Experiment set14IT070 for Klebsiella michiganensis M5al

Compare to:

LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL

200 most important genes:

  gene name fitness t score description  
BWI76_RS21350 -5.3 -5.1 anti-RNA polymerase sigma factor SigE compare
BWI76_RS01095 -4.8 -2.6 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS26460 -4.6 -3.2 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS26455 -4.5 -2.0 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS05260 -4.5 -1.5 chaperone compare
BWI76_RS17975 -4.5 -5.3 tail-specific protease compare
BWI76_RS26440 -4.3 -1.4 hypothetical protein compare
BWI76_RS26730 -4.2 -8.2 inner membrane protein YhjD compare
BWI76_RS08520 -4.2 -2.3 colicin transporter TolQ compare
BWI76_RS23265 -4.1 -1.8 hypothetical protein compare
BWI76_RS05120 -4.1 -7.8 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS25065 -3.9 -3.4 polyribonucleotide nucleotidyltransferase compare
BWI76_RS11155 -3.9 -2.3 penicillin-binding protein activator LpoB compare
BWI76_RS09615 -3.7 -3.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
BWI76_RS05015 -3.7 -2.3 transcriptional regulator compare
BWI76_RS21070 -3.6 -2.0 outer membrane protein assembly factor BamB compare
BWI76_RS25335 -3.5 -1.9 stringent starvation protein A compare
BWI76_RS05075 -3.3 -1.0 type II secretion system protein GspG compare
BWI76_RS19905 -3.1 -5.5 OmpK36 porin compare
BWI76_RS21075 -3.0 -1.6 membrane protein compare
BWI76_RS01080 -3.0 -7.4 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS19010 -3.0 -2.0 polysaccharide pyruvyl transferase yvff compare
BWI76_RS07465 -3.0 -1.3 TetR family transcriptional regulator compare
BWI76_RS01110 -3.0 -6.3 TDP-fucosamine acetyltransferase compare
BWI76_RS00720 -2.9 -1.8 DNA-binding response regulator compare
BWI76_RS09335 -2.9 -1.3 baseplate assembly protein W compare
BWI76_RS04715 -2.8 -1.7 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS25060 -2.8 -4.3 lipoprotein NlpI compare
BWI76_RS16965 -2.8 -2.5 murein lipoprotein compare
BWI76_RS01800 -2.8 -1.9 glucose-6-phosphate isomerase compare
BWI76_RS08535 -2.7 -1.4 translocation protein TolB compare
BWI76_RS01135 -2.7 -4.2 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS00875 -2.7 -5.1 DNA-binding transcriptional regulator FabR compare
BWI76_RS24605 -2.7 -4.1 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS17980 -2.7 -4.1 RNA chaperone ProQ compare
BWI76_RS26670 -2.6 -7.5 two-component sensor histidine kinase compare
BWI76_RS08530 -2.6 -1.5 protein TolA compare
BWI76_RS25920 -2.6 -1.7 peptidylprolyl isomerase compare
BWI76_RS26620 -2.6 -0.8 Fe-S biogenesis protein NfuA compare
BWI76_RS22755 -2.6 -4.1 phosphoadenosine phosphosulfate reductase compare
BWI76_RS09760 -2.5 -3.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS01125 -2.5 -4.9 4-alpha-L-fucosyltransferase compare
BWI76_RS10935 -2.5 -3.9 glucan biosynthesis glucosyltransferase H compare
BWI76_RS24600 -2.5 -2.2 dihydroxyacetone kinase compare
BWI76_RS09735 -2.5 -4.8 formate acetyltransferase compare
BWI76_RS07510 -2.4 -2.5 hypothetical protein compare
BWI76_RS21370 -2.4 -1.0 ATP-dependent RNA helicase SrmB compare
BWI76_RS02775 -2.3 -5.8 outer membrane protein assembly factor compare
