Experiment set14IT069 for Klebsiella michiganensis M5al

Compare to:

LB 0.5x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS15225 +3.1 11.7 DeoR family transcriptional regulator compare
BWI76_RS01325 +3.0 7.2 twin-arginine translocase subunit TatB compare
BWI76_RS01330 +2.6 8.7 twin-arginine translocase subunit TatC compare
BWI76_RS20925 +2.6 8.3 peptidase M48 compare
BWI76_RS08405 +2.4 8.3 succinate dehydrogenase flavoprotein subunit compare
BWI76_RS06530 +2.4 7.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS23895 +2.3 2.9 Xaa-Pro aminopeptidase compare
BWI76_RS01205 +2.2 5.3 DUF484 family protein compare
BWI76_RS04850 +2.2 6.3 N-acetylmuramoyl-L-alanine amidase compare
BWI76_RS06525 +1.7 5.2 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS26470 +1.7 4.3 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS08395 +1.7 3.3 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS07730 +1.6 1.2 iron-enterobactin transporter membrane protein compare
BWI76_RS00790 +1.5 7.8 bifunctional aspartokinase II/homoserine dehydrogenase II compare
BWI76_RS02995 +1.5 7.5 aspartate carbamoyltransferase compare
BWI76_RS23830 +1.5 7.3 hypothetical protein compare
BWI76_RS03040 +1.5 3.5 leucyl aminopeptidase compare
BWI76_RS11435 +1.5 2.7 hypothetical protein compare
BWI76_RS22870 +1.4 7.2 LOG family protein compare
BWI76_RS20750 +1.4 1.1 carboxysome structural protein EutK compare
BWI76_RS24885 +1.4 1.2 PTS galactitol transporter subunit IIB compare
BWI76_RS23825 +1.3 10.2 hypothetical protein compare
BWI76_RS11275 +1.3 6.3 sensor protein PhoQ compare
BWI76_RS02575 +1.3 5.8 exoribonuclease R compare
BWI76_RS06540 +1.3 2.5 DNA-binding protein HU-beta compare
BWI76_RS27390 +1.3 4.2 ribonuclease PH compare
BWI76_RS07705 +1.3 3.6 enterochelin esterase compare
BWI76_RS15950 +1.3 2.1 dethiobiotin synthase compare
BWI76_RS08765 +1.2 2.0 8-amino-7-oxononanoate synthase compare
BWI76_RS11520 +1.2 1.5 hypothetical protein compare
BWI76_RS16335 +1.2 2.1 division septum protein Blr compare
BWI76_RS01630 +1.2 1.5 16S ribosomal RNA compare
BWI76_RS19375 +1.2 1.6 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BWI76_RS18200 +1.2 4.6 copper homeostasis protein CutC compare
BWI76_RS16190 +1.2 2.4 universal stress protein UspE compare
BWI76_RS14075 +1.2 1.1 TetR family transcriptional regulator compare
BWI76_RS12470 +1.2 2.4 thiosulfate sulfurtransferase PspE compare
BWI76_RS03045 +1.2 2.1 hypothetical protein compare
BWI76_RS25425 +1.2 1.3 arginine repressor compare
BWI76_RS23320 +1.2 1.8 hypothetical protein compare
BWI76_RS19310 +1.1 2.8 ABC transporter permease compare
BWI76_RS16895 +1.1 1.5 3-(3-hydroxy-phenyl)propionate transporter MhpT compare
BWI76_RS27385 +1.1 4.4 orotate phosphoribosyltransferase compare
BWI76_RS16480 +1.1 2.0 lactoylglutathione lyase compare
BWI76_RS08515 +1.1 2.4 acyl-CoA thioesterase YbgC compare
BWI76_RS15230 +1.1 2.9 4-hydroxythreonine-4-phosphate dehydrogenase compare
BWI76_RS22650 +1.1 4.7 lipoprotein NlpD compare
BWI76_RS15975 +1.1 1.0 hypothetical protein compare
BWI76_RS21685 +1.1 1.2 hypothetical protein compare
BWI76_RS23020 +1.1 1.7 cobalamin biosynthesis protein CbiQ compare
