Experiment set14IT071 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Glucose (C) and Ammonium chloride (N); with TAPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS20575 -4.5 -6.1 3-isopropylmalate dehydratase small subunit compare
PFLU_RS20565 -4.3 -11.8 3-isopropylmalate dehydrogenase compare
PFLU_RS28535 -4.1 -15.7 dihydroxy-acid dehydratase compare
PFLU_RS28695 -4.0 -9.7 phosphoglycerate dehydrogenase compare
PFLU_RS20580 -3.9 -12.0 3-isopropylmalate dehydratase large subunit compare
PFLU_RS02490 -3.8 -14.2 phosphoserine phosphatase SerB compare
PFLU_RS00870 -3.8 -3.2 hypothetical protein compare
PFLU_RS08410 -3.7 -9.5 HTH-type transcriptional regulator CysB compare
PFLU_RS24025 -3.6 -12.1 quinolinate synthase NadA compare
PFLU_RS25640 -3.6 -13.5 ketol-acid reductoisomerase compare
PFLU_RS24765 -3.5 -20.6 2-isopropylmalate synthase compare
PFLU_RS03970 -3.3 -11.2 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS00175 -3.2 -8.9 tryptophan synthase subunit alpha compare
PFLU_RS27365 -3.1 -10.5 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS20540 -3.1 -11.4 phosphoribosylanthranilate isomerase compare
PFLU_RS28385 -3.0 -14.3 homoserine O-acetyltransferase compare
PFLU_RS20510 -2.9 -15.0 O-succinylhomoserine sulfhydrylase compare
PFLU_RS28645 -2.9 -15.3 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS18505 -2.8 -6.6 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS20515 -2.8 -5.7 amidophosphoribosyltransferase compare
PFLU_RS29880 -2.8 -15.2 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS29875 -2.7 -16.8 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS00180 -2.7 -8.2 tryptophan synthase subunit beta compare
PFLU_RS01620 -2.6 -8.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS29885 -2.6 -10.8 LysR family transcriptional regulator compare
PFLU_RS27370 -2.6 -12.8 anthranilate phosphoribosyltransferase compare
PFLU_RS10430 -2.6 -4.9 peptidase compare
PFLU_RS28165 -2.6 -12.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS12975 -2.6 -4.8 DUF934 domain-containing protein compare
PFLU_RS01605 -2.5 -8.1 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS18530 -2.5 -1.7 DNA translocase FtsK compare
PFLU_RS12980 -2.5 -7.8 nitrite/sulfite reductase compare
PFLU_RS04470 -2.5 -11.4 histidinol dehydrogenase compare
PFLU_RS01625 -2.4 -2.8 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS03995 -2.4 -2.3 hypothetical protein compare
PFLU_RS09055 -2.4 -3.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS23305 -2.4 -11.0 arginine N-succinyltransferase compare
PFLU_RS23585 -2.4 -8.8 GntP family permease compare
PFLU_RS31840 -2.4 -1.9 hypothetical protein compare
PFLU_RS21575 -2.3 -3.0 pyrimidine/purine nucleoside phosphorylase compare
PFLU_RS23310 -2.3 -9.4 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS28390 -2.3 -9.2 methionine biosynthesis protein MetW compare
PFLU_RS24205 -2.3 -2.2 DNA binding protein compare
PFLU_RS24330 -2.2 -2.6 phosphogluconate dehydratase compare
PFLU_RS25645 -2.2 -3.3 acetolactate synthase small subunit compare
PFLU_RS22105 -2.2 -6.0 cysteine synthase CysM compare
PFLU_RS13665 -2.1 -1.6 MarR family transcriptional regulator compare
PFLU_RS29095 -2.1 -16.9 polyphosphate kinase 1 compare
