Experiment set14IT084 for Pseudomonas fluorescens FW300-N2E2

Compare to:

50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine dihydrochloride

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_5150 +2.7 15.4 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_6164 +2.5 2.0 tRNA-Val-TAC compare
Pf6N2E2_2979 +2.2 9.1 Histone acetyltransferase HPA2 and related acetyltransferases conserved
Pf6N2E2_2597 +2.1 16.8 Flagellar regulatory protein FleQ compare
Pf6N2E2_5346 +1.9 2.7 rRNA small subunit methyltransferase I compare
Pf6N2E2_3871 +1.9 13.9 FIG00553872: hypothetical protein compare
Pf6N2E2_2536 +1.8 2.0 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_2508 +1.8 7.4 hypothetical protein compare
Pf6N2E2_2406 +1.8 10.9 Periplasmic binding protein compare
Pf6N2E2_2518 +1.7 2.1 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_4810 +1.6 8.3 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_5229 +1.6 8.1 Transcriptional regulator, MerR family, associated with photolyase conserved
Pf6N2E2_5677 +1.5 0.8 Carbon storage regulator compare
Pf6N2E2_2178 +1.5 8.5 FIG00960144: hypothetical protein compare
Pf6N2E2_5936 +1.5 1.6 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) compare
Pf6N2E2_2580 +1.5 6.0 Flagellar biosynthesis protein FliP compare
Pf6N2E2_342 +1.5 1.1 DNA-binding response regulator compare
Pf6N2E2_464 +1.4 2.0 Sensory histidine kinase QseC compare
Pf6N2E2_445 +1.4 11.1 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_2507 +1.4 7.8 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_2438 +1.4 2.0 hypothetical protein compare
Pf6N2E2_2175 +1.4 5.0 Transcriptional regulator, RpiR family compare
Pf6N2E2_5671 +1.4 8.3 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_2593 +1.3 9.0 Flagellar M-ring protein FliF compare
Pf6N2E2_5774 +1.3 5.2 FIG00954549: hypothetical protein compare
Pf6N2E2_234 +1.3 2.4 FIG00454312: hypothetical protein compare
Pf6N2E2_4418 +1.3 1.2 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_2592 +1.3 7.2 Flagellar motor switch protein FliG compare
Pf6N2E2_4435 +1.3 9.1 Regulator of sigma D compare
Pf6N2E2_4362 +1.3 2.0 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_2590 +1.3 9.5 Flagellum-specific ATP synthase FliI compare
Pf6N2E2_5405 +1.3 6.4 ABC transporter for D-Alanine, ATPase component (from data) compare
Pf6N2E2_3268 +1.3 9.0 Ribosome hibernation protein YhbH compare
Pf6N2E2_1027 +1.2 2.3 Cysteine dioxygenase (EC 1.13.11.20) compare
Pf6N2E2_2591 +1.2 5.3 Flagellar assembly protein FliH compare
Pf6N2E2_2628 +1.2 5.9 Flagellar basal-body rod protein FlgF compare
Pf6N2E2_5403 +1.2 8.7 ABC transporter for D-Alanine, permease component 2 (from data) compare
Pf6N2E2_180 +1.2 2.3 Transcriptional regulator, MerR family compare
Pf6N2E2_463 +1.2 5.8 Transcriptional regulatory protein RstA compare
Pf6N2E2_5404 +1.2 7.8 ABC transporter for D-Alanine, permease component 1 (from data) compare
Pf6N2E2_2583 +1.2 8.0 Flagellar motor switch protein FliM compare
Pf6N2E2_1215 +1.2 2.6 probable membrane protein YPO2362 compare
Pf6N2E2_3868 +1.2 6.6 Transcriptional regulator, LysR family compare
Pf6N2E2_3696 +1.2 0.8 hypothetical protein compare
Pf6N2E2_5695 +1.2 7.9 Flagellar basal-body rod protein FlgC compare
Pf6N2E2_2063 +1.1 2.3 Predicted cobalt transporter CbtA compare
Pf6N2E2_3138 +1.1 2.4 YaeQ protein compare
Pf6N2E2_5862 +1.1 2.6 Lipoprotein, putative compare
Pf6N2E2_2526 +1.1 6.4 Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase compare
