Experiment set14IT083 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Glucose (C) and L-Glutamine (N); with TAPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS14050 -4.4 -3.0 hypothetical protein compare
PFLU_RS28695 -4.4 -8.9 phosphoglycerate dehydrogenase compare
PFLU_RS23065 -4.3 -5.1 phosphate acyltransferase PlsX compare
PFLU_RS25640 -3.5 -12.3 ketol-acid reductoisomerase compare
PFLU_RS20575 -3.4 -6.8 3-isopropylmalate dehydratase small subunit compare
PFLU_RS28535 -3.3 -15.8 dihydroxy-acid dehydratase compare
PFLU_RS24765 -3.3 -19.5 2-isopropylmalate synthase compare
PFLU_RS20580 -3.3 -11.4 3-isopropylmalate dehydratase large subunit compare
PFLU_RS20565 -3.2 -13.8 3-isopropylmalate dehydrogenase compare
PFLU_RS20510 -3.1 -14.3 O-succinylhomoserine sulfhydrylase compare
PFLU_RS20515 -3.1 -3.0 amidophosphoribosyltransferase compare
PFLU_RS22470 -3.0 -3.3 hypothetical protein compare
PFLU_RS01605 -3.0 -7.4 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS01900 -3.0 -7.6 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS02490 -3.0 -13.3 phosphoserine phosphatase SerB compare
PFLU_RS06320 -3.0 -3.5 OmpH family outer membrane protein compare
PFLU_RS23070 -2.9 -1.6 50S ribosomal protein L32 compare
PFLU_RS12915 -2.8 -4.2 methyltransferase domain-containing protein compare
PFLU_RS28390 -2.7 -10.9 methionine biosynthesis protein MetW compare
PFLU_RS25750 -2.7 -2.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS28385 -2.6 -12.9 homoserine O-acetyltransferase compare
PFLU_RS01620 -2.6 -7.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS20540 -2.6 -10.5 phosphoribosylanthranilate isomerase compare
PFLU_RS04470 -2.5 -11.2 histidinol dehydrogenase compare
PFLU_RS29065 -2.5 -1.4 amino acid ABC transporter ATP-binding protein compare
PFLU_RS24205 -2.5 -1.7 DNA binding protein compare
PFLU_RS04465 -2.5 -8.7 ATP phosphoribosyltransferase compare
PFLU_RS00175 -2.5 -8.6 tryptophan synthase subunit alpha compare
PFLU_RS00180 -2.5 -7.6 tryptophan synthase subunit beta compare
PFLU_RS01995 -2.4 -10.9 malate dehydrogenase compare
PFLU_RS28655 -2.4 -11.6 HAD family hydrolase compare
PFLU_RS29515 -2.4 -10.4 RidA family protein compare
PFLU_RS13120 -2.4 -2.0 hypothetical protein compare
PFLU_RS21360 -2.3 -2.0 MarR family transcriptional regulator compare
PFLU_RS09055 -2.3 -3.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS02980 -2.2 -2.2 precorrin-8X methylmutase compare
PFLU_RS13365 -2.2 -2.3 hypothetical protein compare
PFLU_RS12445 -2.2 -11.7 TonB-dependent siderophore receptor compare
PFLU_RS27370 -2.2 -9.7 anthranilate phosphoribosyltransferase compare
PFLU_RS22030 -2.2 -3.1 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
PFLU_RS02590 -2.1 -8.6 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS28165 -2.1 -11.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS31830 -2.1 -1.6 hypothetical protein compare
PFLU_RS08410 -2.1 -7.4 HTH-type transcriptional regulator CysB compare
PFLU_RS10430 -2.0 -3.7 peptidase compare
PFLU_RS05690 -2.0 -1.4 Grx4 family monothiol glutaredoxin compare
PFLU_RS03585 -2.0 -2.9 hypothetical protein compare
