Experiment set14IT070 for Klebsiella michiganensis M5al

Compare to:

LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS00025 +1.9 2.6 hypothetical protein compare
BWI76_RS23895 +1.9 2.3 Xaa-Pro aminopeptidase compare
BWI76_RS14075 +1.8 1.5 TetR family transcriptional regulator compare
BWI76_RS11900 +1.4 1.5 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
BWI76_RS21115 +1.4 2.9 3-mercaptopyruvate sulfurtransferase compare
BWI76_RS14930 +1.3 3.1 hypothetical protein compare
BWI76_RS14775 +1.3 2.7 creatinine amidohydrolase compare
BWI76_RS01585 +1.3 4.9 transcriptional regulator compare
BWI76_RS01935 +1.3 2.4 thiamin phosphate synthase compare
BWI76_RS21275 +1.3 7.4 lytic transglycosylase F compare
BWI76_RS20155 +1.3 1.2 NADH-quinone oxidoreductase subunit I compare
BWI76_RS08825 +1.2 2.2 cyclic pyranopterin monophosphate synthase MoaC compare
BWI76_RS18065 +1.2 2.0 DNA polymerase III subunit theta compare
BWI76_RS18130 +1.2 4.6 zinc ABC transporter substrate-binding protein compare
BWI76_RS09085 +1.2 5.2 molybdopterin molybdenumtransferase MoeA compare
BWI76_RS04955 +1.1 2.0 hypoxanthine phosphoribosyltransferase compare
BWI76_RS03045 +1.1 1.9 hypothetical protein compare
BWI76_RS08765 +1.1 2.7 8-amino-7-oxononanoate synthase compare
BWI76_RS23185 +1.1 2.7 propanediol utilization: polyhedral bodies pduT compare
BWI76_RS26635 +1.1 1.7 hypothetical protein compare
BWI76_RS19845 +1.1 3.0 phosphatase compare
BWI76_RS15215 +1.1 0.9 N-acetyltransferase compare
BWI76_RS27395 +1.1 3.7 hypothetical protein compare
BWI76_RS14800 +1.1 3.1 non-heme chloroperoxidase compare
BWI76_RS11335 +1.1 1.8 tautomerase compare
BWI76_RS14670 +1.1 1.4 hypothetical protein compare
BWI76_RS11780 +1.0 1.1 2-deoxyglucose-6-phosphatase compare
BWI76_RS10840 +1.0 3.3 membrane protein compare
BWI76_RS14825 +1.0 1.8 dienelactone hydrolase family protein compare
BWI76_RS09455 +1.0 1.9 YbjN domain-containing protein compare
BWI76_RS01240 +1.0 3.9 phospholipase A compare
BWI76_RS18165 +1.0 1.4 NUDIX pyrophosphatase compare
BWI76_RS07730 +1.0 0.7 iron-enterobactin transporter membrane protein compare
BWI76_RS16970 +1.0 4.8 murein L,D-transpeptidase compare
BWI76_RS13215 +1.0 1.7 type I glyceraldehyde-3-phosphate dehydrogenase compare
BWI76_RS25220 +1.0 2.3 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS19310 +1.0 2.7 ABC transporter permease compare
BWI76_RS15940 +1.0 2.1 DMSO reductase maturation protein DsmD compare
BWI76_RS16000 +1.0 1.6 multidrug transporter subunit MdtI compare
BWI76_RS07985 +1.0 1.0 fluoride ion transporter CrcB compare
BWI76_RS15975 +1.0 0.8 hypothetical protein compare
BWI76_RS18455 +1.0 0.9 tRNA-Ser compare
BWI76_RS00865 +1.0 2.6 DNA-binding transcriptional regulator OxyR compare
BWI76_RS19330 +0.9 0.8 HAD family hydrolase compare
BWI76_RS04895 +0.9 1.3 hypothetical protein compare
BWI76_RS12825 +0.9 2.5 hypothetical protein compare
BWI76_RS13095 +0.9 2.1 phenylacetate-CoA oxygenase subunit PaaB compare
BWI76_RS11750 +0.9 2.1 chitooligosaccharide deacetylase compare
BWI76_RS12875 +0.9 1.7 bifunctional deaminase-reductase compare
BWI76_RS26405 +0.9 1.8 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS10835 +0.9 1.1 hypothetical protein compare
