Experiment set14IT085 for Pseudomonas fluorescens FW300-N2E2

Compare to:

10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine dihydrochloride

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2258 -4.6 -31.3 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3839 -4.0 -6.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4509 -4.0 -14.9 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) conserved
Pf6N2E2_4826 -3.6 -5.4 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_3842 -3.5 -4.7 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_4597 -3.5 -7.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3253 -3.4 -7.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_5156 -3.3 -6.9 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_3610 -3.3 -7.1 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_4187 -3.3 -6.8 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5338 -3.3 -15.0 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_3932 -3.2 -6.7 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_5339 -3.2 -10.2 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_5894 -3.2 -7.2 Putative threonine efflux protein compare
Pf6N2E2_4511 -3.2 -15.3 glutamine synthetase family protein compare
Pf6N2E2_4515 -3.2 -8.1 Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) compare
Pf6N2E2_4516 -3.1 -8.0 Putrescine transport system permease protein PotH (TC 3.A.1.11.2) compare
Pf6N2E2_3782 -3.0 -5.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4512 -2.9 -14.1 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) conserved
Pf6N2E2_4825 -2.9 -9.6 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_71 -2.9 -6.9 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_3258 -2.9 -11.9 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_4513 -2.9 -10.8 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) compare
Pf6N2E2_3783 -2.8 -6.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_4048 -2.8 -6.1 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_3260 -2.8 -11.3 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_64 -2.7 -3.4 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_80 -2.7 -8.8 gamma-glutamylputrescine oxidase (EC 1.4.3.-) (from data) conserved
Pf6N2E2_2261 -2.6 -16.7 VacJ-like lipoprotein precursor compare
Pf6N2E2_4803 -2.6 -1.7 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_5899 -2.6 -8.2 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_2753 -2.6 -2.9 HtrA protease/chaperone protein compare
Pf6N2E2_66 -2.6 -10.0 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_4383 -2.6 -9.9 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) compare
Pf6N2E2_1694 -2.6 -2.5 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_4596 -2.5 -5.9 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_5157 -2.5 -10.9 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf6N2E2_3257 -2.5 -9.5 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_5177 -2.5 -9.5 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_5337 -2.4 -9.4 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_4564 -2.4 -9.2 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_4514 -2.4 -7.9 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) conserved
Pf6N2E2_3630 -2.3 -3.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4391 -2.3 -8.9 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf6N2E2_2073 -2.3 -6.6 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_77 -2.2 -4.4 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_63 -2.2 -3.8 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_2552 -2.2 -8.2 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_3300 -2.2 -3.4 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_2869 -2.1 -1.8 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_5545 -2.1 -3.0 Queuosine Biosynthesis QueE Radical SAM compare
Pf6N2E2_3869 -2.0 -8.0 Branched-chain amino acid transport protein AzlC compare
Pf6N2E2_3248 -2.0 -4.7 Probable transmembrane protein compare
Pf6N2E2_3655 -1.9 -12.7 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_4762 -1.9 -1.2 Biotin synthesis protein BioH compare
Pf6N2E2_3170 -1.8 -8.2 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_3656 -1.8 -5.5 Probable transcription regulator Mig-14 compare
Pf6N2E2_302 -1.8 -4.9 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3940 -1.8 -8.7 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4800 -1.8 -11.9 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) compare
Pf6N2E2_2318 -1.8 -10.3 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_6140 -1.7 -1.0 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_4351 -1.7 -8.7 Predicted signal transduction protein compare