PFLU_RS27650 -2.0 -7.6 biotin synthase BioB compare
PFLU_RS13350 -2.0 -1.6 ParD-like family protein compare
PFLU_RS03575 -2.0 -2.1 hypothetical protein compare
PFLU_RS01610 -1.9 -9.4 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS01625 -1.9 -2.2 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS22740 -1.9 -2.9 phosphoadenylyl-sulfate reductase compare
PFLU_RS27365 -1.9 -8.4 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS14195 -1.8 -2.7 hypothetical protein compare
PFLU_RS22070 -1.8 -2.4 phosphoribosylglycinamide formyltransferase compare
PFLU_RS02990 -1.8 -4.3 precorrin-3B C(17)-methyltransferase compare
PFLU_RS18530 -1.8 -2.1 DNA translocase FtsK compare
PFLU_RS14320 -1.8 -1.5 DUF2946 domain-containing protein compare
PFLU_RS07245 -1.8 -6.7 DegQ family serine endoprotease compare
PFLU_RS25955 -1.8 -1.7 hypothetical protein compare
PFLU_RS21995 -1.7 -2.9 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFLU_RS11525 -1.7 -3.4 GntR family transcriptional regulator compare
PFLU_RS16310 -1.7 -2.2 hypothetical protein compare
PFLU_RS02455 -1.7 -2.1 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS01955 -1.7 -6.2 DUF971 domain-containing protein compare
PFLU_RS25645 -1.7 -2.9 acetolactate synthase small subunit compare
PFLU_RS01315 -1.6 -3.0 Hsp33 family molecular chaperone HslO compare
PFLU_RS23920 -1.6 -1.5 septation protein A compare
PFLU_RS11980 -1.6 -4.5 precorrin-6A synthase (deacetylating) compare
PFLU_RS27645 -1.6 -7.1 8-amino-7-oxononanoate synthase compare
PFLU_RS12975 -1.6 -3.7 DUF934 domain-containing protein compare
PFLU_RS12945 -1.6 -3.6 hypothetical protein compare
PFLU_RS02670 -1.6 -2.7 hypothetical protein compare
PFLU_RS02975 -1.6 -6.0 precorrin-3B synthase compare
PFLU_RS13885 -1.5 -2.2 hypothetical protein compare
PFLU_RS25735 -1.5 -4.1 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS19850 -1.5 -3.6 OmpA family protein compare
PFLU_RS17750 -1.5 -2.4 pirin family protein compare
PFLU_RS14300 -1.5 -2.2 response regulator transcription factor compare
PFLU_RS30505 -1.5 -3.7 hypothetical protein compare
PFLU_RS13540 -1.5 -2.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS01965 -1.5 -1.6 ATP-dependent protease subunit HslV compare
PFLU_RS00195 -1.5 -1.5 dodecin domain-containing protein compare
PFLU_RS26640 -1.5 -7.1 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS22105 -1.5 -3.5 cysteine synthase CysM compare
PFLU_RS00870 -1.4 -1.4 hypothetical protein compare
PFLU_RS12980 -1.4 -6.2 nitrite/sulfite reductase compare
PFLU_RS00310 -1.4 -1.2 twin transmembrane helix small protein compare
PFLU_RS15310 -1.4 -2.2 YgdI/YgdR family lipoprotein compare
PFLU_RS18505 -1.4 -6.2 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS12145 -1.4 -1.5 nuclear transport factor 2 family protein compare
PFLU_RS31425 -1.4 -1.5 hypothetical protein compare
PFLU_RS28195 -1.4 -7.1 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS19160 -1.4 -6.3 endopeptidase La compare
PFLU_RS31530 -1.4 -1.1 transposase compare
PFLU_RS01670 -1.4 -5.5 protein-export chaperone SecB compare
PFLU_RS18735 -1.4 -1.0 hypothetical protein compare
PFLU_RS01485 -1.4 -8.4 cellulase compare