BWI76_RS11515 +0.9 1.7 peptide-methionine (R)-S-oxide reductase compare
BWI76_RS07595 +0.9 1.9 putative oxidoreductase compare
BWI76_RS20795 +0.9 1.3 ethanolamine catabolic microcompartment shell protein EutN compare
BWI76_RS25545 +0.9 3.3 hypothetical protein compare
BWI76_RS10530 +0.9 2.2 GntR family transcriptional regulator with compare
BWI76_RS07725 +0.9 1.1 iron-enterobactin transporter permease compare
BWI76_RS20230 +0.9 1.3 hypothetical protein compare
BWI76_RS16210 +0.9 0.8 hypothetical protein compare
BWI76_RS02625 +0.9 3.5 PTS ascorbate transporter subunit IIB compare
BWI76_RS20900 +0.9 1.0 outer membrane protein assembly factor BamC compare
BWI76_RS23250 +0.9 1.7 hypothetical protein compare
BWI76_RS16760 +0.9 2.1 lipase compare
BWI76_RS17070 +0.8 1.8 phosphoenolpyruvate synthase regulatory protein compare
BWI76_RS06125 +0.8 4.4 D-alanine--D-alanine ligase A compare
BWI76_RS08820 +0.8 2.5 molybdenum cofactor biosynthesis protein compare
BWI76_RS04060 +0.8 1.2 hypothetical protein compare
BWI76_RS08835 +0.8 1.6 molybdopterin guanine dinucleotide biosynthesis protein MoaE compare
BWI76_RS17190 +0.8 1.1 TonB system transport protein TonB compare
BWI76_RS06400 +0.8 1.8 oxidative-stress-resistance chaperone compare
BWI76_RS03105 +0.8 0.9 myo-inosose-2 dehydratase compare
BWI76_RS26285 +0.8 2.7 glycerophosphodiester phosphodiesterase compare
BWI76_RS12580 +0.8 2.5 oxidoreductase compare
BWI76_RS08815 +0.8 4.2 cyclic pyranopterin phosphate synthase compare
BWI76_RS07780 +0.8 1.0 hypothetical protein compare
BWI76_RS26480 +0.8 2.9 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
BWI76_RS13315 +0.8 1.5 50S ribosomal protein L7/L12-serine acetyltransferase compare
BWI76_RS17935 +0.8 2.0 DUF2627 domain-containing protein compare
BWI76_RS16795 +0.8 1.9 amino acid ABC transporter ATPase compare
BWI76_RS24155 +0.8 3.1 A/G-specific adenine glycosylase compare
BWI76_RS18005 +0.8 3.1 hypothetical protein compare
BWI76_RS18385 +0.8 1.3 hypothetical protein compare
BWI76_RS16160 +0.8 1.7 LysR family transcriptional regulator compare
BWI76_RS20970 +0.8 1.4 phosphoribosylglycinamide formyltransferase compare
BWI76_RS04275 +0.8 3.1 molybdopterin adenylyltransferase compare
BWI76_RS07740 +0.8 1.0 Fe2+-enterobactin ABC transporter substrate-binding protein compare
BWI76_RS23195 +0.8 1.9 ethanolamine utilization protein EutP compare
BWI76_RS13805 +0.8 3.0 inorganic diphosphatase compare
BWI76_RS24720 +0.8 2.1 hypothetical protein compare
BWI76_RS05520 +0.8 2.2 hypothetical protein compare
BWI76_RS16205 +0.8 2.5 NAD(P) transhydrogenase subunit alpha compare
BWI76_RS00330 +0.8 3.6 molybdenum cofactor guanylyltransferase compare
BWI76_RS15985 +0.8 2.5 LysR family transcriptional regulator compare
BWI76_RS15890 +0.8 2.6 Zn-dependent oxidoreductase compare
BWI76_RS05415 +0.7 1.9 LysR family transcriptional regulator compare
BWI76_RS13155 +0.7 2.9 hypothetical protein compare
BWI76_RS12550 +0.7 1.6 hypothetical protein compare
BWI76_RS09710 +0.7 1.9 transketolase compare
BWI76_RS26015 +0.7 1.9 DUF2559 domain-containing protein compare
BWI76_RS11435 +0.7 1.4 hypothetical protein compare
BWI76_RS23025 +0.7 2.6 cobalt ABC transporter substrate-binding protein CbiN compare
BWI76_RS16240 +0.7 2.3 anti-adapter protein IraM compare