PFLU_RS25735 -2.1 -3.2 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS12445 -2.0 -11.8 TonB-dependent siderophore receptor compare
PFLU_RS07225 -2.0 -13.2 L-aspartate oxidase compare
PFLU_RS01960 -2.0 -1.8 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS23725 -1.9 -5.0 glucose-6-phosphate dehydrogenase compare
PFLU_RS04220 -1.9 -8.0 FadR family transcriptional regulator compare
PFLU_RS07245 -1.9 -7.5 DegQ family serine endoprotease compare
PFLU_RS29310 -1.8 -1.6 accessory factor UbiK family protein compare
PFLU_RS01955 -1.8 -6.7 DUF971 domain-containing protein compare
PFLU_RS08655 -1.8 -2.1 heme ABC transporter permease compare
PFLU_RS27650 -1.8 -8.0 biotin synthase BioB compare
PFLU_RS01610 -1.8 -9.2 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS22070 -1.8 -2.6 phosphoribosylglycinamide formyltransferase compare
PFLU_RS25750 -1.8 -3.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS28325 -1.8 -6.0 energy transducer TonB compare
PFLU_RS18395 -1.8 -1.2 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS29515 -1.7 -9.1 RidA family protein compare
PFLU_RS25360 -1.7 -6.5 glutamate 5-kinase compare
PFLU_RS15610 -1.7 -4.4 helix-turn-helix transcriptional regulator compare
PFLU_RS24325 -1.7 -10.1 glucokinase compare
PFLU_RS01965 -1.7 -1.5 ATP-dependent protease subunit HslV compare
PFLU_RS30160 -1.7 -2.4 ParB/RepB/Spo0J family partition protein compare
PFLU_RS31530 -1.7 -1.4 transposase compare
PFLU_RS19170 -1.6 -3.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS03240 -1.6 -9.8 copper-translocating P-type ATPase compare
PFLU_RS31440 -1.6 -1.8 hypothetical protein compare
PFLU_RS26640 -1.5 -7.6 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS08505 -1.5 -7.0 protease HtpX compare
PFLU_RS25730 -1.5 -9.5 PAS domain S-box protein compare
PFLU_RS13540 -1.5 -2.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS23590 -1.5 -1.9 gluconokinase compare
PFLU_RS02590 -1.5 -6.9 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS08650 -1.5 -1.9 heme exporter protein CcmB compare
PFLU_RS27645 -1.5 -7.1 8-amino-7-oxononanoate synthase compare
PFLU_RS28965 -1.5 -7.7 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS26535 -1.4 -5.4 thiamine phosphate synthase compare
PFLU_RS13750 -1.4 -2.0 hypothetical protein compare
PFLU_RS09980 -1.4 -10.0 peptidase S41 compare
PFLU_RS01900 -1.4 -5.9 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS21300 -1.4 -3.9 cysteine hydrolase compare
PFLU_RS04465 -1.4 -6.2 ATP phosphoribosyltransferase compare
PFLU_RS23220 -1.4 -3.0 tRNA-Arg compare
PFLU_RS27475 -1.4 -3.4 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS04435 -1.4 -4.5 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS24255 -1.4 -7.0 pyruvate kinase compare
PFLU_RS30730 -1.4 -2.4 helix-turn-helix domain-containing protein compare
PFLU_RS01875 -1.3 -1.3 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
PFLU_RS27635 -1.3 -4.4 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS03585 -1.3 -2.4 hypothetical protein compare
PFLU_RS02275 -1.3 -1.3 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS25815 -1.3 -2.2 transcription termination/antitermination protein NusA compare