Pf6N2E2_5176 -1.7 -1.9 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_2752 -1.6 -7.8 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_2320 -1.6 -5.0 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_1450 -1.6 -2.6 FIG00960438: hypothetical protein compare
Pf6N2E2_4801 -1.6 -11.5 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
Pf6N2E2_89 -1.6 -1.6 hypothetical protein compare
Pf6N2E2_4153 -1.6 -1.4 Sensory box histidine kinase compare
Pf6N2E2_4799 -1.6 -10.8 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
Pf6N2E2_5728 -1.5 -3.7 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_4390 -1.5 -8.0 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_2588 -1.5 -3.0 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_3665 -1.5 -1.6 serine/threonine protein kinase compare
Pf6N2E2_5175 -1.4 -2.6 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_2442 -1.4 -7.5 sensor histidine kinase/response regulator compare
Pf6N2E2_3251 -1.4 -8.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_5257 -1.4 -8.4 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_2003 -1.4 -2.8 hypothetical protein compare
Pf6N2E2_3521 -1.4 -5.7 Sensor histidine kinase/response regulator compare
Pf6N2E2_5943 -1.4 -1.7 hypothetical protein compare
Pf6N2E2_3807 -1.4 -5.4 Histidine utilization repressor compare
Pf6N2E2_5258 -1.4 -7.4 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_342 -1.4 -0.7 DNA-binding response regulator compare
Pf6N2E2_5160 -1.4 -0.9 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_5679 -1.3 -2.8 hypothetical protein compare
Pf6N2E2_2707 -1.3 -4.7 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_3252 -1.3 -4.4 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_895 -1.3 -2.3 Transcriptional regulator, HxlR family compare
Pf6N2E2_4517 -1.3 -1.5 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
Pf6N2E2_3899 -1.3 -4.0 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_2201 -1.3 -2.9 Transmembrane regulator protein PrtR compare
Pf6N2E2_2317 -1.3 -3.8 Putative analog of CcoH, COG3198 compare
Pf6N2E2_3033 -1.2 -2.0 hypothetical protein compare
Pf6N2E2_2938 -1.2 -4.5 Outer membrane lipoprotein compare
Pf6N2E2_2455 -1.2 -4.7 FIG00953957: hypothetical protein compare
Pf6N2E2_477 -1.2 -4.0 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf6N2E2_510 -1.2 -5.6 Predicted transcriptional regulator of the myo-inositol catabolic operon compare
Pf6N2E2_2465 -1.2 -5.2 Cys regulon transcriptional activator CysB compare
Pf6N2E2_1735 -1.2 -1.5 PhnB protein compare
Pf6N2E2_4584 -1.2 -2.1 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_3393 -1.2 -5.1 Queuosine Biosynthesis QueC ATPase compare
Pf6N2E2_5158 -1.2 -4.6 FIG00954153: hypothetical protein compare
Pf6N2E2_3727 -1.2 -1.7 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) compare
Pf6N2E2_4607 -1.1 -2.5 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Pf6N2E2_3876 -1.1 -3.0 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_291 -1.1 -2.6 ATP-dependent Clp protease adaptor protein ClpS compare
Pf6N2E2_2059 -1.1 -1.6 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_2447 -1.1 -5.9 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_288 -1.1 -1.1 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_3349 -1.1 -1.0 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_3384 -1.1 -2.8 Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG compare
Pf6N2E2_1652 -1.1 -1.6 Transcriptional regulator, TetR family compare
Pf6N2E2_5391 -1.1 -6.2 Predicted ATPase related to phosphate starvation-inducible protein PhoH compare
Pf6N2E2_82 -1.1 -1.5 hypothetical protein compare
Pf6N2E2_3039 -1.0 -4.9 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_3786 -1.0 -2.3 Twin-arginine translocation protein TatC compare
Pf6N2E2_5520 -1.0 -4.6 Sensory box histidine kinase compare
Pf6N2E2_2708 -1.0 -3.9 Lactam utilization protein LamB compare
Pf6N2E2_693 -1.0 -1.9 hypothetical protein compare
Pf6N2E2_2865 -1.0 -6.6 Gluconate utilization system Gnt-I transcriptional repressor compare
Pf6N2E2_2473 -1.0 -1.8 Major outer membrane lipoprotein I compare
Pf6N2E2_2586 -1.0 -0.6 Hpt domain protein compare
Pf6N2E2_3872 -1.0 -2.1 hypothetical protein compare
Pf6N2E2_4159 -1.0 -1.4 Cytochrome c4 compare
Pf6N2E2_2340 -1.0 -1.3 Transcriptional regulator, GntR family compare
Pf6N2E2_2706 -1.0 -2.9 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_5188 -1.0 -1.9 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf6N2E2_4057 -1.0 -0.9 lipoprotein, putative compare
Pf6N2E2_2080 -0.9 -2.0 hypothetical protein compare
Pf6N2E2_4025 -0.9 -1.6 hypothetical protein compare
Pf6N2E2_4817 -0.9 -7.2 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) compare
