPREF1058_RS02800 -2.7 -7.6 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS14465 -2.6 -4.4 enoyl-ACP reductase compare
HMPREF1058_RS02755 -2.3 -1.6 translocation/assembly module TamB domain-containing protein compare
HMPREF1058_RS13970 -2.3 -3.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS21570 -2.2 -1.4 hypothetical protein compare
HMPREF1058_RS03085 -2.2 -2.9 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS16505 -2.1 -8.1 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS07245 -2.1 -5.2 Rne/Rng family ribonuclease compare
HMPREF1058_RS21685 -2.0 -1.1 hypothetical protein compare
HMPREF1058_RS11205 -2.0 -1.7 radical SAM protein compare
HMPREF1058_RS02220 -2.0 -5.0 branched-chain amino acid aminotransferase compare
HMPREF1058_RS02750 -1.9 -1.3 BamA/TamA family outer membrane protein compare
HMPREF1058_RS11890 -1.9 -5.2 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS12505 -1.9 -5.7 RNA polymerase factor sigma-54 compare
HMPREF1058_RS01800 -1.8 -4.1 crossover junction endodeoxyribonuclease RuvC compare
HMPREF1058_RS15665 -1.8 -5.8 MFS transporter compare
HMPREF1058_RS04080 -1.8 -4.1 AAA family ATPase compare
HMPREF1058_RS15520 -1.7 -4.3 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS15965 -1.6 -5.3 recombinase RecA compare
HMPREF1058_RS07575 -1.6 -5.5 MCE family protein compare
HMPREF1058_RS10920 -1.5 -3.4 viroplasmin family protein compare
HMPREF1058_RS14220 -1.5 -3.5 energy transducer TonB compare
HMPREF1058_RS05140 -1.4 -4.8 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS03075 -1.4 -4.0 DNA helicase RecQ compare
HMPREF1058_RS16730 -1.4 -3.0 chorismate synthase compare
HMPREF1058_RS14225 -1.4 -6.0 polyprenyl synthetase family protein compare
HMPREF1058_RS17940 -1.4 -6.0 alpha-amylase compare
HMPREF1058_RS06330 -1.4 -4.5 RnfABCDGE type electron transport complex subunit G compare
HMPREF1058_RS08535 -1.4 -1.8 elongation factor P compare
HMPREF1058_RS07735 -1.3 -3.7 chloride channel protein compare
HMPREF1058_RS11930 -1.3 -2.8 CPBP family intramembrane metalloprotease compare
HMPREF1058_RS04115 -1.3 -1.9 CinA family protein compare
HMPREF1058_RS10835 -1.3 -4.9 UDP-galactopyranose mutase compare
HMPREF1058_RS08295 -1.3 -6.2 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS17080 -1.3 -2.0 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS06560 -1.3 -5.6 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1058_RS17385 -1.3 -2.8 DUF4248 domain-containing protein compare
HMPREF1058_RS14130 -1.2 -4.8 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
HMPREF1058_RS13735 -1.2 -3.3 hypothetical protein compare
HMPREF1058_RS21480 -1.2 -2.3 hypothetical protein compare
HMPREF1058_RS10270 -1.2 -3.1 hypothetical protein compare
HMPREF1058_RS15435 -1.1 -6.1 hypothetical protein compare
HMPREF1058_RS11490 -1.1 -3.1 redox-regulated ATPase YchF compare
HMPREF1058_RS00595 -1.1 -2.2 Holliday junction branch migration protein RuvA compare
HMPREF1058_RS03510 -1.1 -4.4 YebC/PmpR family DNA-binding transcriptional regulator compare
HMPREF1058_RS05360 -1.1 -2.1 helix-turn-helix domain-containing protein compare
HMPREF1058_RS11380 -1.0 -4.2 DUF4271 domain-containing protein compare
HMPREF1058_RS13635 -1.0 -2.4 gliding motility lipoprotein GldH compare