BWI76_RS12485 +1.1 3.7 TyrR family transcriptional regulator compare
BWI76_RS26755 +1.1 5.2 peptidase M16 compare
BWI76_RS21375 +1.1 1.0 autonomous glycyl radical cofactor GrcA compare
BWI76_RS25480 +1.1 4.9 ribonuclease E/G compare
BWI76_RS16090 +1.1 2.0 two-component system response regulator DcuR compare
BWI76_RS17065 +1.0 4.8 phosphoenolpyruvate synthase compare
BWI76_RS08390 +1.0 2.7 hypothetical protein compare
BWI76_RS04470 +1.0 5.3 carbamoyl phosphate synthase large subunit compare
BWI76_RS09910 +1.0 7.6 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS15775 +1.0 2.4 replication protein compare
BWI76_RS04465 +1.0 3.0 carbamoyl-phosphate synthase small subunit compare
BWI76_RS16000 +1.0 1.7 multidrug transporter subunit MdtI compare
BWI76_RS11965 +1.0 3.4 orotidine-5'-phosphate decarboxylase compare
BWI76_RS13445 +1.0 1.6 alpha/beta hydrolase compare
BWI76_RS06810 +1.0 1.8 hypothetical protein compare
BWI76_RS16870 +1.0 3.1 LysR family transcriptional regulator compare
BWI76_RS07780 +1.0 1.3 hypothetical protein compare
BWI76_RS10815 +1.0 2.1 iron permease compare
BWI76_RS11790 +1.0 2.5 acyl-CoA thioesterase compare
BWI76_RS15350 +1.0 1.1 hypothetical protein compare
BWI76_RS14935 +1.0 1.3 NIPSNAP family containing protein compare
BWI76_RS20160 +1.0 2.5 NADH-quinone oxidoreductase subunit H compare
BWI76_RS13380 +1.0 2.4 hypothetical protein compare
BWI76_RS23520 +1.0 1.5 hypothetical protein compare
BWI76_RS09610 +0.9 2.7 ATP-dependent Clp protease adaptor ClpS compare
BWI76_RS14775 +0.9 1.5 creatinine amidohydrolase compare
BWI76_RS05790 +0.9 1.2 phage DNA-binding protein compare
BWI76_RS21165 +0.9 1.4 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS16300 +0.9 1.7 bifunctional beta-cystathionase/maltose regulon regulatory protein compare
BWI76_RS04915 +0.9 2.6 hypothetical protein compare
BWI76_RS05640 +0.9 1.6 GntR family transcriptional regulator compare
BWI76_RS08260 +0.9 2.5 LysR family transcriptional regulator compare
BWI76_RS21235 +0.9 0.9 hypothetical protein compare
BWI76_RS18125 +0.9 3.7 murein DD-endopeptidase MepM compare
BWI76_RS12825 +0.9 2.4 hypothetical protein compare
BWI76_RS09870 +0.9 3.0 aromatic amino acid aminotransferase compare
BWI76_RS02225 +0.9 2.1 phosphonate C-P lyase system protein PhnG compare
BWI76_RS18005 +0.9 3.5 hypothetical protein compare
BWI76_RS19845 +0.9 2.6 phosphatase compare
BWI76_RS07725 +0.9 1.1 iron-enterobactin transporter permease compare
BWI76_RS25225 +0.9 3.3 ABC transporter permease compare
BWI76_RS05470 +0.9 6.2 acyl-CoA dehydrogenase compare
BWI76_RS10040 +0.9 2.5 heat-shock protein HspQ compare
BWI76_RS20090 +0.9 2.7 ribonuclease Z compare
BWI76_RS20230 +0.9 1.3 hypothetical protein compare
BWI76_RS18360 +0.9 1.3 aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein compare
BWI76_RS24900 +0.9 1.0 DeoR family transcriptional regulator compare
BWI76_RS26405 +0.9 1.1 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS02520 +0.8 4.5 N-acetylmuramoyl-L-alanine amidase compare
BWI76_RS23050 +0.8 2.3 cobalt-precorrin-3B C(17)-methyltransferase compare
BWI76_RS21980 +0.8 1.4 hypothetical protein compare
BWI76_RS11840 +0.8 3.0 tryptophan synthase subunit alpha compare
