Experiment set14IT077 for Pseudomonas fluorescens FW300-N2E2

Compare to:

10% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine dihydrochloride

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2258 -4.8 -30.9 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_64 -4.1 -2.8 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_71 -4.0 -5.4 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_4509 -3.8 -14.7 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) conserved
Pf6N2E2_5894 -3.8 -5.2 Putative threonine efflux protein compare
Pf6N2E2_3248 -3.7 -5.5 Probable transmembrane protein compare
Pf6N2E2_3610 -3.6 -6.3 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_5156 -3.5 -7.3 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_3782 -3.5 -5.3 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4826 -3.5 -5.7 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_4511 -3.4 -15.1 glutamine synthetase family protein compare
Pf6N2E2_4513 -3.3 -9.1 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) compare
Pf6N2E2_4516 -3.2 -7.4 Putrescine transport system permease protein PotH (TC 3.A.1.11.2) compare
Pf6N2E2_5177 -3.2 -9.8 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_3253 -3.2 -7.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3842 -3.2 -5.1 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3783 -3.2 -6.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_5338 -3.1 -14.4 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_4597 -3.1 -7.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4515 -3.0 -8.2 Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) compare
Pf6N2E2_3932 -3.0 -6.6 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_5899 -2.9 -7.9 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_4187 -2.9 -7.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_4383 -2.9 -9.4 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) compare
Pf6N2E2_4512 -2.9 -13.5 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) conserved
Pf6N2E2_4048 -2.9 -5.6 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_5337 -2.8 -9.9 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_3839 -2.8 -7.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4825 -2.7 -8.5 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_80 -2.6 -8.7 gamma-glutamylputrescine oxidase (EC 1.4.3.-) (from data) conserved
Pf6N2E2_5339 -2.6 -9.7 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_3300 -2.5 -2.9 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_66 -2.5 -9.3 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_4391 -2.5 -10.5 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf6N2E2_4564 -2.5 -8.0 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_77 -2.4 -4.3 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_2261 -2.4 -15.6 VacJ-like lipoprotein precursor compare
Pf6N2E2_4514 -2.3 -7.7 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) conserved
Pf6N2E2_2753 -2.3 -3.0 HtrA protease/chaperone protein compare
Pf6N2E2_63 -2.3 -3.6 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_4596 -2.3 -6.1 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_2073 -2.2 -6.1 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_3260 -2.2 -10.7 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_3940 -2.1 -8.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3257 -2.1 -8.0 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_2552 -2.1 -6.8 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_4803 -2.1 -1.9 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_3258 -2.0 -10.2 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_5157 -2.0 -9.2 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf6N2E2_3869 -2.0 -7.8 Branched-chain amino acid transport protein AzlC compare
Pf6N2E2_2752 -2.0 -8.4 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_3630 -1.9 -3.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_302 -1.9 -4.8 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3170 -1.7 -7.9 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_3807 -1.7 -5.9 Histidine utilization repressor compare
Pf6N2E2_3521 -1.7 -6.1 Sensor histidine kinase/response regulator compare
Pf6N2E2_2588 -1.7 -3.1 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_4390 -1.6 -8.7 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_5728 -1.6 -3.7 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_405 -1.6 -1.4 hypothetical protein compare
Pf6N2E2_3786 -1.6 -3.4 Twin-arginine translocation protein TatC compare
Pf6N2E2_510 -1.5 -6.8 Predicted transcriptional regulator of the myo-inositol catabolic operon compare
Pf6N2E2_4799 -1.5 -10.6 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
Pf6N2E2_2124 -1.5 -1.1 Mg(2+) transport ATPase protein C compare
