Experiment set14IT072 for Klebsiella michiganensis M5al

Compare to:

LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS07730 +2.3 1.4 iron-enterobactin transporter membrane protein compare
BWI76_RS19495 +2.2 2.1 ABC transporter, quaternary amine uptake transporter (QAT) family, ATP-binding protein compare
BWI76_RS18770 +2.1 2.2 DNA gyrase inhibitor compare
BWI76_RS11820 +1.9 2.8 short-chain dehydrogenase/reductase SDR compare
BWI76_RS01940 +1.9 2.9 hypothetical protein compare
BWI76_RS12665 +1.8 2.4 hypothetical protein compare
BWI76_RS05950 +1.8 2.8 polar amino acid ABC transporter inner membrane subunit compare
BWI76_RS15975 +1.8 1.4 hypothetical protein compare
BWI76_RS11335 +1.7 2.5 tautomerase compare
BWI76_RS01935 +1.6 2.6 thiamin phosphate synthase compare
BWI76_RS04955 +1.6 2.4 hypoxanthine phosphoribosyltransferase compare
BWI76_RS12790 +1.5 1.3 lactate dehydrogenase compare
BWI76_RS12910 +1.5 1.8 3,4-dihydroxyphenylacetate 2,3-dioxygenase compare
BWI76_RS13215 +1.4 2.1 type I glyceraldehyde-3-phosphate dehydrogenase compare
BWI76_RS23050 +1.4 2.7 cobalt-precorrin-3B C(17)-methyltransferase compare
BWI76_RS09420 +1.4 2.1 hypothetical protein compare
BWI76_RS08885 +1.4 2.5 transcriptional regulator compare
BWI76_RS23895 +1.4 1.3 Xaa-Pro aminopeptidase compare
BWI76_RS14930 +1.4 2.6 hypothetical protein compare
BWI76_RS27395 +1.4 5.5 hypothetical protein compare
BWI76_RS06325 +1.4 2.3 hypothetical protein compare
BWI76_RS15290 +1.4 1.5 transcriptional regulator compare
BWI76_RS21945 +1.4 4.1 LysR family transcriptional regulator compare
BWI76_RS09530 +1.3 1.6 hypothetical protein compare
BWI76_RS11780 +1.3 1.9 2-deoxyglucose-6-phosphatase compare
BWI76_RS24885 +1.3 0.9 PTS galactitol transporter subunit IIB compare
BWI76_RS05810 +1.3 1.4 hypothetical protein compare
BWI76_RS03595 +1.3 2.1 ethanolamine utilization protein EutM compare
BWI76_RS18130 +1.3 4.6 zinc ABC transporter substrate-binding protein compare
BWI76_RS18360 +1.3 1.7 aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein compare
BWI76_RS19310 +1.2 2.5 ABC transporter permease compare
BWI76_RS17675 +1.2 1.3 hypothetical protein compare
BWI76_RS25375 +1.2 2.0 hypothetical protein compare
BWI76_RS27455 +1.2 1.8 DUF805 domain-containing protein compare
BWI76_RS13435 +1.2 1.2 hypothetical protein compare
BWI76_RS07780 +1.2 1.2 hypothetical protein compare
BWI76_RS14805 +1.2 2.4 hypothetical protein compare
BWI76_RS09455 +1.2 2.8 YbjN domain-containing protein compare
BWI76_RS25485 +1.2 1.8 septum formation protein Maf compare
BWI76_RS22625 +1.2 1.1 transcriptional regulator compare
BWI76_RS23885 +1.1 0.6 2-octaprenylphenol hydroxylase compare
BWI76_RS12420 +1.1 1.1 peptide ABC transporter substrate-binding protein SapA compare
BWI76_RS25915 +1.1 3.3 protein SlyX compare
BWI76_RS15090 +1.1 2.9 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase compare
BWI76_RS01565 +1.1 1.8 NADH pyrophosphatase compare
BWI76_RS04275 +1.1 3.9 molybdopterin adenylyltransferase compare
BWI76_RS19850 +1.1 1.2 tRNA-Pro compare
BWI76_RS01585 +1.0 3.6 transcriptional regulator compare
BWI76_RS21115 +1.0 1.3 3-mercaptopyruvate sulfurtransferase compare