PFLU_RS13955 -1.4 -5.1 hypothetical protein compare
PFLU_RS09720 -1.3 -1.3 single-stranded DNA-binding protein compare
PFLU_RS28965 -1.3 -6.1 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS24025 -1.3 -6.3 quinolinate synthase NadA compare
PFLU_RS13085 -1.3 -2.9 DUF1315 family protein compare
PFLU_RS02365 -1.3 -7.0 glycosyltransferase compare
PFLU_RS23100 -1.3 -3.3 ribonuclease E compare
PFLU_RS13050 -1.3 -4.4 VWA domain-containing protein compare
PFLU_RS25925 -1.3 -1.7 RnfH family protein compare
PFLU_RS21990 -1.3 -4.5 alpha-ribazole phosphatase family protein compare
PFLU_RS22190 -1.2 -1.0 hypothetical protein compare
PFLU_RS02965 -1.2 -6.1 cobalt-precorrin-6A reductase compare
PFLU_RS02275 -1.2 -0.9 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS26165 -1.2 -2.5 hypothetical protein compare
PFLU_RS23885 -1.2 -1.9 transposase compare
PFLU_RS19420 -1.2 -4.5 sigma-70 family RNA polymerase sigma factor compare
PFLU_RS01960 -1.2 -1.5 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS06165 -1.2 -1.9 hypothetical protein compare
PFLU_RS23590 -1.2 -1.5 gluconokinase compare
PFLU_RS22005 -1.2 -5.9 cobyric acid synthase compare
PFLU_RS12685 -1.1 -2.5 hypothetical protein compare
PFLU_RS10595 -1.1 -1.8 hypothetical protein compare
PFLU_RS19170 -1.1 -2.6 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS29490 -1.1 -4.9 ribonuclease PH compare
PFLU_RS04430 -1.1 -3.9 ATP-binding cassette domain-containing protein compare
PFLU_RS13015 -1.1 -3.6 precorrin-4 C(11)-methyltransferase compare
PFLU_RS31710 -1.1 -1.6 hypothetical protein compare
PFLU_RS01665 -1.1 -2.0 glutaredoxin 3 compare
PFLU_RS03970 -1.1 -4.6 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS04835 -1.1 -0.9 hypothetical protein compare
PFLU_RS12740 -1.1 -1.8 BcpO-related WXXGXW repeat protein compare
PFLU_RS04435 -1.1 -3.4 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS27635 -1.1 -3.8 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS22000 -1.1 -4.0 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
PFLU_RS15610 -1.1 -3.3 helix-turn-helix transcriptional regulator compare
PFLU_RS28420 -1.1 -5.0 thiazole synthase compare
PFLU_RS19635 -1.1 -1.7 SDR family oxidoreductase compare
PFLU_RS01285 -1.1 -1.2 HAMP domain-containing protein compare
PFLU_RS15410 -1.1 -1.7 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS24980 -1.1 -1.6 purine-binding chemotaxis protein CheW compare
PFLU_RS03765 -1.1 -5.2 sulfate adenylyltransferase subunit CysD compare
PFLU_RS30905 -1.0 -3.1 hypothetical protein compare
PFLU_RS08505 -1.0 -4.4 protease HtpX compare
PFLU_RS12850 -1.0 -2.5 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS13870 -1.0 -3.1 DUF4411 family protein compare
PFLU_RS22025 -1.0 -6.7 cobyrinate a,c-diamide synthase compare
PFLU_RS24355 -1.0 -2.4 heme oxygenase compare
PFLU_RS17060 -1.0 -1.4 monooxygenase compare
PFLU_RS10290 -1.0 -3.2 glucose 1-dehydrogenase compare
PFLU_RS05050 -1.0 -1.4 response regulator transcription factor compare
PFLU_RS24860 -1.0 -1.3 Fe-S cluster assembly transcriptional regulator IscR compare
PFLU_RS03610 -1.0 -2.8 redox-regulated ATPase YchF compare
