Experiment set14IT073 for Pseudomonas fluorescens FW300-N2E2

Compare to:

50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine dihydrochloride

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2258 -4.3 -29.1 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3842 -4.2 -4.0 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_5899 -4.0 -8.4 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_4509 -3.9 -15.1 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) conserved
Pf6N2E2_4511 -3.8 -15.1 glutamine synthetase family protein compare
Pf6N2E2_3248 -3.8 -5.6 Probable transmembrane protein compare
Pf6N2E2_3253 -3.6 -7.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3839 -3.5 -7.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3610 -3.5 -7.3 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_5156 -3.5 -7.0 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_71 -3.5 -6.8 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_3665 -3.4 -2.0 serine/threonine protein kinase compare
Pf6N2E2_5177 -3.3 -9.6 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_4516 -3.3 -7.5 Putrescine transport system permease protein PotH (TC 3.A.1.11.2) compare
Pf6N2E2_3932 -3.3 -6.7 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_5894 -3.3 -7.0 Putative threonine efflux protein compare
Pf6N2E2_3783 -3.2 -6.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_4826 -3.2 -6.3 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_3782 -3.2 -5.5 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4515 -3.2 -8.2 Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) compare
Pf6N2E2_64 -3.0 -3.4 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_4391 -3.0 -12.9 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf6N2E2_5338 -2.9 -14.1 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_2869 -2.9 -1.9 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_4825 -2.9 -8.9 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_4597 -2.9 -7.7 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4383 -2.9 -9.7 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) compare
Pf6N2E2_5339 -2.9 -10.0 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_4512 -2.8 -13.8 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) conserved
Pf6N2E2_4596 -2.8 -6.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4513 -2.7 -10.4 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) compare
Pf6N2E2_4048 -2.7 -6.3 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_477 -2.6 -5.8 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf6N2E2_66 -2.6 -9.8 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_2261 -2.6 -15.1 VacJ-like lipoprotein precursor compare
Pf6N2E2_80 -2.6 -8.8 gamma-glutamylputrescine oxidase (EC 1.4.3.-) (from data) conserved
Pf6N2E2_5337 -2.6 -9.8 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_1694 -2.5 -2.4 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_4584 -2.5 -2.8 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_3258 -2.4 -11.2 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_4187 -2.4 -7.0 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3300 -2.3 -3.1 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_5950 -2.3 -2.6 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_4514 -2.3 -7.8 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) conserved
Pf6N2E2_3260 -2.3 -11.1 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_302 -2.3 -5.4 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3630 -2.3 -3.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4564 -2.2 -9.0 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_63 -2.2 -3.7 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_4800 -2.2 -13.6 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) compare
Pf6N2E2_2752 -2.2 -9.0 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_2552 -2.2 -8.8 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_2487 -2.2 -1.2 FIG00956090: hypothetical protein compare
Pf6N2E2_2073 -2.2 -5.8 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_5084 -2.1 -10.2 Glutathione-regulated potassium-efflux system ATP-binding protein compare
Pf6N2E2_4390 -2.0 -10.6 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_4799 -2.0 -12.9 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
Pf6N2E2_77 -2.0 -4.3 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_4801 -1.9 -13.2 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
Pf6N2E2_4454 -1.9 -5.3 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_4803 -1.9 -1.7 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_3940 -1.9 -8.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_1450 -1.8 -2.7 FIG00960438: hypothetical protein compare
Pf6N2E2_2442 -1.7 -8.5 sensor histidine kinase/response regulator compare