HMPREF1058_RS11040 -1.0 -4.2 polysaccharide deacetylase family protein compare
HMPREF1058_RS03105 -1.0 -2.0 ABC transporter permease compare
HMPREF1058_RS17565 -1.0 -1.1 tyrosine-type recombinase/integrase compare
HMPREF1058_RS16845 -1.0 -3.7 SurA N-terminal domain-containing protein compare
HMPREF1058_RS14590 -1.0 -1.8 AraC family transcriptional regulator compare
HMPREF1058_RS12775 -1.0 -2.8 hypothetical protein compare
HMPREF1058_RS17815 -1.0 -3.7 MFS transporter compare
HMPREF1058_RS18895 -1.0 -1.5 hypothetical protein compare
HMPREF1058_RS03530 -1.0 -1.1 PD-(D/E)XK nuclease family protein compare
HMPREF1058_RS17060 -1.0 -3.9 HAD family hydrolase compare
HMPREF1058_RS04075 -1.0 -1.7 DUF58 domain-containing protein compare
HMPREF1058_RS14215 -0.9 -2.5 (d)CMP kinase compare
HMPREF1058_RS07655 -0.9 -2.1 hypothetical protein compare
HMPREF1058_RS07540 -0.9 -1.1 acetyltransferase compare
HMPREF1058_RS11910 -0.9 -4.7 DEAD/DEAH box helicase compare
HMPREF1058_RS12070 -0.9 -2.1 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS04070 -0.9 -2.8 hypothetical protein compare
HMPREF1058_RS01265 -0.9 -1.5 FHA domain-containing protein compare
HMPREF1058_RS13730 -0.9 -2.4 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
HMPREF1058_RS03110 -0.9 -4.8 ABC transporter ATP-binding protein compare
HMPREF1058_RS17935 -0.9 -4.3 glycosyltransferase compare
HMPREF1058_RS04050 -0.9 -3.1 protein BatD compare
HMPREF1058_RS02970 -0.9 -3.0 DNA mismatch repair endonuclease MutL compare
HMPREF1058_RS16495 -0.9 -2.1 biotin/lipoyl-binding protein compare
HMPREF1058_RS05880 -0.9 -2.1 DUF5063 domain-containing protein compare
HMPREF1058_RS05615 -0.9 -0.9 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS11815 -0.9 -4.6 tRNA 2-thiouridine(34) synthase MnmA compare
HMPREF1058_RS03450 -0.8 -2.1 hypothetical protein compare
HMPREF1058_RS07670 -0.8 -1.9 HAMP domain-containing histidine kinase compare
HMPREF1058_RS06310 -0.8 -3.9 UDP-glucose 4-epimerase GalE compare
HMPREF1058_RS11500 -0.8 -4.7 DNA polymerase I compare
HMPREF1058_RS05920 -0.8 -1.4 hypothetical protein compare
HMPREF1058_RS09990 -0.8 -5.4 5'-methylthioadenosine/adenosylhomocysteine nucleosidase compare
HMPREF1058_RS06340 -0.8 -2.7 electron transport complex subunit RsxC compare
HMPREF1058_RS09680 -0.8 -2.8 site-specific tyrosine recombinase XerD compare
HMPREF1058_RS15375 -0.8 -1.1 DUF4369 domain-containing protein compare
HMPREF1058_RS04940 -0.8 -2.7 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS06320 -0.8 -3.5 electron transport complex subunit RsxA compare
HMPREF1058_RS03305 -0.8 -4.2 UvrD-helicase domain-containing protein compare
HMPREF1058_RS09445 -0.8 -0.9 tyrosine-type recombinase/integrase compare
HMPREF1058_RS05005 -0.8 -2.5 hypothetical protein compare
HMPREF1058_RS10955 -0.7 -3.3 phosphatase PAP2 family protein compare
HMPREF1058_RS16755 -0.7 -1.5 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HMPREF1058_RS11940 -0.7 -2.3 DUF3836 domain-containing protein compare
HMPREF1058_RS06190 -0.7 -3.2 aspartate kinase compare
HMPREF1058_RS17055 -0.7 -3.5 flippase-like domain-containing protein compare
HMPREF1058_RS04065 -0.7 -1.0 VWA domain-containing protein compare
HMPREF1058_RS05415 -0.7 -1.8 Hsp20/alpha crystallin family protein compare