PFLU_RS04440 -1.0 -4.8 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS25215 -1.0 -4.9 cytochrome o ubiquinol oxidase subunit I compare
PFLU_RS10090 -1.0 -2.1 redox-sensitive transcriptional activator SoxR compare
PFLU_RS10295 -1.0 -2.9 HAD-IA family hydrolase compare
PFLU_RS14760 -1.0 -1.8 SDR family NAD(P)-dependent oxidoreductase compare
PFLU_RS15755 -1.0 -2.1 type II secretion system protein M compare
PFLU_RS21985 -1.0 -2.4 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS22010 -1.0 -3.9 threonine-phosphate decarboxylase compare
PFLU_RS08280 -1.0 -2.8 hypothetical protein compare
PFLU_RS14450 -1.0 -1.5 AzlD domain-containing protein compare
PFLU_RS31025 -1.0 -2.9 DUF3309 domain-containing protein compare
PFLU_RS08660 -1.0 -1.3 heme exporter protein CcmD compare
PFLU_RS25740 -1.0 -3.2 polynucleotide adenylyltransferase PcnB compare
PFLU_RS19720 -1.0 -1.6 hypothetical protein compare
PFLU_RS12715 -1.0 -1.3 fumarylacetoacetate hydrolase family protein compare
PFLU_RS01910 -1.0 -0.6 sterol-binding protein compare
PFLU_RS13040 -1.0 -5.9 cobaltochelatase subunit CobN compare
PFLU_RS29290 -1.0 -2.5 hypothetical protein compare
PFLU_RS12840 -0.9 -2.0 3-hydroxybutyrate dehydrogenase compare
PFLU_RS23585 -0.9 -4.0 GntP family permease compare
PFLU_RS30480 -0.9 -3.3 hypothetical protein compare
PFLU_RS22725 -0.9 -1.3 transcriptional regulator compare
PFLU_RS11560 -0.9 -2.8 aldolase compare
PFLU_RS31305 -0.9 -2.5 cell wall hydrolase compare
PFLU_RS23310 -0.9 -4.6 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS24090 -0.9 -0.6 Holliday junction branch migration protein RuvA compare
PFLU_RS08990 -0.9 -1.1 hypothetical protein compare
PFLU_RS16865 -0.9 -2.3 hypothetical protein compare
PFLU_RS08160 -0.9 -3.4 sugar transferase compare
PFLU_RS13010 -0.9 -2.5 Fe-S biogenesis protein NfuA compare
PFLU_RS04220 -0.9 -3.8 FadR family transcriptional regulator compare
PFLU_RS25595 -0.9 -0.6 exodeoxyribonuclease V subunit gamma compare
PFLU_RS12395 -0.9 -1.9 zinc ribbon domain-containing protein compare
PFLU_RS21740 -0.9 -2.9 Hpt domain-containing protein compare
PFLU_RS23675 -0.9 -2.0 hypothetical protein compare
PFLU_RS00895 -0.9 -2.1 hypothetical protein compare
PFLU_RS21290 -0.9 -2.7 hypothetical protein compare
PFLU_RS30510 -0.9 -2.2 glycosyltransferase family 4 protein compare
PFLU_RS25730 -0.9 -6.2 PAS domain S-box protein compare
PFLU_RS10885 -0.9 -2.2 LLM class flavin-dependent oxidoreductase compare
PFLU_RS11000 -0.9 -2.0 cysteine dioxygenase compare
PFLU_RS19045 -0.9 -2.9 spore coat protein U domain-containing protein compare
PFLU_RS13775 -0.9 -2.1 hypothetical protein compare
PFLU_RS27915 -0.9 -2.1 DUF3010 family protein compare
PFLU_RS02970 -0.9 -2.6 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
PFLU_RS11060 -0.9 -2.0 DUF3592 domain-containing protein compare
PFLU_RS31510 -0.9 -1.5 transcriptional regulator compare
PFLU_RS27815 -0.9 -3.5 sarcosine oxidase subunit delta compare
PFLU_RS08495 -0.9 -3.0 dioxygenase compare


Specific Phenotypes

For 1 genes in this experiment

For no stress control D-Glucose in Pseudomonas fluorescens SBW25-INTG

For no stress control D-Glucose across organisms