BWI76_RS08525 -2.3 -2.1 colicin transporter compare
BWI76_RS21570 -2.3 -1.8 RnfH family protein compare
BWI76_RS00240 -2.3 -1.4 FMN-binding protein MioC compare
BWI76_RS09970 -2.3 -0.9 porin OmpA compare
BWI76_RS01870 -2.3 -2.9 diacylglycerol kinase compare
BWI76_RS08040 -2.2 -2.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
BWI76_RS19920 -2.2 -7.7 hybrid sensor histidine kinase/response regulator compare
BWI76_RS08020 -2.2 -4.9 serine-type D-Ala-D-Ala carboxypeptidase compare
BWI76_RS24580 -2.2 -3.5 PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR compare
BWI76_RS05350 -2.2 -7.9 Rcs stress response system protein RcsF compare
BWI76_RS02780 -2.2 -10.0 translocation and assembly module TamB compare
BWI76_RS05915 -2.2 -2.9 helix-turn-helix transcriptional regulator compare
BWI76_RS04305 -2.2 -1.2 molecular chaperone DnaJ compare
BWI76_RS26665 -2.1 -3.2 DNA-binding response regulator compare
BWI76_RS23360 -2.0 -1.2 diaminopimelate decarboxylase compare
BWI76_RS19840 -2.0 -0.6 hypothetical protein compare
BWI76_RS06520 -2.0 -4.2 trigger factor compare
BWI76_RS27820 -2.0 -0.8 ilvB operon leader peptide IvbL compare
BWI76_RS20360 -2.0 -0.9 cell division protein DedD compare
BWI76_RS20720 -2.0 -1.7 hypothetical protein compare
BWI76_RS02530 -2.0 -1.3 tRNA dimethylallyltransferase compare
BWI76_RS19910 -2.0 -9.6 phosphotransferase RcsD compare
BWI76_RS25700 -2.0 -4.3 heavy metal-responsive transcriptional regulator compare
BWI76_RS09730 -2.0 -0.8 pyruvate formate lyase 1-activating protein compare
BWI76_RS14770 -1.9 -1.2 PTS IIA 2 domain protein compare
BWI76_RS09670 -1.9 -2.8 recombination factor protein RarA compare
BWI76_RS24740 -1.9 -2.6 GntR family transcriptional regulator compare
BWI76_RS15825 -1.8 -0.9 hypothetical protein compare
BWI76_RS19770 -1.8 -1.0 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS25070 -1.8 -1.3 hypothetical protein compare
BWI76_RS00180 -1.8 -0.8 F0F1 ATP synthase subunit epsilon compare
BWI76_RS01115 -1.8 -2.0 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS11275 -1.8 -4.8 sensor protein PhoQ compare
BWI76_RS01090 -1.7 -4.0 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS12145 -1.7 -1.8 hypothetical protein compare
BWI76_RS05555 -1.7 -2.3 Crl family RNA polymerase assembly factor compare
BWI76_RS00345 -1.7 -3.1 protein disulfide oxidoreductase DsbA compare
BWI76_RS22765 -1.7 -7.2 sulfite reductase subunit alpha compare
BWI76_RS16375 -1.7 -2.6 electron transport complex subunit G compare
BWI76_RS26390 -1.7 -6.7 cell division protein FtsX compare
BWI76_RS22645 -1.7 -6.0 RNA polymerase sigma factor RpoS compare
BWI76_RS21345 -1.6 -2.1 sigma-E factor regulatory protein RseB compare
BWI76_RS20490 -1.6 -2.4 hypothetical protein compare
BWI76_RS15110 -1.6 -3.8 putative excinuclease ABC subunit A compare
BWI76_RS24900 -1.6 -1.0 DeoR family transcriptional regulator compare
BWI76_RS23125 -1.6 -2.0 propanediol dehydratase small subunit compare
BWI76_RS24765 -1.6 -2.4 membrane protein compare
BWI76_RS10990 -1.6 -2.4 dihydroorotase compare
BWI76_RS27440 -1.6 -1.1 DNA helicase RecG compare
BWI76_RS26095 -1.6 -0.7 shikimate kinase compare