Pf6N2E2_1774 -0.9 -1.1 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_5133 -0.9 -1.8 FIG00953980: hypothetical protein compare
Pf6N2E2_5237 -0.9 -1.6 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_5093 -0.9 -6.3 ATP-dependent protease La (EC 3.4.21.53) Type II compare
Pf6N2E2_1490 -0.9 -1.3 hypothetical protein compare
Pf6N2E2_4824 -0.9 -2.9 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf6N2E2_3720 -0.9 -2.1 FIG027190: Putative transmembrane protein compare
Pf6N2E2_945 -0.9 -1.6 Transcriptional regulator, TetR family compare
Pf6N2E2_3533 -0.9 -3.0 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf6N2E2_953 -0.9 -1.1 FIG00958851: hypothetical protein compare
Pf6N2E2_2466 -0.9 -4.8 Universal stress protein family conserved
Pf6N2E2_3938 -0.9 -6.1 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_5012 -0.9 -3.3 FIG00954871: hypothetical protein compare
Pf6N2E2_5956 -0.9 -3.9 FIG004453: protein YceG like compare
Pf6N2E2_863 -0.9 -3.5 Transcriptional regulator, IclR family compare
Pf6N2E2_4307 -0.9 -1.7 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_2071 -0.9 -2.1 hypothetical protein compare
Pf6N2E2_4052 -0.9 -1.0 FIG00955481: hypothetical protein compare
Pf6N2E2_3834 -0.9 -3.3 Lipoprotein NlpD compare
Pf6N2E2_5972 -0.9 -2.0 hypothetical protein compare
Pf6N2E2_3844 -0.9 -1.3 hypothetical protein compare
Pf6N2E2_4172 -0.9 -2.3 Methionine ABC transporter ATP-binding protein compare
Pf6N2E2_2858 -0.9 -2.1 Phosphohydrolase (MutT/nudix family protein) compare
Pf6N2E2_4454 -0.8 -3.3 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_4963 -0.8 -1.5 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_2483 -0.8 -2.2 Deoxyribonuclease TatD compare
Pf6N2E2_5950 -0.8 -1.5 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_3666 -0.8 -3.5 InaA protein compare
Pf6N2E2_4601 -0.8 -0.8 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_2827 -0.8 -0.9 hypothetical protein compare
Pf6N2E2_4612 -0.8 -1.4 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_5300 -0.8 -4.3 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_1566 -0.8 -2.2 FIG00960770: hypothetical protein compare
Pf6N2E2_1113 -0.8 -1.6 Transcriptional regulator, TetR family compare
Pf6N2E2_5006 -0.8 -0.5 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_1779 -0.8 -1.4 Positive regulator of CheA protein activity (CheW) compare
Pf6N2E2_2388 -0.8 -2.1 Esterase/lipase/thioesterase family protein compare
Pf6N2E2_3323 -0.8 -2.4 hypothetical protein compare
Pf6N2E2_4773 -0.8 -0.7 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_1076 -0.8 -2.7 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) compare
Pf6N2E2_2124 -0.8 -1.1 Mg(2+) transport ATPase protein C compare
Pf6N2E2_3868 -0.8 -3.7 Transcriptional regulator, LysR family compare
Pf6N2E2_3191 -0.8 -2.3 Serine acetyltransferase (EC 2.3.1.30) compare
Pf6N2E2_958 -0.8 -1.8 hypothetical protein compare
Pf6N2E2_40 -0.8 -1.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5155 -0.8 -1.2 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_5027 -0.8 -4.6 AMP nucleosidase (EC 3.2.2.4) compare
Pf6N2E2_3524 -0.8 -2.4 hypothetical protein compare
Pf6N2E2_1287 -0.8 -1.5 Mobile element protein compare
Pf6N2E2_2527 -0.8 -1.1 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_3996 -0.8 -2.4 Transcriptional regulator, AraC family compare
Pf6N2E2_3325 -0.7 -0.7 ABC transporter, ATP-binding protein compare
Pf6N2E2_4889 -0.7 -3.3 Putative transport protein compare
Pf6N2E2_3024 -0.7 -1.7 Phage tail fibers compare
Pf6N2E2_451 -0.7 -1.6 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_4451 -0.7 -3.1 FIG139438: lipoprotein B compare
Pf6N2E2_1957 -0.7 -2.2 putative inner membrane protein compare
Pf6N2E2_1131 -0.7 -2.4 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_1043 -0.7 -1.2 Transcriptional regulator, IclR family compare
Pf6N2E2_292 -0.7 -2.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf6N2E2_2984 -0.7 -1.0 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_5522 -0.7 -1.7 FIG001943: hypothetical protein YajQ compare
Pf6N2E2_2103 -0.7 -2.3 hypothetical protein compare
Pf6N2E2_2207 -0.7 -2.6 cytochrome b(561) compare
Pf6N2E2_1611 -0.7 -2.3 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf6N2E2_5991 -0.7 -1.8 proteinase inhibitor compare
Pf6N2E2_3122 -0.7 -1.3 Chemotaxis signal transduction protein compare


Specific Phenotypes

For 11 genes in this experiment

For resistance P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine dihydrochloride in Pseudomonas fluorescens FW300-N2E2

For resistance P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine dihydrochloride across organisms