BWI76_RS10500 +1.0 1.7 flavoprotein monooxygenase compare
BWI76_RS20715 +1.0 1.4 RpoE-regulated lipoprotein compare
BWI76_RS03295 +1.0 0.8 transposase compare
BWI76_RS05070 +1.0 2.3 type II secretion system protein GspH compare
BWI76_RS21375 +1.0 0.8 autonomous glycyl radical cofactor GrcA compare
BWI76_RS22280 +1.0 2.4 formate dehydrogenase-H ferredoxin subunit compare
BWI76_RS23250 +1.0 1.9 hypothetical protein compare
BWI76_RS08585 +1.0 2.1 nicotinamide riboside transporter PnuC compare
BWI76_RS04900 +1.0 2.7 DUF2950 domain-containing protein compare
BWI76_RS05570 +1.0 0.7 hypothetical protein compare
BWI76_RS17380 +1.0 2.9 nitrate transporter component compare
BWI76_RS18610 +1.0 3.8 transcriptional regulator LysR compare
BWI76_RS15445 +1.0 2.2 hypothetical protein compare
BWI76_RS21275 +1.0 4.9 lytic transglycosylase F compare
BWI76_RS01240 +0.9 4.0 phospholipase A compare
BWI76_RS16735 +0.9 1.4 cold-shock protein compare
BWI76_RS16355 +0.9 1.9 electron transport complex subunit A compare
BWI76_RS19405 +0.9 3.1 LysR family transcriptional regulator compare
BWI76_RS06130 +0.9 1.9 extensin family protein compare
BWI76_RS10400 +0.9 2.6 hypothetical protein compare
BWI76_RS15775 +0.9 1.6 replication protein compare
BWI76_RS12780 +0.9 1.3 hypothetical protein compare
BWI76_RS16160 +0.9 1.7 LysR family transcriptional regulator compare
BWI76_RS22200 +0.9 3.5 iron ABC transporter compare
BWI76_RS11810 +0.9 1.2 outer membrane protein OmpW compare
BWI76_RS23520 +0.9 1.1 hypothetical protein compare
BWI76_RS18165 +0.9 0.9 NUDIX pyrophosphatase compare
BWI76_RS16975 +0.9 2.5 cysteine desufuration protein SufE compare
BWI76_RS04895 +0.9 0.9 hypothetical protein compare
BWI76_RS15950 +0.9 1.2 dethiobiotin synthase compare
BWI76_RS03025 +0.9 1.0 N-acetyltransferase compare
BWI76_RS00865 +0.9 1.9 DNA-binding transcriptional regulator OxyR compare
BWI76_RS16695 +0.9 2.2 dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein compare
BWI76_RS19540 +0.9 3.5 multidrug transporter permease compare
BWI76_RS26620 +0.9 0.5 Fe-S biogenesis protein NfuA compare
BWI76_RS12825 +0.9 1.8 hypothetical protein compare
BWI76_RS26480 +0.9 2.4 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
BWI76_RS18455 +0.9 0.6 tRNA-Ser compare
BWI76_RS20960 +0.9 2.1 ROK family protein compare
BWI76_RS11500 +0.8 2.3 D-hexose-6-phosphate mutarotase compare
BWI76_RS25195 +0.8 2.0 maltose metabolism regulator compare
BWI76_RS17525 +0.8 1.4 XshC-Cox1-family protein compare
BWI76_RS05235 +0.8 0.6 hypothetical protein compare
BWI76_RS15185 +0.8 1.9 N-acetyltransferase compare
BWI76_RS14020 +0.8 1.9 aspartate aminotransferase family protein compare
BWI76_RS11365 +0.8 3.1 iron ABC transporter compare
BWI76_RS14680 +0.8 2.0 SefF compare
BWI76_RS04210 +0.8 1.7 hypothetical protein compare
BWI76_RS02990 +0.8 3.6 aspartate carbamoyltransferase regulatory subunit compare
BWI76_RS09085 +0.8 3.6 molybdopterin molybdenumtransferase MoeA compare
BWI76_RS23945 +0.8 1.0 methylmalonyl-CoA decarboxylase compare
BWI76_RS07640 +0.8 1.1 short chain dehydrogenase compare
BWI76_RS16750 +0.8 4.0 acetolactate synthase compare
BWI76_RS07165 +0.8 1.9 hypothetical protein compare