Pf6N2E2_37 -1.7 -1.6 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_5545 -1.7 -2.4 Queuosine Biosynthesis QueE Radical SAM compare
Pf6N2E2_3786 -1.7 -3.8 Twin-arginine translocation protein TatC compare
Pf6N2E2_2588 -1.7 -3.1 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_2466 -1.6 -7.8 Universal stress protein family compare
Pf6N2E2_5176 -1.6 -1.9 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_3257 -1.6 -7.1 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_5728 -1.6 -3.7 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_3323 -1.6 -4.1 hypothetical protein compare
Pf6N2E2_987 -1.6 -2.1 hypothetical protein compare
Pf6N2E2_5257 -1.6 -9.8 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_3899 -1.6 -4.4 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_3251 -1.6 -9.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_3521 -1.5 -6.1 Sensor histidine kinase/response regulator compare
Pf6N2E2_3807 -1.5 -5.7 Histidine utilization repressor compare
Pf6N2E2_3170 -1.5 -5.8 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_3727 -1.5 -2.4 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) compare
Pf6N2E2_2473 -1.5 -2.3 Major outer membrane lipoprotein I compare
Pf6N2E2_5157 -1.5 -5.6 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf6N2E2_5342 -1.4 -1.5 21 kDa hemolysin precursor compare
Pf6N2E2_5258 -1.4 -7.6 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_40 -1.4 -2.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_510 -1.4 -6.1 Predicted transcriptional regulator of the myo-inositol catabolic operon compare
Pf6N2E2_3328 -1.4 -2.5 transcriptional regulator compare
Pf6N2E2_291 -1.4 -3.2 ATP-dependent Clp protease adaptor protein ClpS compare
Pf6N2E2_2124 -1.4 -1.6 Mg(2+) transport ATPase protein C compare
Pf6N2E2_2865 -1.3 -8.2 Gluconate utilization system Gnt-I transcriptional repressor compare
Pf6N2E2_5012 -1.3 -5.0 FIG00954871: hypothetical protein conserved
Pf6N2E2_5160 -1.3 -0.9 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_5734 -1.3 -6.0 NLP/P60 family protein compare
Pf6N2E2_2501 -1.3 -2.3 hypothetical protein compare
Pf6N2E2_3393 -1.3 -5.4 Queuosine Biosynthesis QueC ATPase compare
Pf6N2E2_4459 -1.3 -1.1 Transcriptional regulator, GntR family compare
Pf6N2E2_2753 -1.2 -2.2 HtrA protease/chaperone protein compare
Pf6N2E2_1735 -1.2 -1.6 PhnB protein compare
Pf6N2E2_4585 -1.2 -6.0 Cell division protein FtsX compare
Pf6N2E2_1293 -1.2 -2.0 COG2879, Hypothetical small protein yjiX compare
Pf6N2E2_631 -1.2 -4.4 2-ketogluconate utilization repressor PtxS compare
Pf6N2E2_2967 -1.2 -1.2 Cold shock protein CspA compare
Pf6N2E2_5523 -1.2 -3.0 Small-conductance mechanosensitive channel compare
Pf6N2E2_4517 -1.2 -0.8 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
Pf6N2E2_4052 -1.2 -1.2 FIG00955481: hypothetical protein compare
Pf6N2E2_4817 -1.2 -8.8 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) compare
Pf6N2E2_4271 -1.2 -5.4 FIG00956226: hypothetical protein compare
Pf6N2E2_4607 -1.2 -2.6 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Pf6N2E2_4640 -1.2 -1.8 hypothetical protein compare
Pf6N2E2_619 -1.1 -2.9 Exonuclease SbcD compare
Pf6N2E2_5956 -1.1 -4.5 FIG004453: protein YceG like compare
Pf6N2E2_5679 -1.1 -2.8 hypothetical protein compare
Pf6N2E2_3252 -1.1 -4.0 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_1859 -1.1 -2.3 hypothetical protein compare
Pf6N2E2_5391 -1.1 -6.4 Predicted ATPase related to phosphate starvation-inducible protein PhoH compare
Pf6N2E2_2938 -1.1 -4.1 Outer membrane lipoprotein compare
Pf6N2E2_3720 -1.1 -2.2 FIG027190: Putative transmembrane protein compare
Pf6N2E2_3349 -1.1 -1.2 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_2201 -1.1 -2.6 Transmembrane regulator protein PrtR compare
Pf6N2E2_2069 -1.1 -1.8 FIG00953703: hypothetical protein compare
Pf6N2E2_3826 -1.1 -2.4 Nitrogen regulation protein NR(I) compare
Pf6N2E2_5993 -1.1 -1.2 FIG00957412: hypothetical protein compare
Pf6N2E2_4751 -1.1 -2.3 response regulator compare
Pf6N2E2_2587 -1.0 -6.9 Serine phosphatase RsbU, regulator of sigma subunit compare
Pf6N2E2_3785 -1.0 -2.9 Twin-arginine translocation protein TatB compare
Pf6N2E2_5733 -1.0 -3.5 NLP/P60 family protein compare
Pf6N2E2_3039 -1.0 -4.8 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_1652 -1.0 -1.5 Transcriptional regulator, TetR family compare
Pf6N2E2_2306 -1.0 -2.4 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_687 -1.0 -2.3 4-oxalocrotonate tautomerase (EC 5.3.2.-) compare
Pf6N2E2_5300 -1.0 -4.9 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_3656 -1.0 -3.5 Probable transcription regulator Mig-14 compare
Pf6N2E2_300 -1.0 -1.7 CrcB protein compare