Pf6N2E2_4153 -1.5 -1.4 Sensory box histidine kinase compare
Pf6N2E2_5258 -1.5 -7.9 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_2320 -1.5 -5.0 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_1774 -1.5 -1.5 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_4059 -1.5 -1.1 DNA-binding protein HU-alpha compare
Pf6N2E2_3655 -1.5 -11.4 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_3251 -1.5 -9.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_4800 -1.4 -10.0 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) compare
Pf6N2E2_5257 -1.4 -9.0 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_3665 -1.4 -1.5 serine/threonine protein kinase compare
Pf6N2E2_4454 -1.4 -4.9 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_3252 -1.4 -4.2 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5176 -1.3 -2.7 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_477 -1.3 -4.2 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf6N2E2_1450 -1.3 -2.2 FIG00960438: hypothetical protein compare
Pf6N2E2_5084 -1.3 -7.7 Glutathione-regulated potassium-efflux system ATP-binding protein compare
Pf6N2E2_3393 -1.3 -5.6 Queuosine Biosynthesis QueC ATPase compare
Pf6N2E2_5160 -1.3 -0.8 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_3899 -1.3 -4.2 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_5746 -1.3 -2.0 Cobalamin synthase compare
Pf6N2E2_3505 -1.3 -1.1 Translation initiation factor SUI1-related protein compare
Pf6N2E2_2442 -1.2 -6.8 sensor histidine kinase/response regulator compare
Pf6N2E2_4801 -1.2 -9.3 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
Pf6N2E2_1625 -1.2 -2.7 Ferric reductase (1.6.99.14) compare
Pf6N2E2_2967 -1.2 -1.2 Cold shock protein CspA compare
Pf6N2E2_5012 -1.2 -4.6 FIG00954871: hypothetical protein conserved
Pf6N2E2_3656 -1.2 -3.1 Probable transcription regulator Mig-14 compare
Pf6N2E2_1735 -1.2 -1.2 PhnB protein compare
Pf6N2E2_2708 -1.2 -4.4 Lactam utilization protein LamB compare
Pf6N2E2_1694 -1.2 -1.6 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_2707 -1.1 -4.2 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_953 -1.1 -1.4 FIG00958851: hypothetical protein compare
Pf6N2E2_5175 -1.1 -2.3 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_1673 -1.1 -2.2 Transcriptional regulator, TetR family compare
Pf6N2E2_2501 -1.1 -1.9 hypothetical protein compare
Pf6N2E2_5555 -1.1 -1.8 Cold shock protein CspA compare
Pf6N2E2_2675 -1.1 -0.5 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_1352 -1.1 -2.0 Cation transport ATPase compare
Pf6N2E2_2318 -1.1 -6.9 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_291 -1.1 -2.7 ATP-dependent Clp protease adaptor protein ClpS compare
Pf6N2E2_2465 -1.1 -5.1 Cys regulon transcriptional activator CysB compare
Pf6N2E2_2865 -1.0 -6.8 Gluconate utilization system Gnt-I transcriptional repressor compare
Pf6N2E2_451 -1.0 -2.1 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_4584 -1.0 -1.9 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_2466 -1.0 -5.5 Universal stress protein family compare
Pf6N2E2_40 -1.0 -2.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2447 -1.0 -5.0 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_5391 -1.0 -6.0 Predicted ATPase related to phosphate starvation-inducible protein PhoH compare
Pf6N2E2_3834 -1.0 -3.4 Lipoprotein NlpD compare
Pf6N2E2_4517 -1.0 -1.3 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
Pf6N2E2_5679 -1.0 -2.6 hypothetical protein compare
Pf6N2E2_4607 -1.0 -2.2 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Pf6N2E2_2455 -1.0 -4.0 FIG00953957: hypothetical protein compare
Pf6N2E2_5956 -1.0 -4.1 FIG004453: protein YceG like compare
Pf6N2E2_3122 -1.0 -1.8 Chemotaxis signal transduction protein compare
Pf6N2E2_5133 -1.0 -1.9 FIG00953980: hypothetical protein compare
Pf6N2E2_895 -1.0 -1.8 Transcriptional regulator, HxlR family compare
Pf6N2E2_78 -1.0 -3.8 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_4351 -1.0 -5.7 Predicted signal transduction protein compare
Pf6N2E2_3762 -1.0 -3.0 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf6N2E2_5499 -1.0 -1.4 hypothetical protein compare
Pf6N2E2_1534 -1.0 -1.0 Probable transmembrane protein compare
Pf6N2E2_1660 -1.0 -1.6 RND efflux system, membrane fusion protein CmeA compare
Pf6N2E2_924 -0.9 -0.9 Transcriptional regulator XdhR, TetR family compare
Pf6N2E2_4817 -0.9 -7.2 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) compare
Pf6N2E2_987 -0.9 -1.5 hypothetical protein compare
Pf6N2E2_4585 -0.9 -4.9 Cell division protein FtsX compare
Pf6N2E2_2375 -0.9 -1.4 Response regulator NasT compare
Pf6N2E2_3589 -0.9 -1.8 Lysine decarboxylase family compare
Pf6N2E2_863 -0.9 -3.6 Transcriptional regulator, IclR family compare