BWI76_RS24575 +0.8 1.2 hypothetical protein compare
BWI76_RS13420 +0.8 1.0 ABC transporter permease compare
BWI76_RS23030 +0.8 1.4 cobalamin biosynthesis protein CbiM compare
BWI76_RS07920 +0.8 1.5 methionine aminotransferase compare
BWI76_RS11840 +0.8 1.5 tryptophan synthase subunit alpha compare
BWI76_RS09895 +0.8 1.1 aliphatic sulfonates ABC transporter ATP-binding protein compare
BWI76_RS01890 +0.8 2.7 transcriptional regulator Zur compare
BWI76_RS17970 +0.8 1.8 zinc metalloprotease HtpX compare
BWI76_RS02725 +0.8 0.6 HxlR family transcriptional regulator compare
BWI76_RS23015 +0.8 1.2 cobalt transporter ATP-binding subunit compare
BWI76_RS15435 +0.8 0.8 hypothetical protein compare
BWI76_RS16655 +0.8 2.0 CatA-like O-acetyltransferase compare
BWI76_RS20970 +0.8 1.1 phosphoribosylglycinamide formyltransferase compare
BWI76_RS08615 +0.8 2.9 galactokinase compare
BWI76_RS00330 +0.8 4.5 molybdenum cofactor guanylyltransferase compare
BWI76_RS13530 +0.8 4.1 amidohydrolase family protein compare
BWI76_RS10755 +0.8 1.0 pyrimidine utilization flavin reductase protein F compare
BWI76_RS16915 +0.8 2.8 alpha/beta hydrolase fold protein compare
BWI76_RS16970 +0.8 2.7 murein L,D-transpeptidase compare
BWI76_RS20410 +0.8 2.2 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC compare
BWI76_RS23530 +0.8 1.7 MarR family transcriptional regulator compare
BWI76_RS20675 +0.8 2.7 GMP synthase compare
BWI76_RS11755 +0.8 2.2 catalase HPII compare
BWI76_RS04600 +0.8 2.1 inner membrane protein compare
BWI76_RS22685 +0.8 2.7 hypothetical protein compare
BWI76_RS26370 +0.8 3.7 aromatic amino acid transporter compare
BWI76_RS11180 +0.8 2.8 hypothetical protein compare
BWI76_RS26490 +0.8 3.6 phenolic acid decarboxylase compare
BWI76_RS01225 +0.8 3.8 magnesium transporter CorA compare
BWI76_RS06335 +0.8 2.3 nucleoside-specific channel-forming protein Tsx compare
BWI76_RS00515 +0.8 2.1 PTS fructose transporter subunit IIA compare
BWI76_RS15940 +0.8 1.3 DMSO reductase maturation protein DsmD compare
BWI76_RS20795 +0.8 0.9 ethanolamine catabolic microcompartment shell protein EutN compare
BWI76_RS11705 +0.8 1.6 hypothetical protein compare
BWI76_RS15315 +0.8 2.2 DNA-binding protein compare
BWI76_RS08815 +0.8 3.8 cyclic pyranopterin phosphate synthase compare
BWI76_RS23135 +0.8 3.8 propanediol dehydratase compare
BWI76_RS09520 +0.8 1.2 arginine ABC transporter ATP-binding protein ArtP compare
BWI76_RS23340 +0.8 1.0 transcriptional regulator compare
BWI76_RS15270 +0.8 1.8 phenazine biosynthesis protein PhzF family compare
BWI76_RS24610 +0.8 1.9 dihydroxyacetone kinase compare
BWI76_RS08310 +0.7 1.1 potassium-transporting ATPase subunit C compare
BWI76_RS19240 +0.7 1.1 ABC transporter substrate-binding protein compare
BWI76_RS00475 +0.7 3.8 sulfurtransferase FdhD compare
BWI76_RS17315 +0.7 1.7 EamA family transporter compare
BWI76_RS00470 +0.7 3.1 sulfate ABC transporter substrate-binding protein compare
BWI76_RS09220 +0.7 2.7 hypothetical protein compare
BWI76_RS24925 +0.7 1.6 DnaA initiator-associating protein DiaA compare
BWI76_RS21365 +0.7 3.0 tRNA (adenosine(37)-N6)-methyltransferase TrmM compare
BWI76_RS11260 +0.7 1.1 hypothetical protein compare