HMPREF1058_RS09905 -0.7 -1.5 conjugative transposon protein TraK compare
HMPREF1058_RS18525 -0.7 -1.2 hypothetical protein compare
HMPREF1058_RS15895 -0.7 -2.6 transcriptional repressor compare
HMPREF1058_RS08520 -0.7 -1.6 DUF59 domain-containing protein compare
HMPREF1058_RS10275 -0.7 -4.5 RNA-splicing ligase RtcB compare
HMPREF1058_RS09960 -0.7 -2.2 hypothetical protein compare
HMPREF1058_RS17765 -0.7 -3.1 Do family serine endopeptidase compare
HMPREF1058_RS09440 -0.7 -2.0 ribosome-associated translation inhibitor RaiA compare
HMPREF1058_RS14585 -0.7 -3.2 DNA helicase RecQ compare
HMPREF1058_RS06600 -0.7 -1.4 DedA family protein compare
HMPREF1058_RS04995 -0.7 -4.1 putative sulfate exporter family transporter compare
HMPREF1058_RS02335 -0.7 -1.1 hypothetical protein compare
HMPREF1058_RS02170 -0.7 -3.7 hypothetical protein compare
HMPREF1058_RS12525 -0.7 -2.9 Na/Pi cotransporter family protein compare
HMPREF1058_RS03200 -0.7 -2.3 V-type ATP synthase subunit K compare
HMPREF1058_RS15670 -0.7 -3.3 galactose mutarotase compare
HMPREF1058_RS16510 -0.6 -2.1 methylmalonyl-CoA epimerase compare
HMPREF1058_RS21515 -0.6 -2.7 hypothetical protein compare
HMPREF1058_RS16760 -0.6 -1.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS10160 -0.6 -1.4 hypothetical protein compare
HMPREF1058_RS18505 -0.6 -0.7 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS00515 -0.6 -4.0 YicC family protein compare
HMPREF1058_RS14305 -0.6 -1.1 DNA topoisomerase 3 compare
HMPREF1058_RS05070 -0.6 -1.9 hypothetical protein compare
HMPREF1058_RS07040 -0.6 -3.4 tetratricopeptide repeat protein compare
HMPREF1058_RS0119575 -0.6 -1.2 hypothetical protein compare
HMPREF1058_RS04025 -0.6 -3.0 hypothetical protein compare
HMPREF1058_RS10345 -0.6 -2.3 hypothetical protein compare
HMPREF1058_RS10330 -0.6 -1.9 hypothetical protein compare
HMPREF1058_RS03910 -0.6 -2.9 alpha amylase C-terminal domain-containing protein compare
HMPREF1058_RS0119485 -0.6 -1.7 DUF1573 domain-containing protein compare
HMPREF1058_RS09700 -0.6 -1.4 methionine--tRNA ligase compare
HMPREF1058_RS04530 -0.6 -0.8 hypothetical protein compare
HMPREF1058_RS06335 -0.6 -3.7 RnfABCDGE type electron transport complex subunit D compare
HMPREF1058_RS06380 -0.6 -2.3 copper homeostasis protein CutC compare
HMPREF1058_RS05540 -0.6 -1.8 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS01865 -0.6 -1.2 hypothetical protein compare
HMPREF1058_RS13245 -0.6 -1.1 hypothetical protein compare
HMPREF1058_RS05550 -0.6 -2.0 relaxase/mobilization nuclease domain-containing protein compare
HMPREF1058_RS07820 -0.6 -1.5 NVEALA domain-containing protein compare
HMPREF1058_RS04410 -0.6 -1.0 porin family protein compare
HMPREF1058_RS20295 -0.6 -1.1 hypothetical protein compare
HMPREF1058_RS04825 -0.6 -2.1 hypothetical protein compare
HMPREF1058_RS03535 -0.6 -0.5 UvrD-helicase domain-containing protein compare
HMPREF1058_RS09985 -0.6 -1.3 hypothetical protein compare
HMPREF1058_RS12240 -0.6 -1.7 lysine exporter LysO family protein compare
HMPREF1058_RS04375 -0.6 -3.2 carbon-nitrogen hydrolase compare
HMPREF1058_RS11920 -0.6 -3.0 DUF2975 domain-containing protein compare
HMPREF1058_RS03580 -0.6 -0.9 UpxY family transcription antiterminator compare
HMPREF1058_RS0120000 -0.5 -1.7 hypothetical protein compare