BWI76_RS23255 +0.7 2.7 prepilin-type cleavage/methylation domain-containing protein compare
BWI76_RS08315 +0.7 1.6 K+-transporting ATPase subunit B compare
BWI76_RS16660 +0.7 2.9 SfnB family sulfur acquisition oxidoreductase compare
BWI76_RS16300 +0.7 1.9 bifunctional beta-cystathionase/maltose regulon regulatory protein compare
BWI76_RS16170 +0.7 2.6 amidohydrolase compare
BWI76_RS23710 +0.7 2.9 3-keto-2-deoxy-D-ribonyl-CoA thiolase (from data) compare
BWI76_RS12625 +0.7 3.1 isoflavone reductase compare
BWI76_RS19240 +0.7 1.3 ABC transporter substrate-binding protein compare
BWI76_RS24110 +0.7 0.8 YggU family protein compare
BWI76_RS27670 +0.7 1.8 LysR family transcriptional regulator compare
BWI76_RS24150 +0.7 3.3 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
BWI76_RS16330 +0.7 1.1 oxidoreductase compare
BWI76_RS03040 +0.7 2.4 leucyl aminopeptidase compare
BWI76_RS18055 +0.7 1.5 copper resistance protein D compare
BWI76_RS08980 +0.7 1.0 DNA starvation/stationary phase protection protein compare
BWI76_RS07475 +0.7 1.1 DNA-binding transcriptional regulator RamA compare
BWI76_RS08610 +0.7 3.2 galactose-1-epimerase compare
BWI76_RS11700 +0.7 1.1 hypothetical protein compare
BWI76_RS13680 +0.7 2.1 methyl viologen resistance protein SmvA compare
BWI76_RS14780 +0.7 2.2 phosphotriesterase compare
BWI76_RS16055 +0.7 4.0 malonate decarboxylase subunit epsilon compare
BWI76_RS00475 +0.7 3.5 sulfurtransferase FdhD compare
BWI76_RS09440 +0.7 1.6 hypothetical protein compare
BWI76_RS16685 +0.7 2.3 peptide ABC transporter permease compare
BWI76_RS13505 +0.7 2.0 putative receptor compare
BWI76_RS00710 +0.7 0.7 6-N-hydroxylaminopurine resistance protein compare
BWI76_RS21945 +0.7 1.4 LysR family transcriptional regulator compare
BWI76_RS01905 +0.7 1.6 envelope stress response protein PspG compare
BWI76_RS18800 +0.7 2.8 transcriptional regulator compare
BWI76_RS11790 +0.7 1.6 acyl-CoA thioesterase compare
BWI76_RS06540 +0.7 1.7 DNA-binding protein HU-beta compare
BWI76_RS16750 +0.7 3.4 acetolactate synthase compare
BWI76_RS17180 +0.7 1.5 hypothetical protein compare
BWI76_RS00745 +0.7 2.4 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
BWI76_RS19530 +0.7 2.1 YIP1 family protein compare
BWI76_RS12670 +0.6 1.0 DNA polymerase V subunit UmuD compare
BWI76_RS10595 +0.6 3.5 allantoate amidohydrolase compare
BWI76_RS06200 +0.6 1.7 hypothetical protein compare
BWI76_RS17970 +0.6 1.8 zinc metalloprotease HtpX compare
BWI76_RS19405 +0.6 1.5 LysR family transcriptional regulator compare
BWI76_RS08650 +0.6 1.4 molybdate ABC transporter permease compare
BWI76_RS24775 +0.6 3.3 hypothetical protein compare
BWI76_RS20115 +0.6 1.5 hypothetical protein compare
BWI76_RS16220 +0.6 1.0 hypothetical protein compare
BWI76_RS03560 +0.6 2.2 propanediol utilization phosphotransacylase compare
BWI76_RS15050 +0.6 2.0 sugar transporter compare
BWI76_RS20295 +0.6 1.8 dihydroneopterin triphosphate 2'-epimerase compare
BWI76_RS19490 +0.6 1.7 binding-protein-dependent transport system inner membrane protein compare
BWI76_RS09080 +0.6 1.7 molybdopterin-synthase adenylyltransferase MoeB compare
BWI76_RS23595 +0.6 2.7 N-acetyltransferase compare
BWI76_RS22300 +0.6 1.4 hydrogenase 3 maturation endopeptidase HyCI compare