Pf6N2E2_4591 +1.1 3.2 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) compare
Pf6N2E2_2594 +1.1 8.2 Flagellar hook-basal body complex protein FliE compare
Pf6N2E2_2577 +1.1 8.2 Flagellar biosynthesis protein FlhB compare
Pf6N2E2_1141 +1.1 1.7 Lipid-A-disaccharide synthase (EC 2.4.1.182) compare
Pf6N2E2_5230 +1.1 6.4 COG1683: Uncharacterized conserved protein / FIG143828: Hypothetical protein YbgA compare
Pf6N2E2_2152 +1.0 1.9 hypothetical protein compare
Pf6N2E2_2578 +1.0 3.7 Flagellar biosynthesis protein FliR compare
Pf6N2E2_5694 +1.0 5.5 Flagellar basal-body rod protein FlgB compare
Pf6N2E2_5697 +1.0 8.7 Flagellar hook protein FlgE compare
Pf6N2E2_1677 +1.0 4.6 Chalcone synthase (EC 2.3.1.74) compare
Pf6N2E2_1312 +1.0 2.1 4-hydroxyphenylacetate symporter, major facilitator superfamily (MFS) compare
Pf6N2E2_2576 +1.0 7.5 Flagellar biosynthesis protein FlhA compare
Pf6N2E2_2579 +1.0 4.8 Flagellar biosynthesis protein FliQ compare
Pf6N2E2_5025 +1.0 9.0 Sensor histidine kinase compare
Pf6N2E2_2503 +1.0 1.0 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_1157 +1.0 2.3 hypothetical protein possibly connected to lactam utilization and allophanate hydrolase compare
Pf6N2E2_3096 +1.0 0.8 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_813 +1.0 2.1 Response regulator compare
Pf6N2E2_2605 +0.9 9.1 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_3634 +0.9 2.3 Transporter compare
Pf6N2E2_1391 +0.9 1.9 DNA-binding response regulator, LuxR family compare
Pf6N2E2_659 +0.9 1.4 Transcriptional regulatory protein ompR compare
Pf6N2E2_1675 +0.9 6.4 Lipid carrier protein or keto acyl-CoA thiolase Ltp3 (EC 2.3.1.16) compare
Pf6N2E2_349 +0.9 2.1 hypothetical protein compare
Pf6N2E2_309 +0.9 1.6 FIG00957702: hypothetical protein compare
Pf6N2E2_2509 +0.9 2.6 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_4181 +0.9 0.9 Organic hydroperoxide resistance protein compare
Pf6N2E2_5771 +0.9 6.1 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_923 +0.9 1.7 Haloacid dehalogenase, type II (EC 3.8.1.2) compare
Pf6N2E2_5494 +0.9 5.1 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_2426 +0.9 6.1 Similar to ribosomal large subunit pseudouridine synthase A compare
Pf6N2E2_698 +0.9 1.7 Heme d1 biosynthesis protein NirH compare
Pf6N2E2_1674 +0.9 6.4 Hydroxymethylglutaryl-CoA synthase (EC 2.3.3.10) compare
Pf6N2E2_5873 +0.9 4.8 FIG00953467: hypothetical protein compare
Pf6N2E2_4982 +0.9 2.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) compare
Pf6N2E2_2573 +0.9 5.9 RNA polymerase sigma factor for flagellar operon compare
Pf6N2E2_2563 +0.9 7.3 FIG00953562: hypothetical protein compare
Pf6N2E2_5086 +0.9 1.2 hypothetical protein compare
Pf6N2E2_5396 +0.9 6.1 YheO-like PAS domain compare
Pf6N2E2_2602 +0.9 6.0 Flagellin protein FlaA compare
Pf6N2E2_5766 +0.9 0.5 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_5567 +0.9 1.6 Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4) compare
Pf6N2E2_5462 +0.9 2.5 Signal transduction histidine kinase compare
Pf6N2E2_2561 +0.9 1.4 FIG00955434: hypothetical protein compare
Pf6N2E2_5013 +0.9 2.1 Putative membrane protein compare
Pf6N2E2_2585 +0.9 6.5 Flagellar hook-length control protein FliK compare
Pf6N2E2_5452 +0.9 1.8 hypothetical protein compare
Pf6N2E2_5625 +0.9 3.8 COG0613, Predicted metal-dependent phosphoesterases (PHP family) compare
Pf6N2E2_1626 +0.9 3.6 Putative ATP-binding component of a transport system compare
Pf6N2E2_5785 +0.9 1.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2452 +0.9 4.1 Spermidine synthase (EC 2.5.1.16) compare