BWI76_RS10930 -1.6 -5.4 glucan biosynthesis protein G compare
BWI76_RS19035 -1.5 -6.2 dTDP-rhamnosyl transferase compare
BWI76_RS04160 -1.5 -2.1 phosphoserine phosphatase compare
BWI76_RS02680 -1.5 -2.6 EamA family transporter compare
BWI76_RS04645 -1.5 -2.7 3-dehydroquinase compare
BWI76_RS01350 -1.5 -0.6 NAD(P)H-flavin reductase compare
BWI76_RS15115 -1.5 -1.4 MFS transporter compare
BWI76_RS21310 -1.5 -1.1 DNA repair protein RecO compare
BWI76_RS15535 -1.5 -2.1 hypothetical protein compare
BWI76_RS08275 -1.5 -1.6 LexA regulated protein compare
BWI76_RS05835 -1.5 -1.4 gamma-glutamyl-phosphate reductase compare
BWI76_RS07185 -1.5 -0.9 hypothetical protein compare
BWI76_RS07070 -1.4 -3.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS17720 -1.4 -0.4 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS12185 -1.4 -3.2 hypothetical protein compare
BWI76_RS22070 -1.4 -5.4 proline/betaine ABC transporter permease ProW compare
BWI76_RS26775 -1.4 -3.6 endo-1,4-D-glucanase compare
BWI76_RS13595 -1.4 -3.2 transcriptional regulator compare
BWI76_RS16360 -1.4 -1.0 electron transport complex subunit RsxB compare
BWI76_RS23825 -1.4 -6.2 hypothetical protein compare
BWI76_RS15845 -1.4 -1.0 hypothetical protein compare
BWI76_RS00140 -1.4 -1.1 phosphate transport system regulator PhoU compare
BWI76_RS22760 -1.4 -5.5 sulfite reductase subunit beta compare
BWI76_RS14320 -1.4 -1.6 hypothetical protein compare
BWI76_RS12270 -1.4 -2.3 hypothetical protein compare
BWI76_RS13755 -1.4 -1.4 hypothetical protein compare
BWI76_RS00715 -1.3 -0.9 two-component sensor histidine kinase compare
BWI76_RS24770 -1.3 -3.2 hypothetical protein compare
BWI76_RS22420 -1.3 -1.9 LacI family transcriptional regulator compare
BWI76_RS19900 -1.3 -2.2 FAD:protein FMN transferase compare
BWI76_RS01165 -1.3 -4.2 protoheme IX biogenesis protein HemY compare
BWI76_RS21450 -1.3 -1.6 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS26765 -1.3 -6.6 phosphodiesterase compare
BWI76_RS24100 -1.3 -2.3 YggS family pyridoxal phosphate enzyme compare
BWI76_RS01170 -1.3 -2.4 uroporphyrinogen-III C-methyltransferase compare
BWI76_RS01220 -1.3 -3.4 DNA-dependent helicase II compare
BWI76_RS01385 -1.2 -1.7 potassium transporter compare
BWI76_RS04470 -1.2 -6.0 carbamoyl phosphate synthase large subunit compare
BWI76_RS15650 -1.2 -3.2 gp5 compare
BWI76_RS08210 -1.2 -0.7 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS23490 -1.2 -2.9 fimbrial protein compare
BWI76_RS26200 -1.2 -3.5 starch synthase compare
BWI76_RS14005 -1.2 -1.2 TetR family transcriptional regulator compare
BWI76_RS08385 -1.2 -2.0 citrate (Si)-synthase compare
BWI76_RS23830 -1.2 -2.9 hypothetical protein compare
BWI76_RS23285 -1.2 -1.5 hypothetical protein compare
BWI76_RS00400 -1.2 -0.6 glutamine synthetase compare
BWI76_RS09150 -1.2 -2.7 DNA-binding transcriptional repressor DeoR compare
BWI76_RS24850 -1.2 -3.5 DeoR family transcriptional regulator compare
BWI76_RS12285 -1.2 -1.6 hypothetical protein compare
BWI76_RS09640 -1.2 -1.6 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS08380 -1.2 -0.9 endonuclease VIII compare
BWI76_RS20150 -1.2 -1.8 NADH:ubiquinone oxidoreductase subunit J compare