BWI76_RS06335 +0.8 2.6 nucleoside-specific channel-forming protein Tsx compare
BWI76_RS11125 +0.8 1.6 metal-dependent hydrolase compare
BWI76_RS11810 +0.8 0.8 outer membrane protein OmpW compare
BWI76_RS02695 +0.8 2.5 peptidyl-prolyl cis-trans isomerase compare
BWI76_RS04175 +0.8 2.5 energy-dependent translational throttle protein EttA compare
BWI76_RS11580 +0.8 1.8 L-asparaginase 1 compare
BWI76_RS26095 +0.8 0.7 shikimate kinase compare
BWI76_RS04955 +0.8 1.3 hypoxanthine phosphoribosyltransferase compare
BWI76_RS11515 +0.8 1.3 peptide-methionine (R)-S-oxide reductase compare
BWI76_RS23915 +0.8 0.8 5-formyltetrahydrofolate cyclo-ligase compare
BWI76_RS04275 +0.8 3.7 molybdopterin adenylyltransferase compare
BWI76_RS01585 +0.8 3.4 transcriptional regulator compare
BWI76_RS20995 +0.8 3.2 RNA degradosome polyphosphate kinase compare
BWI76_RS04010 +0.8 2.1 hypothetical protein compare
BWI76_RS19215 +0.8 1.2 proline-specific peptidase compare
BWI76_RS27940 +0.8 1.3 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
BWI76_RS09565 +0.8 3.7 hybrid-cluster NAD(P)-dependent oxidoreductase compare
BWI76_RS23030 +0.8 1.3 cobalamin biosynthesis protein CbiM compare
BWI76_RS20050 +0.8 1.6 hypothetical protein compare
BWI76_RS17085 +0.8 1.9 hypothetical protein compare
BWI76_RS15940 +0.8 1.0 DMSO reductase maturation protein DsmD compare
BWI76_RS00825 +0.8 3.4 AraC family transcriptional regulator compare
BWI76_RS24260 +0.8 1.9 hypothetical protein compare
BWI76_RS01350 +0.8 0.6 NAD(P)H-flavin reductase compare
BWI76_RS17945 +0.8 1.2 hypothetical protein compare
BWI76_RS20140 +0.8 2.1 NADH-quinone oxidoreductase subunit L compare
BWI76_RS06505 +0.8 3.7 hypothetical protein compare
BWI76_RS15285 +0.8 2.2 stress protection protein MarC compare
BWI76_RS19690 +0.8 1.8 LysR family transcriptional regulator compare
BWI76_RS12780 +0.8 1.3 hypothetical protein compare
BWI76_RS19480 +0.8 2.4 transcriptional regulator compare
BWI76_RS18225 +0.8 1.6 universal stress protein C compare
BWI76_RS01620 +0.8 2.8 hypothetical protein compare
BWI76_RS16160 +0.8 1.7 LysR family transcriptional regulator compare
BWI76_RS00720 +0.8 1.4 DNA-binding response regulator compare
BWI76_RS26185 +0.8 0.8 thiosulfate sulfurtransferase compare
BWI76_RS23005 +0.8 2.3 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
BWI76_RS23195 +0.7 2.2 ethanolamine utilization protein EutP compare
BWI76_RS16115 +0.7 3.3 fumarate hydratase compare
BWI76_RS07475 +0.7 1.3 DNA-binding transcriptional regulator RamA compare
BWI76_RS17735 +0.7 3.8 D-amino acid dehydrogenase small subunit compare
BWI76_RS15015 +0.7 0.9 DUF2132 domain-containing protein compare
BWI76_RS26440 +0.7 0.9 hypothetical protein compare
BWI76_RS00785 +0.7 2.2 cystathionine gamma-synthase compare
BWI76_RS10560 +0.7 2.7 gamma-glutamyltransferase compare
BWI76_RS20190 +0.7 3.2 NADH-quinone oxidoreductase subunit A compare
BWI76_RS09085 +0.7 4.4 molybdopterin molybdenumtransferase MoeA compare
BWI76_RS14805 +0.7 1.2 hypothetical protein compare
BWI76_RS04305 +0.7 0.8 molecular chaperone DnaJ compare
BWI76_RS23810 +0.7 1.7 bifunctional protein-disulfide isomerase/oxidoreductase DsbC compare
BWI76_RS16275 +0.7 1.5 fumarate hydratase FumA compare