PFLU_RS02455 -1.3 -1.9 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS07520 -1.3 -1.5 hypothetical protein compare
PFLU_RS28195 -1.3 -6.8 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS07255 -1.3 -3.4 sulfurtransferase TusA family protein compare
PFLU_RS22835 -1.3 -6.2 amidotransferase compare
PFLU_RS31800 -1.3 -2.0 hypothetical protein compare
PFLU_RS00210 -1.3 -1.6 OsmC family protein compare
PFLU_RS05690 -1.3 -1.6 Grx4 family monothiol glutaredoxin compare
PFLU_RS04565 -1.3 -1.2 TMEM165/GDT1 family protein compare
PFLU_RS04505 -1.2 -3.7 hypothetical protein compare
PFLU_RS02670 -1.2 -2.9 hypothetical protein compare
PFLU_RS30800 -1.2 -3.9 ThiF family adenylyltransferase compare
PFLU_RS30345 -1.2 -2.5 DUF2559 family protein compare
PFLU_RS18885 -1.2 -1.8 peptidyl-prolyl cis-trans isomerase compare
PFLU_RS16935 -1.2 -3.1 CoA ester lyase compare
PFLU_RS06650 -1.2 -3.4 DUF2288 domain-containing protein compare
PFLU_RS11850 -1.2 -2.1 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS02130 -1.2 -2.0 glycosyl transferase compare
PFLU_RS18655 -1.2 -1.1 NADH-quinone oxidoreductase subunit J compare
PFLU_RS28655 -1.2 -7.8 HAD family hydrolase compare
PFLU_RS03665 -1.2 -4.2 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS22095 -1.2 -9.2 GTP diphosphokinase compare
PFLU_RS23745 -1.2 -5.6 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC compare
PFLU_RS28470 -1.2 -3.5 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
PFLU_RS18700 -1.2 -1.7 hypothetical protein compare
PFLU_RS01895 -1.2 -4.2 phosphoribosyl-ATP diphosphatase compare
PFLU_RS23755 -1.2 -7.5 sugar ABC transporter permease compare
PFLU_RS04330 -1.1 -8.9 TIGR02099 family protein compare
PFLU_RS25760 -1.1 -2.8 glucose-6-phosphate isomerase compare
PFLU_RS28420 -1.1 -4.8 thiazole synthase compare
PFLU_RS08660 -1.1 -1.6 heme exporter protein CcmD compare
PFLU_RS30555 -1.1 -1.4 hypothetical protein compare
PFLU_RS13010 -1.1 -3.4 Fe-S biogenesis protein NfuA compare
PFLU_RS24090 -1.1 -0.8 Holliday junction branch migration protein RuvA compare
PFLU_RS24160 -1.1 -4.1 HAMP domain-containing protein compare
PFLU_RS05230 -1.1 -3.4 DNA polymerase III subunit chi compare
PFLU_RS23070 -1.1 -1.3 50S ribosomal protein L32 compare
PFLU_RS07275 -1.1 -2.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS05965 -1.1 -1.2 hypothetical protein compare
PFLU_RS23750 -1.1 -6.4 carbohydrate ABC transporter permease compare
PFLU_RS13640 -1.1 -2.0 isochorismatase family protein compare
PFLU_RS14810 -1.1 -1.8 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS18595 -1.1 -2.8 cupin domain-containing protein compare
PFLU_RS24085 -1.1 -0.7 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS25740 -1.1 -3.6 polynucleotide adenylyltransferase PcnB compare
PFLU_RS18585 -1.0 -1.2 high frequency lysogenization protein HflD compare
PFLU_RS12450 -1.0 -6.2 cyclic peptide export ABC transporter compare
PFLU_RS11760 -1.0 -2.4 GlxA family transcriptional regulator compare
PFLU_RS05630 -1.0 -1.5 amino acid ABC transporter ATP-binding protein compare
PFLU_RS24785 -1.0 -6.0 outer membrane protein assembly factor BamB compare
PFLU_RS24320 -1.0 -3.2 response regulator transcription factor compare
PFLU_RS25205 -1.0 -2.9 cytochrome o ubiquinol oxidase subunit IV compare
