Experiment set14IT089 for Pseudomonas fluorescens FW300-N2E2

Compare to:

20 mM putrescine dihydrochloride

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2258 -4.9 -32.5 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3839 -4.5 -4.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5156 -4.3 -6.5 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_5338 -3.8 -14.2 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_71 -3.8 -6.1 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_4511 -3.7 -14.6 glutamine synthetase family protein compare
Pf6N2E2_4509 -3.7 -14.4 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) compare
Pf6N2E2_4826 -3.6 -4.8 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_77 -3.4 -4.0 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_3248 -3.4 -5.4 Probable transmembrane protein compare
Pf6N2E2_3782 -3.3 -4.5 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4187 -3.3 -6.8 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3253 -3.3 -7.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_4825 -3.2 -8.8 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_5339 -3.2 -9.0 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_4597 -3.1 -7.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4048 -3.0 -5.3 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_3783 -3.0 -5.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_5177 -2.9 -9.3 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_4512 -2.9 -13.1 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) compare
Pf6N2E2_4516 -2.9 -7.3 Putrescine transport system permease protein PotH (TC 3.A.1.11.2) compare
Pf6N2E2_3932 -2.9 -5.0 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_5337 -2.8 -9.5 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_4513 -2.8 -9.4 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) compare
Pf6N2E2_3610 -2.8 -5.3 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_4515 -2.8 -8.5 Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) compare
Pf6N2E2_4391 -2.8 -10.8 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf6N2E2_3300 -2.8 -2.6 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_4383 -2.7 -9.1 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) compare
Pf6N2E2_3869 -2.7 -7.5 Branched-chain amino acid transport protein AzlC compare
Pf6N2E2_3842 -2.7 -5.0 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3328 -2.7 -3.5 transcriptional regulator compare
Pf6N2E2_2753 -2.7 -2.5 HtrA protease/chaperone protein compare
Pf6N2E2_64 -2.6 -3.3 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_5157 -2.6 -12.5 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf6N2E2_2073 -2.5 -6.1 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_3630 -2.5 -2.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2261 -2.4 -15.0 VacJ-like lipoprotein precursor compare
Pf6N2E2_63 -2.4 -4.0 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_3258 -2.4 -10.5 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_80 -2.4 -8.8 gamma-glutamylputrescine oxidase (EC 1.4.3.-) (from data) compare
Pf6N2E2_4564 -2.3 -8.5 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_3260 -2.3 -10.2 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_66 -2.3 -9.5 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_3665 -2.3 -1.9 serine/threonine protein kinase compare
Pf6N2E2_4514 -2.2 -7.8 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) compare
Pf6N2E2_4596 -2.0 -5.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4743 -2.0 -1.1 hypothetical protein compare
Pf6N2E2_2552 -1.9 -7.2 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_4153 -1.9 -1.3 Sensory box histidine kinase compare
Pf6N2E2_3257 -1.9 -6.8 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_2707 -1.9 -5.7 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_5728 -1.9 -3.6 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_3786 -1.8 -4.1 Twin-arginine translocation protein TatC compare
Pf6N2E2_5252 -1.8 -1.2 FIG00956396: hypothetical protein compare
Pf6N2E2_3940 -1.8 -8.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_5899 -1.8 -6.8 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_4159 -1.8 -1.2 Cytochrome c4 compare
Pf6N2E2_302 -1.7 -4.6 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3521 -1.7 -6.1 Sensor histidine kinase/response regulator compare
Pf6N2E2_4803 -1.7 -1.5 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2320 -1.7 -4.6 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_4351 -1.7 -8.5 Predicted signal transduction protein compare
Pf6N2E2_5158 -1.6 -4.5 FIG00954153: hypothetical protein compare