BWI76_RS24080 +0.6 1.3 DUF179 domain-containing protein compare
BWI76_RS15185 +0.6 1.5 N-acetyltransferase compare
BWI76_RS25980 +0.6 1.8 hypothetical protein compare
BWI76_RS01205 +0.6 1.1 DUF484 family protein compare
BWI76_RS26185 +0.6 1.1 thiosulfate sulfurtransferase compare
BWI76_RS22110 +0.6 3.2 putative helix-turn-helix AraC-type transcriptional regulator compare
BWI76_RS07635 +0.6 2.4 Hok/gef cell toxic protein compare
BWI76_RS14045 +0.6 2.4 oxidoreductase compare
BWI76_RS00820 +0.6 1.9 fructose-6-phosphate aldolase compare
BWI76_RS23520 +0.6 0.9 hypothetical protein compare
BWI76_RS02800 +0.6 2.1 ABC transporter compare
BWI76_RS20915 +0.6 3.4 peroxiredoxin compare
BWI76_RS16475 +0.6 2.2 alkene reductase compare
BWI76_RS11255 +0.6 0.8 putrescine/spermidine ABC transporter ATP-binding protein compare
BWI76_RS13425 +0.6 1.8 1-pyrroline dehydrogenase compare
BWI76_RS15270 +0.6 2.3 phenazine biosynthesis protein PhzF family compare
BWI76_RS06250 +0.6 1.7 alpha-glycosidase compare
BWI76_RS13270 +0.6 3.3 membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family compare
BWI76_RS14965 +0.6 2.6 AraC family transcriptional regulator compare
BWI76_RS15090 +0.6 2.9 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase compare
BWI76_RS20520 +0.6 3.2 indolepyruvate decarboxylase compare
BWI76_RS17400 +0.6 0.7 transporter compare
BWI76_RS21885 +0.6 2.6 AP endonuclease, family 2 compare
BWI76_RS20325 +0.6 2.7 histidine/lysine/arginine/ornithine ABC transporter permease HisM compare
BWI76_RS10560 +0.6 2.4 gamma-glutamyltransferase compare
BWI76_RS00575 +0.6 3.3 DNA-binding protein compare
BWI76_RS13405 +0.6 1.8 spermidine/putrescine ABC transporter substrate-binding protein compare
BWI76_RS26875 +0.6 2.1 dipeptide ABC transporter permease DppC compare
BWI76_RS20765 +0.6 2.1 ethanolamine ammonia lyase large subunit compare
BWI76_RS00290 +0.6 2.6 Ribokinase (EC 2.7.1.15) (from data) compare
BWI76_RS24810 +0.6 1.9 hypothetical protein compare
BWI76_RS19585 +0.6 1.0 gentisate 1,2-dioxygenase compare
BWI76_RS17380 +0.6 1.5 nitrate transporter component compare
BWI76_RS22975 +0.6 1.3 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA compare
BWI76_RS23050 +0.6 0.9 cobalt-precorrin-3B C(17)-methyltransferase compare
BWI76_RS07350 +0.6 1.5 alcohol dehydrogenase compare
BWI76_RS02695 +0.6 2.0 peptidyl-prolyl cis-trans isomerase compare
BWI76_RS14415 +0.6 0.8 transcriptional regulator, TetR family protein compare
BWI76_RS14680 +0.6 2.0 SefF compare
BWI76_RS16030 +0.6 2.1 malonate decarboxylase acyl carrier protein compare
BWI76_RS20965 +0.6 1.4 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS03890 +0.6 2.0 hypothetical protein compare
BWI76_RS17065 +0.6 2.5 phosphoenolpyruvate synthase compare
BWI76_RS21365 +0.6 2.6 tRNA (adenosine(37)-N6)-methyltransferase TrmM compare
BWI76_RS22215 +0.6 2.5 PTS sorbitol transporter subunit IIC compare
BWI76_RS11675 +0.6 1.6 arginine N-succinyltransferase compare
BWI76_RS09065 +0.6 1.5 sugar phosphatase SupH compare


Specific Phenotypes

For 2 genes in this experiment

For mixed community Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL in Klebsiella michiganensis M5al

For mixed community Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL across organisms