Pf6N2E2_3762 -1.0 -3.1 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf6N2E2_2320 -1.0 -3.6 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_5666 -1.0 -4.0 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_5027 -1.0 -5.5 AMP nucleosidase (EC 3.2.2.4) compare
Pf6N2E2_1534 -0.9 -1.2 Probable transmembrane protein compare
Pf6N2E2_292 -0.9 -2.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf6N2E2_2465 -0.9 -4.0 Cys regulon transcriptional activator CysB compare
Pf6N2E2_2373 -0.9 -2.4 Type III secretion thermoregulatory protein (LcrF,VirF,transcription regulation of virulence plasmid) compare
Pf6N2E2_5252 -0.9 -0.9 FIG00956396: hypothetical protein compare
Pf6N2E2_586 -0.9 -5.6 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) compare
Pf6N2E2_2186 -0.9 -2.9 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf6N2E2_3876 -0.9 -2.5 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_1625 -0.9 -2.2 Ferric reductase (1.6.99.14) compare
Pf6N2E2_2064 -0.9 -1.8 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_1774 -0.9 -1.0 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_146 -0.9 -1.2 Transcriptional regulator, MarR family compare
Pf6N2E2_4594 -0.9 -1.4 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Pf6N2E2_5133 -0.9 -1.2 FIG00953980: hypothetical protein compare
Pf6N2E2_3546 -0.9 -2.0 ABC transporter (iron.B12.siderophore.hemin) , permease component compare
Pf6N2E2_2340 -0.9 -1.4 Transcriptional regulator, GntR family compare
Pf6N2E2_4824 -0.9 -3.7 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf6N2E2_2074 -0.9 -0.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_5544 -0.8 -4.5 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_5237 -0.8 -1.4 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_2455 -0.8 -3.4 FIG00953957: hypothetical protein compare
Pf6N2E2_4441 -0.8 -3.9 Homoserine/homoserine lactone efflux protein compare
Pf6N2E2_2586 -0.8 -0.7 Hpt domain protein compare
Pf6N2E2_1352 -0.8 -2.0 Cation transport ATPase compare
Pf6N2E2_5555 -0.8 -1.4 Cold shock protein CspA compare
Pf6N2E2_5394 -0.8 -1.7 Molybdenum cofactor biosynthesis protein MoaE compare
Pf6N2E2_2681 -0.8 -2.5 3-phosphoglycerate kinase compare
Pf6N2E2_5505 -0.8 -2.1 hypothetical protein compare
Pf6N2E2_3617 -0.8 -2.4 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_5243 -0.8 -0.9 hypothetical protein compare
Pf6N2E2_2223 -0.8 -2.1 hypothetical protein compare
Pf6N2E2_5820 -0.8 -1.4 FIG00957914: hypothetical protein compare
Pf6N2E2_5571 -0.8 -1.3 hypothetical protein compare
Pf6N2E2_863 -0.8 -3.2 Transcriptional regulator, IclR family compare
Pf6N2E2_2707 -0.8 -3.1 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_2978 -0.8 -3.1 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase compare
Pf6N2E2_6062 -0.8 -4.3 2-methylcitrate synthase (EC 2.3.3.5) (from data) compare
Pf6N2E2_136 -0.8 -2.1 Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE compare
Pf6N2E2_5738 -0.8 -3.1 Cobyrinic acid A,C-diamide synthase compare
Pf6N2E2_658 -0.8 -4.6 sensor histidine kinase compare
Pf6N2E2_2788 -0.8 -1.2 Transcriptional regulator, AsnC family compare
Pf6N2E2_3834 -0.8 -2.4 Lipoprotein NlpD compare
Pf6N2E2_2858 -0.8 -1.5 Phosphohydrolase (MutT/nudix family protein) compare
Pf6N2E2_479 -0.8 -2.7 Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) (from data) compare
Pf6N2E2_815 -0.8 -3.5 Signal transduction histidine kinase compare
Pf6N2E2_5522 -0.8 -1.5 FIG001943: hypothetical protein YajQ compare
Pf6N2E2_2549 -0.8 -1.1 hypothetical protein compare
Pf6N2E2_2071 -0.8 -2.1 hypothetical protein compare
Pf6N2E2_3841 -0.8 -1.0 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_2447 -0.8 -3.0 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_2010 -0.7 -0.6 hypothetical protein compare
Pf6N2E2_6140 -0.7 -0.5 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_2425 -0.7 -2.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4128 -0.7 -2.0 hypothetical protein compare
Pf6N2E2_2396 -0.7 -2.2 Sensor histidine kinase compare
Pf6N2E2_122 -0.7 -1.1 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_4715 -0.7 -2.2 Low-specificity L-threonine aldolase (EC 4.1.2.48) compare
Pf6N2E2_4197 -0.7 -2.5 DNA recombination and repair protein RecF compare
Pf6N2E2_4708 -0.7 -2.4 hypothetical protein compare
Pf6N2E2_4804 -0.7 -2.9 ApaG protein compare
Pf6N2E2_1302 -0.7 -2.2 TRAP-type C4-dicarboxylate transport system, large permease component compare
Pf6N2E2_2318 -0.7 -4.9 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare


Specific Phenotypes

For 22 genes in this experiment

For resistance P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine dihydrochloride in Pseudomonas fluorescens FW300-N2E2

For resistance P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine dihydrochloride across organisms