Experiment set14IT084 for Pseudomonas fluorescens FW300-N2E2

Compare to:

50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine dihydrochloride

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2258 -4.4 -29.7 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3253 -3.7 -7.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_5894 -3.6 -6.7 Putative threonine efflux protein compare
Pf6N2E2_3610 -3.5 -7.7 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3782 -3.4 -5.5 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_5899 -3.4 -8.8 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_5156 -3.4 -8.1 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_4509 -3.3 -16.2 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) conserved
Pf6N2E2_4511 -3.3 -16.0 glutamine synthetase family protein compare
Pf6N2E2_5177 -3.3 -10.1 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_2261 -3.3 -18.8 VacJ-like lipoprotein precursor compare
Pf6N2E2_3260 -3.2 -12.9 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_3258 -3.2 -12.7 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_5337 -3.2 -10.8 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_4825 -3.2 -10.2 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_5338 -3.1 -15.1 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_4597 -3.0 -8.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4515 -3.0 -9.0 Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) compare
Pf6N2E2_3842 -3.0 -5.5 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_4048 -3.0 -6.2 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_5339 -2.9 -10.5 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_3932 -2.9 -6.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_3257 -2.9 -10.5 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_3839 -2.9 -7.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_64 -2.9 -3.6 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_3783 -2.9 -6.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_4826 -2.8 -6.8 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_4564 -2.8 -10.6 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_4383 -2.8 -10.7 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) compare
Pf6N2E2_4512 -2.8 -14.8 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) conserved
Pf6N2E2_4516 -2.8 -9.4 Putrescine transport system permease protein PotH (TC 3.A.1.11.2) compare
Pf6N2E2_4513 -2.7 -11.3 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) compare
Pf6N2E2_4391 -2.7 -13.6 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf6N2E2_4803 -2.7 -1.8 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_71 -2.7 -7.2 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_3630 -2.7 -3.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_5157 -2.6 -13.3 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf6N2E2_3323 -2.6 -5.4 hypothetical protein compare
Pf6N2E2_4187 -2.6 -7.0 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3665 -2.6 -2.1 serine/threonine protein kinase compare
Pf6N2E2_4800 -2.6 -15.0 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) compare
Pf6N2E2_5545 -2.6 -2.9 Queuosine Biosynthesis QueE Radical SAM compare
Pf6N2E2_2752 -2.5 -10.3 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_80 -2.4 -9.6 gamma-glutamylputrescine oxidase (EC 1.4.3.-) (from data) conserved
Pf6N2E2_2552 -2.4 -10.3 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_3248 -2.3 -5.6 Probable transmembrane protein compare
Pf6N2E2_66 -2.3 -8.8 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_4514 -2.3 -9.3 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) conserved
Pf6N2E2_4801 -2.3 -15.2 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
Pf6N2E2_4596 -2.3 -6.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4799 -2.3 -14.3 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
Pf6N2E2_77 -2.2 -4.7 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_3940 -2.1 -9.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3521 -2.1 -7.8 Sensor histidine kinase/response regulator compare
Pf6N2E2_477 -2.1 -5.7 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf6N2E2_5728 -2.0 -4.3 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_302 -2.0 -5.3 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_2442 -1.9 -9.3 sensor histidine kinase/response regulator compare
Pf6N2E2_2466 -1.9 -8.5 Universal stress protein family conserved
Pf6N2E2_2073 -1.9 -6.5 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_2753 -1.8 -3.0 HtrA protease/chaperone protein compare
Pf6N2E2_4584 -1.8 -3.1 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_4607 -1.8 -3.5 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Pf6N2E2_3300 -1.8 -3.1 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_1694 -1.7 -2.1 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_291 -1.7 -3.9 ATP-dependent Clp protease adaptor protein ClpS compare