HMPREF1058_RS19095 -0.5 -3.0 GNAT family N-acetyltransferase compare
HMPREF1058_RS03585 -0.5 -1.7 hypothetical protein compare
HMPREF1058_RS08320 -0.5 -2.1 MotA/TolQ/ExbB proton channel family protein compare
HMPREF1058_RS06410 -0.5 -1.3 elongation factor 4 compare
HMPREF1058_RS08615 -0.5 -3.3 RluA family pseudouridine synthase compare
HMPREF1058_RS10255 -0.5 -1.0 hypothetical protein compare
HMPREF1058_RS12995 -0.5 -1.1 hypothetical protein compare
HMPREF1058_RS06005 -0.5 -0.8 GlsB/YeaQ/YmgE family stress response membrane protein compare
HMPREF1058_RS01905 -0.5 -1.4 hypothetical protein compare
HMPREF1058_RS0119735 -0.5 -1.7 hypothetical protein compare
HMPREF1058_RS17930 -0.5 -3.2 glycogen debranching enzyme N-terminal domain-containing protein compare
HMPREF1058_RS10295 -0.5 -0.6 hypothetical protein compare
HMPREF1058_RS17160 -0.5 -1.6 DUF4847 family protein compare
HMPREF1058_RS02405 -0.5 -4.1 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS06460 -0.5 -1.2 hypothetical protein compare
HMPREF1058_RS16625 -0.5 -1.9 hypothetical protein compare
HMPREF1058_RS10360 -0.5 -1.0 hypothetical protein compare
HMPREF1058_RS16150 -0.5 -2.9 glycosyltransferase compare
HMPREF1058_RS11375 -0.5 -0.4 TIGR00730 family Rossman fold protein compare
HMPREF1058_RS10290 -0.5 -1.6 hypothetical protein compare
HMPREF1058_RS18050 -0.5 -1.2 DUF4492 domain-containing protein compare
HMPREF1058_RS10355 -0.5 -1.5 hypothetical protein compare
HMPREF1058_RS18265 -0.5 -1.4 aspartate 1-decarboxylase compare
HMPREF1058_RS18155 -0.5 -1.3 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS05780 -0.5 -3.1 PD40 domain-containing protein compare
HMPREF1058_RS15390 -0.5 -1.5 5-methyltetrahydrofolate--homocysteine methyltransferase compare
HMPREF1058_RS04235 -0.5 -1.3 NUDIX hydrolase compare
HMPREF1058_RS10230 -0.5 -1.7 hypothetical protein compare
HMPREF1058_RS07570 -0.5 -2.8 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS06420 -0.5 -2.2 type II toxin-antitoxin system HicA family toxin compare
HMPREF1058_RS0119490 -0.5 -1.9 DDE transposase compare
HMPREF1058_RS00560 -0.5 -1.0 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS21565 -0.5 -2.2 hypothetical protein compare
HMPREF1058_RS01470 -0.5 -2.3 hypothetical protein compare
HMPREF1058_RS04950 -0.5 -0.9 hypothetical protein compare
HMPREF1058_RS06540 -0.5 -1.6 hypothetical protein compare
HMPREF1058_RS03545 -0.5 -1.6 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS0119755 -0.5 -1.4 hypothetical protein compare
HMPREF1058_RS07635 -0.5 -1.4 50S ribosomal protein L9 compare
HMPREF1058_RS02015 -0.5 -2.1 ASCH domain-containing protein compare
HMPREF1058_RS01725 -0.5 -1.9 peptide MFS transporter compare
HMPREF1058_RS21310 -0.5 -1.2 hypothetical protein compare
HMPREF1058_RS16710 -0.5 -2.4 hypothetical protein compare
HMPREF1058_RS13230 -0.5 -2.1 hypothetical protein compare
HMPREF1058_RS05500 -0.5 -1.9 helix-turn-helix domain-containing protein compare
HMPREF1058_RS15280 -0.5 -1.3 tRNA-Ser compare
HMPREF1058_RS12490 -0.5 -2.0 5-(carboxyamino)imidazole ribonucleotide mutase compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in carbon source complex media experiments

For carbon source complex media Brucella across organisms