BWI76_RS21485 +0.7 3.9 DUF4154 domain-containing protein compare
BWI76_RS06070 +0.7 1.4 taurine transporter ATP-binding subunit compare
BWI76_RS04240 +0.7 1.1 thr operon leader peptide compare
BWI76_RS09590 +0.7 2.4 ATP-dependent OLD family endonuclease compare
BWI76_RS10945 +0.7 2.0 SecY/SecA suppressor protein compare
BWI76_RS23255 +0.7 3.3 prepilin-type cleavage/methylation domain-containing protein compare
BWI76_RS14845 +0.7 1.0 hypothetical protein compare
BWI76_RS26345 +0.7 2.0 branched-chain amino acid ABC transporter permease LivH compare
BWI76_RS18165 +0.7 0.9 NUDIX pyrophosphatase compare
BWI76_RS10975 +0.7 3.3 N-methyltryptophan oxidase compare
BWI76_RS19825 +0.7 3.1 DNA mismatch repair protein MutT compare
BWI76_RS02655 +0.7 1.9 hypothetical protein compare
BWI76_RS25230 +0.7 3.0 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS11950 +0.7 2.3 phosphatidylglycerophosphatase B compare
BWI76_RS16140 +0.7 1.9 3-oxoadipate CoA-transferase compare
BWI76_RS18845 +0.7 1.4 nitrogen fixation protein NifX compare
BWI76_RS23215 +0.7 2.7 N-acetylmuramoyl-L-alanine amidase compare
BWI76_RS18130 +0.7 1.8 zinc ABC transporter substrate-binding protein compare
BWI76_RS19995 +0.7 1.7 IclR family transcriptional regulator compare
BWI76_RS14000 +0.7 2.9 glutamine amidotransferase compare
BWI76_RS08385 +0.7 1.2 citrate (Si)-synthase compare
BWI76_RS22660 +0.7 3.2 5'/3'-nucleotidase SurE compare
BWI76_RS10045 +0.7 1.5 23S rRNA (cytosine(1962)-C(5))-methyltransferase compare
BWI76_RS07920 +0.7 2.3 methionine aminotransferase compare
BWI76_RS22380 +0.7 2.6 6-phospho-beta-glucosidase compare
BWI76_RS21015 +0.7 2.0 LysR family transcriptional regulator compare
BWI76_RS00760 +0.7 2.2 cell division protein FtsN compare
BWI76_RS02630 +0.7 2.7 PTS ascorbate transporter subunit IIA compare
BWI76_RS26285 +0.7 3.8 glycerophosphodiester phosphodiesterase compare
BWI76_RS25420 +0.7 2.6 malate dehydrogenase compare
BWI76_RS10320 +0.7 2.1 alpha-glucosidase/alpha-galactosidase compare
BWI76_RS09530 +0.7 0.9 hypothetical protein compare
BWI76_RS25545 +0.7 1.4 hypothetical protein compare
BWI76_RS07740 +0.6 0.7 Fe2+-enterobactin ABC transporter substrate-binding protein compare
BWI76_RS18800 +0.6 2.7 transcriptional regulator compare
BWI76_RS00325 +0.6 3.6 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
BWI76_RS14825 +0.6 0.9 dienelactone hydrolase family protein compare
BWI76_RS25960 +0.6 1.4 NUDIX hydrolase compare
BWI76_RS15085 +0.6 3.5 3-deoxy-D-arabinose-heptulosonic-7-phosphate synthase compare
BWI76_RS16755 +0.6 2.1 acetoin reductase compare
BWI76_RS25215 +0.6 2.3 phospholipid-binding protein MlaC compare
BWI76_RS13625 +0.6 1.9 hypothetical protein compare
BWI76_RS20155 +0.6 0.7 NADH-quinone oxidoreductase subunit I compare
BWI76_RS25855 +0.6 2.0 bacterioferritin compare
BWI76_RS24140 +0.6 2.6 hypothetical protein compare
BWI76_RS12090 +0.6 1.4 HNH endonuclease compare
BWI76_RS24775 +0.6 3.5 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For mixed community Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL in Klebsiella michiganensis M5al

For mixed community Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL across organisms