Pf6N2E2_3869 -1.7 -7.9 Branched-chain amino acid transport protein AzlC compare
Pf6N2E2_3807 -1.7 -6.3 Histidine utilization repressor compare
Pf6N2E2_63 -1.6 -3.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_3251 -1.6 -10.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_2318 -1.6 -10.2 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_3170 -1.6 -6.8 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_5012 -1.6 -5.0 FIG00954871: hypothetical protein compare
Pf6N2E2_3656 -1.6 -4.9 Probable transcription regulator Mig-14 compare
Pf6N2E2_2317 -1.6 -4.2 Putative analog of CcoH, COG3198 compare
Pf6N2E2_3655 -1.6 -12.3 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_4390 -1.5 -8.1 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_2967 -1.5 -1.6 Cold shock protein CspA compare
Pf6N2E2_4594 -1.5 -2.2 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Pf6N2E2_40 -1.5 -3.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5252 -1.5 -1.3 FIG00956396: hypothetical protein compare
Pf6N2E2_3899 -1.5 -4.7 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_510 -1.5 -6.8 Predicted transcriptional regulator of the myo-inositol catabolic operon compare
Pf6N2E2_2320 -1.5 -5.2 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_658 -1.5 -8.1 sensor histidine kinase compare
Pf6N2E2_3085 -1.4 -2.1 FIG00954614: hypothetical protein compare
Pf6N2E2_5176 -1.4 -2.9 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_3778 -1.4 -2.6 FIG00954300: hypothetical protein compare
Pf6N2E2_895 -1.4 -2.5 Transcriptional regulator, HxlR family compare
Pf6N2E2_156 -1.4 -1.2 Carbon storage regulator compare
Pf6N2E2_5523 -1.4 -3.5 Small-conductance mechanosensitive channel compare
Pf6N2E2_4159 -1.4 -1.7 Cytochrome c4 compare
Pf6N2E2_3338 -1.4 -1.2 1-phosphofructokinase (EC 2.7.1.56) compare
Pf6N2E2_4811 -1.4 -4.2 DnaJ-like protein DjlA compare
Pf6N2E2_3393 -1.3 -5.9 Queuosine Biosynthesis QueC ATPase compare
Pf6N2E2_3252 -1.3 -4.6 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3666 -1.3 -5.2 InaA protein compare
Pf6N2E2_3876 -1.3 -3.4 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_5956 -1.3 -5.4 FIG004453: protein YceG like compare
Pf6N2E2_2865 -1.3 -8.2 Gluconate utilization system Gnt-I transcriptional repressor compare
Pf6N2E2_3786 -1.3 -3.7 Twin-arginine translocation protein TatC compare
Pf6N2E2_4517 -1.3 -1.7 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
Pf6N2E2_2938 -1.3 -4.8 Outer membrane lipoprotein compare
Pf6N2E2_5258 -1.2 -7.1 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_4441 -1.2 -5.5 Homoserine/homoserine lactone efflux protein compare
Pf6N2E2_5571 -1.2 -1.9 hypothetical protein compare
Pf6N2E2_4454 -1.2 -4.4 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_5093 -1.2 -7.8 ATP-dependent protease La (EC 3.4.21.53) Type II compare
Pf6N2E2_3834 -1.2 -3.9 Lipoprotein NlpD compare
Pf6N2E2_3617 -1.2 -3.3 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_2588 -1.2 -2.5 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_54 -1.2 -3.6 Transcriptional regulator, TetR family compare
Pf6N2E2_4817 -1.2 -8.8 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) compare
Pf6N2E2_4751 -1.1 -2.1 response regulator compare
Pf6N2E2_2549 -1.1 -1.5 hypothetical protein compare
Pf6N2E2_5158 -1.1 -4.4 FIG00954153: hypothetical protein compare
Pf6N2E2_2675 -1.1 -0.6 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_37 -1.1 -1.4 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_5257 -1.1 -7.6 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_4057 -1.1 -1.0 lipoprotein, putative compare
Pf6N2E2_3095 -1.1 -1.6 hypothetical protein compare
Pf6N2E2_1534 -1.1 -1.3 Probable transmembrane protein compare
Pf6N2E2_4824 -1.1 -3.9 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf6N2E2_5841 -1.1 -0.5 GlcG protein compare
Pf6N2E2_5746 -1.1 -1.8 Cobalamin synthase compare
Pf6N2E2_5300 -1.1 -5.5 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_292 -1.1 -2.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf6N2E2_5155 -1.0 -1.3 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_1774 -1.0 -1.2 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_664 -1.0 -1.3 Acetoin catabolism protein X compare
Pf6N2E2_290 -1.0 -2.3 Cold shock protein CspD compare
Pf6N2E2_2373 -1.0 -3.3 Type III secretion thermoregulatory protein (LcrF,VirF,transcription regulation of virulence plasmid) compare
Pf6N2E2_2309 -1.0 -1.8 hypothetical protein compare
Pf6N2E2_3505 -1.0 -0.8 Translation initiation factor SUI1-related protein compare
Pf6N2E2_3785 -1.0 -3.0 Twin-arginine translocation protein TatB compare