PFLU_RS03765 -1.0 -5.7 sulfate adenylyltransferase subunit CysD compare
PFLU_RS08125 -1.0 -1.9 integration host factor subunit beta compare
PFLU_RS21740 -1.0 -4.0 Hpt domain-containing protein compare
PFLU_RS20405 -1.0 -3.6 carbon storage regulator CsrA compare
PFLU_RS29290 -1.0 -2.3 hypothetical protein compare
PFLU_RS18755 -1.0 -4.5 TetR/AcrR family transcriptional regulator compare
PFLU_RS29550 -1.0 -3.4 ATP-dependent DNA helicase RecG compare
PFLU_RS12915 -1.0 -2.6 methyltransferase domain-containing protein compare
PFLU_RS19420 -1.0 -3.6 sigma-70 family RNA polymerase sigma factor compare
PFLU_RS17060 -1.0 -1.8 monooxygenase compare
PFLU_RS26530 -1.0 -6.6 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFLU_RS06320 -1.0 -2.3 OmpH family outer membrane protein compare
PFLU_RS18125 -0.9 -2.2 ABC transporter ATP-binding protein compare
PFLU_RS17545 -0.9 -0.7 DUF465 domain-containing protein compare
PFLU_RS23065 -0.9 -5.5 phosphate acyltransferase PlsX compare
PFLU_RS01615 -0.9 -2.8 DUF2164 domain-containing protein compare
PFLU_RS22740 -0.9 -2.6 phosphoadenylyl-sulfate reductase compare
PFLU_RS23885 -0.9 -2.1 transposase compare
PFLU_RS12395 -0.9 -1.9 zinc ribbon domain-containing protein compare
PFLU_RS01670 -0.9 -4.5 protein-export chaperone SecB compare
PFLU_RS30790 -0.9 -2.0 hypothetical protein compare
PFLU_RS31100 -0.9 -2.5 preprotein translocase subunit SecG compare
PFLU_RS25120 -0.9 -2.0 response regulator compare
PFLU_RS18250 -0.9 -2.3 DUF2160 domain-containing protein compare
PFLU_RS02430 -0.9 -6.1 phosphomethylpyrimidine synthase ThiC compare
PFLU_RS15810 -0.9 -1.8 hypothetical protein compare
PFLU_RS19160 -0.9 -4.7 endopeptidase La compare
PFLU_RS31650 -0.9 -2.2 hypothetical protein compare
PFLU_RS25215 -0.9 -4.7 cytochrome o ubiquinol oxidase subunit I compare
PFLU_RS07645 -0.9 -2.9 hypothetical protein compare
PFLU_RS26175 -0.8 -4.5 NADP-specific glutamate dehydrogenase compare
PFLU_RS15830 -0.8 -1.7 His-Xaa-Ser system protein HxsD compare
PFLU_RS19050 -0.8 -2.4 spore coat protein U domain-containing protein compare
PFLU_RS29065 -0.8 -0.9 amino acid ABC transporter ATP-binding protein compare
PFLU_RS27910 -0.8 -1.3 helix-turn-helix transcriptional regulator compare
PFLU_RS11870 -0.8 -2.3 type II secretion system protein GspG compare
PFLU_RS20390 -0.8 -2.2 DUF1654 domain-containing protein compare
PFLU_RS21315 -0.8 -3.2 GTP cyclohydrolase I FolE compare
PFLU_RS28320 -0.8 -0.9 glutathione synthase compare
PFLU_RS07785 -0.8 -4.5 VacJ family lipoprotein compare
PFLU_RS20335 -0.8 -1.9 hypothetical protein compare
PFLU_RS07230 -0.8 -4.6 RNA polymerase sigma factor RpoE compare
PFLU_RS23460 -0.8 -1.6 antibiotic biosynthesis monooxygenase compare
PFLU_RS30165 -0.8 -4.1 ParA family protein compare
PFLU_RS31275 -0.8 -1.2 hypothetical protein compare
PFLU_RS11885 -0.8 -1.2 type II secretion system protein M compare
PFLU_RS21360 -0.8 -1.0 MarR family transcriptional regulator compare
PFLU_RS06710 -0.8 -3.0 hypothetical protein compare
PFLU_RS19515 -0.8 -2.7 sugar ABC transporter ATP-binding protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25-INTG in no stress control experiments

For no stress control D-Glucose across organisms