Pf6N2E2_2622 +0.8 6.6 Flagellar hook-associated protein FlgL compare
Pf6N2E2_4797 +0.8 0.5 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_5705 +0.8 1.3 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_4710 +0.8 1.9 hypothetical protein compare
Pf6N2E2_2674 +0.8 1.5 FIG00953856: hypothetical protein compare
Pf6N2E2_5402 +0.8 4.9 ABC transporter for D-Alanine, periplasmic substrate-binding component (from data) compare
Pf6N2E2_3624 +0.8 5.4 Flagellar motor rotation protein MotB compare
Pf6N2E2_4478 +0.8 4.4 FIG019278: hypothetical protein compare
Pf6N2E2_2626 +0.8 5.7 Flagellar L-ring protein FlgH compare
Pf6N2E2_5874 +0.8 6.5 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins compare
Pf6N2E2_1082 +0.8 2.0 CopG protein compare
Pf6N2E2_2623 +0.8 6.7 Flagellar hook-associated protein FlgK compare
Pf6N2E2_5898 +0.8 2.5 Integral membrane protein compare
Pf6N2E2_1124 +0.8 1.6 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2441 +0.8 3.6 putative ATP/GTP-binding protein compare
Pf6N2E2_942 +0.8 1.0 Mll6465 protein compare
Pf6N2E2_3569 +0.8 1.5 hypothetical protein compare
Pf6N2E2_3885 +0.8 2.4 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_663 +0.8 1.9 Transcriptional activator of acetoin dehydrogenase operon AcoR compare
Pf6N2E2_1549 +0.8 2.7 Transcriptional regulator, LysR family compare
Pf6N2E2_3761 +0.8 5.8 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_5340 +0.8 2.7 Stringent starvation protein A compare
Pf6N2E2_2177 +0.8 3.9 Glutamine synthetase (EC 6.3.1.2), putative compare
Pf6N2E2_5691 +0.8 5.6 Flagellar basal-body P-ring formation protein FlgA compare
Pf6N2E2_1128 +0.8 1.5 Two-component response regulator compare
Pf6N2E2_2710 +0.8 4.0 FIG00953701: hypothetical protein compare
Pf6N2E2_4624 +0.8 0.5 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_2127 +0.8 4.4 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_89 +0.8 1.2 hypothetical protein compare
Pf6N2E2_5872 +0.8 4.9 Sensor histidine kinase/response regulator compare
Pf6N2E2_1269 +0.8 2.4 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_4527 +0.8 2.5 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_1116 +0.8 1.1 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_1978 +0.8 2.1 DNA topoisomerase III (EC 5.99.1.2) in PFGI-1-like cluster compare
Pf6N2E2_3060 +0.8 1.8 Outer membrane protein H precursor compare
Pf6N2E2_3625 +0.7 5.8 Flagellar motor rotation protein MotA compare
Pf6N2E2_955 +0.7 1.6 FIG00953508: hypothetical protein compare
Pf6N2E2_5137 +0.7 2.4 FIG00956650: hypothetical protein compare
Pf6N2E2_1676 +0.7 1.9 conserved protein associated with acetyl-CoA C-acyltransferase compare
Pf6N2E2_4993 +0.7 1.4 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_3493 +0.7 3.0 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_1149 +0.7 3.7 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) compare
Pf6N2E2_2471 +0.7 5.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_2599 +0.7 4.2 Flagellar biosynthesis protein FliS compare
Pf6N2E2_2606 +0.7 4.6 hypothetical protein compare
Pf6N2E2_88 +0.7 0.9 hypothetical protein compare
Pf6N2E2_16 +0.7 1.5 hypothetical protein compare
Pf6N2E2_2252 +0.7 1.9 NreA-like protein compare
Pf6N2E2_672 +0.7 1.1 ABC-type polar amino acid transport system, ATPase component compare
Pf6N2E2_434 +0.7 1.3 hypothetical protein compare
Pf6N2E2_546 +0.7 0.9 FIG00966904: hypothetical protein compare
Pf6N2E2_1376 +0.7 2.6 probable transmembrane protein compare