Pf6N2E2_3170 -1.6 -7.1 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_2318 -1.6 -9.6 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_146 -1.6 -1.7 Transcriptional regulator, MarR family compare
Pf6N2E2_5257 -1.6 -9.5 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_5258 -1.6 -7.9 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_5176 -1.6 -2.1 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_4800 -1.5 -10.4 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) compare
Pf6N2E2_3655 -1.5 -10.7 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_2340 -1.5 -2.2 Transcriptional regulator, GntR family compare
Pf6N2E2_3656 -1.5 -5.3 Probable transcription regulator Mig-14 compare
Pf6N2E2_5894 -1.4 -5.2 Putative threonine efflux protein compare
Pf6N2E2_5545 -1.4 -2.3 Queuosine Biosynthesis QueE Radical SAM compare
Pf6N2E2_4390 -1.4 -7.6 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_3393 -1.4 -5.6 Queuosine Biosynthesis QueC ATPase compare
Pf6N2E2_4059 -1.4 -1.1 DNA-binding protein HU-alpha compare
Pf6N2E2_2708 -1.4 -4.8 Lactam utilization protein LamB compare
Pf6N2E2_2312 -1.4 -1.8 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_37 -1.4 -1.5 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_2012 -1.4 -1.1 hypothetical protein compare
Pf6N2E2_3251 -1.4 -8.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_2588 -1.3 -2.6 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_4801 -1.3 -9.7 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
Pf6N2E2_5160 -1.3 -0.8 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_2752 -1.3 -6.5 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_2455 -1.3 -4.8 FIG00953957: hypothetical protein compare
Pf6N2E2_4824 -1.3 -5.1 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf6N2E2_2465 -1.3 -5.3 Cys regulon transcriptional activator CysB compare
Pf6N2E2_2317 -1.3 -3.8 Putative analog of CcoH, COG3198 compare
Pf6N2E2_4799 -1.3 -8.8 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
Pf6N2E2_682 -1.2 -4.5 Predicted regulator PutR for proline utilization, GntR family compare
Pf6N2E2_4418 -1.2 -0.7 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_1315 -1.2 -2.3 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_2984 -1.2 -2.1 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_1694 -1.2 -1.6 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_510 -1.2 -5.3 Predicted transcriptional regulator of the myo-inositol catabolic operon compare
Pf6N2E2_3807 -1.2 -4.6 Histidine utilization repressor compare
Pf6N2E2_218 -1.2 -2.5 hypothetical protein compare
Pf6N2E2_2527 -1.2 -1.4 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_5391 -1.2 -6.6 Predicted ATPase related to phosphate starvation-inducible protein PhoH compare
Pf6N2E2_84 -1.2 -2.2 hypothetical protein compare
Pf6N2E2_5679 -1.2 -2.7 hypothetical protein compare
Pf6N2E2_1652 -1.2 -1.6 Transcriptional regulator, TetR family compare
Pf6N2E2_3252 -1.2 -3.9 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_2442 -1.2 -6.2 sensor histidine kinase/response regulator compare
Pf6N2E2_1611 -1.2 -3.4 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf6N2E2_5520 -1.1 -4.8 Sensory box histidine kinase compare
Pf6N2E2_3899 -1.1 -3.8 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_4451 -1.1 -4.3 FIG139438: lipoprotein B compare
Pf6N2E2_2835 -1.1 -2.0 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_40 -1.1 -2.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2447 -1.1 -4.1 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_384 -1.1 -2.1 Glycine cleavage system transcriptional activator compare
Pf6N2E2_4517 -1.1 -1.0 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
Pf6N2E2_5647 -1.1 -2.4 Transcriptional regulator, TetR family compare
Pf6N2E2_3785 -1.1 -3.2 Twin-arginine translocation protein TatB compare
Pf6N2E2_2675 -1.1 -0.5 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_3349 -1.0 -1.2 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_4761 -1.0 -2.4 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_3868 -1.0 -4.7 Transcriptional regulator, LysR family compare
Pf6N2E2_3762 -1.0 -3.2 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf6N2E2_5841 -1.0 -0.5 GlcG protein compare
Pf6N2E2_863 -1.0 -3.8 Transcriptional regulator, IclR family compare
Pf6N2E2_2479 -1.0 -2.1 Transcription elongation factor GreB compare
Pf6N2E2_4817 -1.0 -7.5 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) compare
Pf6N2E2_5093 -1.0 -6.6 ATP-dependent protease La (EC 3.4.21.53) Type II compare
Pf6N2E2_3841 -1.0 -0.9 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_2865 -1.0 -6.4 Gluconate utilization system Gnt-I transcriptional repressor compare
Pf6N2E2_2827 -1.0 -1.0 hypothetical protein compare