BWI76_RS26470 -1.2 -2.5 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS06535 -1.2 -2.2 endopeptidase La compare
BWI76_RS26175 -1.2 -1.8 DeoR/GlpR family transcriptional regulator compare
BWI76_RS02735 -1.2 -2.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS14300 -1.2 -1.4 hypothetical protein compare
BWI76_RS03345 -1.1 -5.3 prophage P4 integrase compare
BWI76_RS15785 -1.1 -1.4 replication protein compare
BWI76_RS01200 -1.1 -0.7 diaminopimelate epimerase compare
BWI76_RS16910 -1.1 -2.1 2-keto-4-pentenoate hydratase compare
BWI76_RS22940 -1.1 -1.8 DNA-binding transcriptional activator FucR compare
BWI76_RS26395 -1.1 -3.4 cell division protein FtsE compare
BWI76_RS18000 -1.1 -2.9 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
BWI76_RS09305 -1.1 -1.7 hypothetical protein compare
BWI76_RS24910 -1.1 -2.7 rRNA (cytidine-2'-O-)-methyltransferase compare
BWI76_RS21250 -1.1 -3.2 two-component system response regulator GlrR compare
BWI76_RS06780 -1.1 -4.0 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS08360 -1.1 -1.7 LamB/YcsF family protein compare
BWI76_RS15565 -1.1 -2.2 hypothetical protein compare
BWI76_RS23330 -1.1 -2.7 transcriptional regulator GalR compare
BWI76_RS18815 -1.1 -1.4 nitrogenase molybdenum-iron protein alpha chain compare
BWI76_RS01630 -1.1 -0.8 16S ribosomal RNA compare
BWI76_RS22805 -1.1 -4.8 GTP diphosphokinase compare
BWI76_RS01185 -1.1 -1.0 adenylate cyclase compare
BWI76_RS12215 -1.1 -2.9 HNH endonuclease compare
BWI76_RS02550 -1.1 -2.5 protease modulator HflC compare
BWI76_RS22625 -1.1 -0.8 transcriptional regulator compare
BWI76_RS04100 -1.1 -1.9 peptide chain release factor 3 compare
BWI76_RS10305 -1.1 -4.0 transposase compare
BWI76_RS20440 -1.1 -2.5 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS15765 -1.1 -3.2 hypothetical protein compare
BWI76_RS24400 -1.1 -2.2 outer membrane channel protein TolC compare
BWI76_RS11775 -1.1 -1.9 2-deoxy-D-gluconate 3-dehydrogenase compare
BWI76_RS18335 -1.1 -4.4 DNA-binding response regulator compare
BWI76_RS19055 -1.1 -6.5 dTDP-4-dehydrorhamnose 3,5-epimerase compare
BWI76_RS14505 -1.0 -1.5 salicylate synthase Irp9 compare
BWI76_RS12265 -1.0 -3.2 hypothetical protein compare
BWI76_RS24595 -1.0 -1.6 dihydroxyacetone kinase subunit DhaK compare
BWI76_RS21245 -1.0 -2.4 nitrogen regulatory protein P-II compare
BWI76_RS19705 -1.0 -2.5 kinase compare
BWI76_RS22130 -1.0 -1.7 fructose-1-phosphate/6-phosphogluconate phosphatase compare
BWI76_RS09910 -1.0 -6.4 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS18885 -1.0 -2.1 nitrogen fixation regulatory protein compare
BWI76_RS27475 -1.0 -5.2 regulatory protein GntR family protein compare
BWI76_RS05190 -1.0 -3.9 hypothetical protein compare
BWI76_RS09255 -1.0 -1.8 hypothetical protein compare
BWI76_RS24750 -1.0 -2.6 membrane protein compare
BWI76_RS08495 -1.0 -1.8 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS05235 -1.0 -0.6 hypothetical protein compare
BWI76_RS12125 -1.0 -1.9 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For mixed community Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL in Klebsiella michiganensis M5al

For mixed community Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL across organisms