Pf6N2E2_2912 +0.7 0.9 FIG00954094: hypothetical protein compare
Pf6N2E2_460 +0.7 1.6 Glycerate kinase (EC 2.7.1.31) compare
Pf6N2E2_1424 +0.7 1.2 transcriptional regulator, TetR family compare
Pf6N2E2_367 +0.7 1.3 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_2825 +0.7 1.9 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_3870 +0.7 1.2 hypothetical protein compare
Pf6N2E2_5773 +0.7 2.8 Transcriptional regulator, Cro/CI family compare
Pf6N2E2_4136 +0.7 2.4 Aromatic ring-cleaving dioxygenase compare
Pf6N2E2_1441 +0.7 1.2 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_5510 +0.7 1.6 FIG00955324: hypothetical protein compare
Pf6N2E2_4394 +0.7 1.4 Putrescine utilization regulator compare
Pf6N2E2_4305 +0.7 0.6 FIG00959590: hypothetical protein compare
Pf6N2E2_1162 +0.7 0.7 Transmembrane amino acid efflux protein compare
Pf6N2E2_1678 +0.7 4.8 Major facilitator family transporter compare
Pf6N2E2_1718 +0.7 1.0 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) compare
Pf6N2E2_4928 +0.7 0.6 Permeases of the major facilitator superfamily compare
Pf6N2E2_734 +0.7 1.3 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_1281 +0.7 1.5 ATPase involved in DNA repair compare
Pf6N2E2_1099 +0.7 1.5 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_3742 +0.7 2.6 General secretion pathway protein H compare
Pf6N2E2_4074 +0.7 5.3 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_2913 +0.7 4.1 Transcriptional regulator PobR, AraC family compare
Pf6N2E2_2589 +0.7 2.1 Flagellar protein FliJ compare
Pf6N2E2_2699 +0.7 4.6 Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO compare
Pf6N2E2_971 +0.7 0.6 hypothetical protein compare
Pf6N2E2_2627 +0.7 3.2 Flagellar basal-body rod protein FlgG compare
Pf6N2E2_2596 +0.7 4.9 Flagellar sensor histidine kinase FleS compare
Pf6N2E2_5767 +0.7 3.2 Sodium-dependent transporter compare
Pf6N2E2_2625 +0.7 2.9 Flagellar P-ring protein FlgI compare
Pf6N2E2_4479 +0.7 1.0 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_5534 +0.7 0.9 FIG000859: hypothetical protein YebC compare
Pf6N2E2_1656 +0.7 0.8 hypothetical protein compare
Pf6N2E2_3144 +0.7 5.6 Thiol:disulfide interchange protein DsbC compare
Pf6N2E2_2790 +0.7 1.3 Helix-turn-helix motif compare
Pf6N2E2_2582 +0.7 1.9 Flagellar motor switch protein FliN compare
Pf6N2E2_21 +0.7 1.6 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis compare
Pf6N2E2_2600 +0.7 5.1 Flagellar hook-associated protein FliD compare
Pf6N2E2_6130 +0.7 1.8 5S RNA compare
Pf6N2E2_4152 +0.7 2.0 alginate biosynthesis transcriptional regulatory protein AlgB compare
Pf6N2E2_1078 +0.6 4.8 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) compare
Pf6N2E2_613 +0.6 0.7 lipoprotein, putative compare
Pf6N2E2_5664 +0.6 2.7 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
Pf6N2E2_2842 +0.6 1.5 hypothetical protein compare
Pf6N2E2_2999 +0.6 1.1 probable tail fiber assembly protein compare
Pf6N2E2_69 +0.6 4.1 Probable type IV pilus assembly FimV-related transmembrane protein compare
Pf6N2E2_4162 +0.6 0.8 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_1647 +0.6 2.3 Maltose/maltodextrin ABC transporter, permease protein MalF compare
Pf6N2E2_5316 +0.6 0.9 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare


Specific Phenotypes

For 18 genes in this experiment

For resistance P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine dihydrochloride in Pseudomonas fluorescens FW300-N2E2

For resistance P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine dihydrochloride across organisms