Pf6N2E2_3666 -1.0 -3.9 InaA protein compare
Pf6N2E2_3384 -1.0 -3.2 Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG compare
Pf6N2E2_2706 -1.0 -2.8 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_3282 -1.0 -1.3 FIG005080: Possible exported protein compare
Pf6N2E2_3039 -1.0 -4.5 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_1463 -1.0 -1.5 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf6N2E2_2200 -1.0 -0.9 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_5956 -1.0 -3.8 FIG004453: protein YceG like compare
Pf6N2E2_3201 -0.9 -2.0 Transcriptional regulator, MerR family compare
Pf6N2E2_3938 -0.9 -6.2 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_1673 -0.9 -1.8 Transcriptional regulator, TetR family compare
Pf6N2E2_3095 -0.9 -1.3 hypothetical protein compare
Pf6N2E2_733 -0.9 -2.7 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Pf6N2E2_827 -0.9 -1.8 probable dioxygenase compare
Pf6N2E2_1560 -0.9 -2.5 Glycine cleavage system transcriptional activator GcvA compare
Pf6N2E2_2466 -0.9 -4.9 Universal stress protein family compare
Pf6N2E2_1396 -0.9 -2.4 ABC transporter, ATP-binding protein compare
Pf6N2E2_2967 -0.9 -1.0 Cold shock protein CspA compare
Pf6N2E2_2373 -0.9 -2.7 Type III secretion thermoregulatory protein (LcrF,VirF,transcription regulation of virulence plasmid) compare
Pf6N2E2_3279 -0.9 -2.9 FIG138315: Putative alpha helix protein compare
Pf6N2E2_5810 -0.9 -2.3 Homoserine/homoserine lactone efflux protein compare
Pf6N2E2_451 -0.9 -1.6 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_1044 -0.9 -1.2 hypothetical protein compare
Pf6N2E2_424 -0.9 -3.2 Decarboxylase family protein compare
Pf6N2E2_2324 -0.9 -1.8 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf6N2E2_2869 -0.9 -0.9 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_1433 -0.9 -2.1 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_5538 -0.9 -3.3 4-hydroxybenzoyl-CoA thioesterase family active site compare
Pf6N2E2_2201 -0.9 -2.1 Transmembrane regulator protein PrtR compare
Pf6N2E2_5300 -0.9 -4.2 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_4050 -0.8 -1.5 FIG00953718: hypothetical protein compare
Pf6N2E2_477 -0.8 -2.8 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf6N2E2_3834 -0.8 -2.9 Lipoprotein NlpD compare
Pf6N2E2_1685 -0.8 -2.9 Vitamin B12 ABC transporter, B12-binding component BtuF compare
Pf6N2E2_2071 -0.8 -1.8 hypothetical protein compare
Pf6N2E2_5645 -0.8 -2.3 Transcriptional regulator, LysR family compare
Pf6N2E2_2473 -0.8 -1.5 Major outer membrane lipoprotein I compare
Pf6N2E2_2587 -0.8 -5.2 Serine phosphatase RsbU, regulator of sigma subunit compare
Pf6N2E2_1201 -0.8 -2.8 hypothetical protein compare
Pf6N2E2_953 -0.8 -1.1 FIG00958851: hypothetical protein compare
Pf6N2E2_5012 -0.8 -3.0 FIG00954871: hypothetical protein compare
Pf6N2E2_1774 -0.8 -1.0 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_1293 -0.8 -1.7 COG2879, Hypothetical small protein yjiX compare
Pf6N2E2_2501 -0.8 -1.6 hypothetical protein compare
Pf6N2E2_4708 -0.8 -2.6 hypothetical protein compare
Pf6N2E2_2124 -0.8 -1.1 Mg(2+) transport ATPase protein C compare
Pf6N2E2_1490 -0.8 -1.2 hypothetical protein compare
Pf6N2E2_292 -0.8 -2.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf6N2E2_5522 -0.8 -1.2 FIG001943: hypothetical protein YajQ compare
Pf6N2E2_2388 -0.8 -2.0 Esterase/lipase/thioesterase family protein compare
Pf6N2E2_3019 -0.8 -2.9 FIG00954559: hypothetical protein compare
Pf6N2E2_5312 -0.8 -1.8 FIG00964214: hypothetical protein compare
Pf6N2E2_2390 -0.8 -2.0 FIG00959101: hypothetical protein compare
Pf6N2E2_5676 -0.8 -1.3 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_4454 -0.8 -3.0 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_1779 -0.8 -1.3 Positive regulator of CheA protein activity (CheW) compare
Pf6N2E2_1508 -0.8 -1.6 DNA-binding response regulator compare
Pf6N2E2_5006 -0.8 -0.5 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5950 -0.8 -1.3 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_1081 -0.8 -2.3 probable membrane protein YPO3302 compare
Pf6N2E2_2858 -0.8 -1.9 Phosphohydrolase (MutT/nudix family protein) compare
Pf6N2E2_3326 -0.8 -1.0 hypothetical protein compare
Pf6N2E2_4607 -0.8 -1.7 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Pf6N2E2_5666 -0.8 -3.1 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_2080 -0.8 -1.6 hypothetical protein compare
Pf6N2E2_3499 -0.8 -2.0 Permeases of the major facilitator superfamily compare
Pf6N2E2_1323 -0.8 -1.1 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_78 -0.8 -2.9 Oxidoreductase, short chain dehydrogenase/reductase family compare


Specific Phenotypes

For 7 genes in this experiment