Pf6N2E2_882 -1.0 -2.1 FIG00961517: hypothetical protein compare
Pf6N2E2_5020 -1.0 -2.5 FIG00955339: hypothetical protein compare
Pf6N2E2_5391 -1.0 -6.3 Predicted ATPase related to phosphate starvation-inducible protein PhoH compare
Pf6N2E2_2455 -1.0 -4.2 FIG00953957: hypothetical protein compare
Pf6N2E2_2732 -1.0 -3.7 Transcriptional regulator, LysR family compare
Pf6N2E2_4585 -1.0 -5.2 Cell division protein FtsX compare
Pf6N2E2_1450 -1.0 -1.8 FIG00960438: hypothetical protein compare
Pf6N2E2_2316 -1.0 -6.5 Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation compare
Pf6N2E2_1298 -1.0 -3.0 Xanthine transporter,putative compare
Pf6N2E2_164 -1.0 -4.5 Ribose operon repressor compare
Pf6N2E2_5991 -1.0 -3.6 proteinase inhibitor compare
Pf6N2E2_5679 -1.0 -2.2 hypothetical protein compare
Pf6N2E2_2465 -1.0 -5.8 Cys regulon transcriptional activator CysB compare
Pf6N2E2_1352 -1.0 -2.3 Cation transport ATPase compare
Pf6N2E2_3539 -1.0 -1.7 FIG00955840: hypothetical protein compare
Pf6N2E2_2340 -1.0 -1.6 Transcriptional regulator, GntR family compare
Pf6N2E2_3938 -0.9 -6.4 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_3720 -0.9 -2.3 FIG027190: Putative transmembrane protein compare
Pf6N2E2_987 -0.9 -1.5 hypothetical protein compare
Pf6N2E2_451 -0.9 -2.0 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_4351 -0.9 -5.7 Predicted signal transduction protein compare
Pf6N2E2_3667 -0.9 -1.2 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_2587 -0.9 -5.2 Serine phosphatase RsbU, regulator of sigma subunit compare
Pf6N2E2_2835 -0.9 -1.9 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_962 -0.9 -1.7 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_3524 -0.9 -2.9 hypothetical protein compare
Pf6N2E2_1859 -0.9 -1.9 hypothetical protein compare
Pf6N2E2_922 -0.9 -1.1 FIG00794167: hypothetical protein compare
Pf6N2E2_3875 -0.9 -1.3 FIG00953324: hypothetical protein compare
Pf6N2E2_2124 -0.9 -1.3 Mg(2+) transport ATPase protein C compare
Pf6N2E2_4802 -0.9 -3.6 Thiosulfate sulfurtransferase GlpE (EC 2.8.1.1) compare
Pf6N2E2_5869 -0.9 -2.0 Helicase subunit of the DNA excision repair complex compare
Pf6N2E2_5666 -0.9 -3.9 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_5645 -0.9 -2.7 Transcriptional regulator, LysR family compare
Pf6N2E2_2586 -0.9 -0.8 Hpt domain protein compare
Pf6N2E2_3349 -0.9 -0.6 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_4271 -0.9 -4.4 FIG00956226: hypothetical protein compare
Pf6N2E2_2413 -0.9 -1.6 FIG074102: hypothetical protein compare
Pf6N2E2_3201 -0.9 -2.1 Transcriptional regulator, MerR family compare
Pf6N2E2_4987 -0.9 -1.1 MaoC-like domain protein compare
Pf6N2E2_4762 -0.9 -0.9 Biotin synthesis protein BioH compare
Pf6N2E2_3190 -0.9 -2.8 Iron-sulfur cluster regulator IscR compare
Pf6N2E2_817 -0.9 -2.2 Protein-glutamate methylesterase (EC 3.1.1.61) compare
Pf6N2E2_2479 -0.9 -2.0 Transcription elongation factor GreB compare
Pf6N2E2_146 -0.9 -1.2 Transcriptional regulator, MarR family compare
Pf6N2E2_1735 -0.9 -1.3 PhnB protein compare
Pf6N2E2_5554 -0.9 -3.8 FIG023103: Predicted transmembrane protein compare
Pf6N2E2_5520 -0.9 -4.1 Sensory box histidine kinase compare
Pf6N2E2_4999 -0.9 -3.0 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_4397 -0.9 -2.0 Xanthine phosphoribosyltransferase (EC 2.4.2.22) compare
Pf6N2E2_2074 -0.9 -0.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_603 -0.9 -2.2 FIG00953934: hypothetical protein compare
Pf6N2E2_5027 -0.9 -5.2 AMP nucleosidase (EC 3.2.2.4) compare
Pf6N2E2_4612 -0.9 -1.7 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_4307 -0.8 -1.8 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_1685 -0.8 -3.1 Vitamin B12 ABC transporter, B12-binding component BtuF compare
Pf6N2E2_3841 -0.8 -1.1 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3384 -0.8 -2.0 Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG compare
Pf6N2E2_2941 -0.8 -2.9 Esterase A compare
Pf6N2E2_1463 -0.8 -1.4 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf6N2E2_3328 -0.8 -1.5 transcriptional regulator compare
Pf6N2E2_3708 -0.8 -3.9 predicted biotin regulatory protein BioR (GntR family) compare
Pf6N2E2_2390 -0.8 -2.2 FIG00959101: hypothetical protein compare
Pf6N2E2_6081 -0.8 -1.4 Transcriptional regulator, TetR family, in cluster with 2-hydroxychromene-2-carboxylate isomerase family protein, glutathione-dependent compare
Pf6N2E2_3191 -0.8 -3.0 Serine acetyltransferase (EC 2.3.1.30) compare


Specific Phenotypes

For 18 genes in this experiment

For resistance P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine dihydrochloride in Pseudomonas fluorescens FW300-N2E2

For resistance P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine dihydrochloride across organisms