BWI76_RS18135 +0.7 2.1 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS22930 +0.7 2.2 L-fuculokinase (EC 2.7.1.51) (from data) compare
BWI76_RS14550 +0.7 2.6 2,3-dihydroxybenzoate-AMP ligase compare
BWI76_RS18385 +0.7 1.0 hypothetical protein compare
BWI76_RS10975 +0.7 2.0 N-methyltryptophan oxidase compare
BWI76_RS27945 +0.7 1.5 2-oxo-3-deoxygalactonate kinase compare
BWI76_RS27875 +0.7 0.8 membrane protein compare
BWI76_RS11235 +0.7 0.9 hypothetical protein compare
BWI76_RS02685 +0.7 1.6 opacity-associated protein compare
BWI76_RS15980 +0.7 1.4 lysine transporter LysE compare
BWI76_RS05410 +0.7 1.5 2,5-didehydrogluconate reductase B compare
BWI76_RS08315 +0.7 1.4 K+-transporting ATPase subunit B compare
BWI76_RS12465 +0.7 0.8 phage shock protein D compare
BWI76_RS20965 +0.7 2.1 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS21485 +0.7 3.0 DUF4154 domain-containing protein compare
BWI76_RS09335 +0.7 0.6 baseplate assembly protein W compare
BWI76_RS13315 +0.7 1.0 50S ribosomal protein L7/L12-serine acetyltransferase compare
BWI76_RS18055 +0.7 1.9 copper resistance protein D compare
BWI76_RS20025 +0.7 2.5 HAMP domain-containing histidine kinase compare
BWI76_RS17335 +0.7 3.7 nitrate reductase subunit alpha compare
BWI76_RS14840 +0.7 2.2 hypothetical protein compare
BWI76_RS01795 +0.7 1.3 hypothetical protein compare
BWI76_RS13405 +0.7 2.2 spermidine/putrescine ABC transporter substrate-binding protein compare
BWI76_RS01235 +0.7 1.4 hypothetical protein compare
BWI76_RS13720 +0.7 2.2 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
BWI76_RS17235 +0.7 2.2 peptide ABC transporter permease compare
BWI76_RS27670 +0.7 1.6 LysR family transcriptional regulator compare
BWI76_RS20915 +0.7 2.7 peroxiredoxin compare
BWI76_RS24720 +0.7 1.2 hypothetical protein compare
BWI76_RS06980 +0.7 1.8 ureidoglycolate lyase compare
BWI76_RS15255 +0.7 1.9 hypothetical protein compare
BWI76_RS21755 +0.7 3.0 hypothetical protein compare
BWI76_RS13095 +0.7 1.2 phenylacetate-CoA oxygenase subunit PaaB compare
BWI76_RS17200 +0.7 1.3 hypothetical protein compare
BWI76_RS18800 +0.7 2.4 transcriptional regulator compare
BWI76_RS24655 +0.7 1.6 autoinducer 2 ABC transporter permease LsrC compare
BWI76_RS08905 +0.7 2.2 transketolase compare
BWI76_RS05640 +0.7 1.8 GntR family transcriptional regulator compare
BWI76_RS11245 +0.7 3.0 spermidine/putrescine ABC transporter permease PotC compare
BWI76_RS15165 +0.7 2.1 MBL fold metallo-hydrolase compare
BWI76_RS02720 +0.7 2.2 NAD(P)-dependent oxidoreductase compare
BWI76_RS01195 +0.7 0.7 membrane protein compare
BWI76_RS12595 +0.7 2.3 hypothetical protein compare
BWI76_RS20340 +0.7 0.9 histidine ABC transporter substrate-binding protein HisJ compare
BWI76_RS22775 +0.7 1.3 6-carboxytetrahydropterin synthase QueD compare
BWI76_RS13155 +0.7 2.0 hypothetical protein compare
BWI76_RS02630 +0.7 1.9 PTS ascorbate transporter subunit IIA compare


Specific Phenotypes

For 1 genes in this experiment

For mixed community Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL in Klebsiella michiganensis M5al

For mixed community Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL across organisms