Pf6N2E2_3785 -0.9 -2.7 Twin-arginine translocation protein TatB compare
Pf6N2E2_3384 -0.9 -2.8 Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG compare
Pf6N2E2_2714 -0.9 -1.0 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_2706 -0.9 -1.6 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_2549 -0.9 -1.1 hypothetical protein compare
Pf6N2E2_2938 -0.9 -3.2 Outer membrane lipoprotein compare
Pf6N2E2_5252 -0.9 -0.9 FIG00956396: hypothetical protein compare
Pf6N2E2_4057 -0.9 -0.8 lipoprotein, putative compare
Pf6N2E2_4506 -0.9 -2.2 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_962 -0.9 -1.6 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_54 -0.9 -2.7 Transcriptional regulator, TetR family compare
Pf6N2E2_3938 -0.9 -5.7 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_3810 -0.8 -2.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5093 -0.8 -5.7 ATP-dependent protease La (EC 3.4.21.53) Type II compare
Pf6N2E2_4047 -0.8 -0.8 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_3349 -0.8 -0.6 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_4441 -0.8 -3.9 Homoserine/homoserine lactone efflux protein compare
Pf6N2E2_2587 -0.8 -5.6 Serine phosphatase RsbU, regulator of sigma subunit compare
Pf6N2E2_5155 -0.8 -1.3 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_84 -0.8 -1.7 hypothetical protein compare
Pf6N2E2_3039 -0.8 -3.7 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_5749 -0.8 -1.9 hypothetical protein compare
Pf6N2E2_3841 -0.8 -0.9 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_946 -0.8 -1.6 Transcriptional regulator, LysR family compare
Pf6N2E2_4824 -0.8 -2.5 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf6N2E2_865 -0.8 -1.5 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_2473 -0.8 -1.4 Major outer membrane lipoprotein I compare
Pf6N2E2_2003 -0.8 -1.7 hypothetical protein compare
Pf6N2E2_3475 -0.8 -1.2 hypothetical protein compare
Pf6N2E2_4988 -0.8 -2.2 Antiholin-like protein LrgA compare
Pf6N2E2_6100 -0.8 -1.6 tRNA-Val-TAC compare
Pf6N2E2_2284 -0.8 -1.8 Cell division inhibitor-related protein compare
Pf6N2E2_3027 -0.8 -1.2 Baseplate assembly protein V compare
Pf6N2E2_3969 -0.8 -0.8 Membrane-fusion protein compare
Pf6N2E2_1308 -0.8 -2.3 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) compare
Pf6N2E2_142 -0.8 -1.8 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2788 -0.8 -1.1 Transcriptional regulator, AsnC family compare
Pf6N2E2_5950 -0.8 -1.4 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_2317 -0.7 -3.1 Putative analog of CcoH, COG3198 compare
Pf6N2E2_2033 -0.7 -2.8 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf6N2E2_5733 -0.7 -2.7 NLP/P60 family protein compare
Pf6N2E2_5455 -0.7 -1.7 hypothetical protein compare
Pf6N2E2_1566 -0.7 -1.9 FIG00960770: hypothetical protein compare
Pf6N2E2_74 -0.7 -1.9 DedD protein compare
Pf6N2E2_5666 -0.7 -3.1 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_2964 -0.7 -2.2 FIG006285: ICC-like protein phosphoesterase compare
Pf6N2E2_1396 -0.7 -1.2 ABC transporter, ATP-binding protein compare
Pf6N2E2_4392 -0.7 -1.3 Translation initiation inhibitor compare
Pf6N2E2_5300 -0.7 -3.8 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_3876 -0.7 -2.1 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_5869 -0.7 -1.6 Helicase subunit of the DNA excision repair complex compare
Pf6N2E2_1076 -0.7 -2.5 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) compare
Pf6N2E2_3875 -0.7 -1.1 FIG00953324: hypothetical protein compare
Pf6N2E2_5062 -0.7 -1.7 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf6N2E2_5545 -0.7 -1.4 Queuosine Biosynthesis QueE Radical SAM compare
Pf6N2E2_5006 -0.7 -0.7 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_682 -0.7 -2.8 Predicted regulator PutR for proline utilization, GntR family compare
Pf6N2E2_5523 -0.7 -2.0 Small-conductance mechanosensitive channel compare
Pf6N2E2_4804 -0.7 -2.2 ApaG protein compare
Pf6N2E2_4451 -0.7 -3.0 FIG139438: lipoprotein B compare
Pf6N2E2_5761 -0.7 -1.4 Transcriptional regulator, TetR family compare
Pf6N2E2_5810 -0.7 -1.9 Homoserine/homoserine lactone efflux protein compare
Pf6N2E2_1501 -0.7 -1.6 Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) compare
Pf6N2E2_479 -0.7 -2.4 Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) (from data) compare
Pf6N2E2_292 -0.7 -2.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf6N2E2_5158 -0.7 -2.9 FIG00954153: hypothetical protein compare


Specific Phenotypes

For 10 genes in this experiment

For resistance P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine dihydrochloride in Pseudomonas fluorescens FW300-N2E2

For resistance P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine dihydrochloride across organisms