Experiment set14IT068 for Ralstonia sp. UNC404CL21Col

Compare to:

Carbon source D-Glucose 10 mM

200 most important genes:

  gene name fitness t score description  
ABZR87_RS13250 -6.9 -4.8 phosphoserine phosphatase SerB compare
ABZR87_RS02160 -6.0 -5.8 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS08630 -5.9 -7.1 dihydroorotase compare
ABZR87_RS14500 -5.9 -14.7 tryptophan synthase subunit beta compare
ABZR87_RS14505 -5.9 -7.0 phosphoribosylanthranilate isomerase compare
ABZR87_RS07360 -5.8 -15.6 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS02570 -5.8 -22.8 glutamate synthase-related protein compare
ABZR87_RS14535 -5.8 -6.8 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS14540 -5.7 -7.7 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS14490 -5.6 -9.4 tryptophan synthase subunit alpha compare
ABZR87_RS16170 -5.6 -3.9 argininosuccinate lyase compare
ABZR87_RS05200 -5.5 -19.4 homoserine O-acetyltransferase compare
ABZR87_RS09465 -5.5 -8.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS02155 -5.2 -10.6 anthranilate phosphoribosyltransferase compare
ABZR87_RS14530 -5.2 -8.0 3-isopropylmalate dehydrogenase compare
ABZR87_RS07380 -5.2 -15.0 FAD/FMN-binding oxidoreductase compare
ABZR87_RS16185 -5.2 -3.6 dCTP deaminase compare
ABZR87_RS00190 -5.1 -11.9 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS02595 -5.1 -12.9 shikimate kinase compare
ABZR87_RS16140 -5.1 -18.7 phosphoenolpyruvate carboxylase compare
ABZR87_RS22970 -5.0 -14.8 cystathionine gamma-synthase family protein compare
ABZR87_RS14950 -5.0 -5.4 acetolactate synthase small subunit compare
ABZR87_RS22920 -4.9 -4.7 phosphogluconate dehydratase compare
ABZR87_RS00185 -4.8 -4.7 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS02565 -4.8 -8.0 glutamate synthase subunit beta compare
ABZR87_RS01810 -4.8 -5.6 glutamate 5-kinase compare
ABZR87_RS13790 -4.7 -13.5 chorismate synthase compare
ABZR87_RS09450 -4.7 -10.9 prephenate dehydratase compare
ABZR87_RS02140 -4.7 -21.5 anthranilate synthase component I compare
ABZR87_RS02640 -4.7 -17.1 diaminopimelate decarboxylase compare
ABZR87_RS14955 -4.6 -7.1 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS00835 -4.6 -5.5 argininosuccinate synthase compare
ABZR87_RS02590 -4.6 -14.6 3-dehydroquinate synthase compare
ABZR87_RS22915 -4.6 -16.6 glucose-6-phosphate dehydrogenase compare
ABZR87_RS00195 -4.5 -6.0 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS02145 -4.5 -3.1 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS00210 -4.4 -11.4 nitrite/sulfite reductase compare
ABZR87_RS00285 -4.3 -4.1 acetylornithine transaminase compare
ABZR87_RS01110 -4.2 -12.0 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS04865 -4.2 -5.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS00200 -4.1 -5.4 phosphoadenylyl-sulfate reductase compare
ABZR87_RS09935 -4.1 -4.8 amino acid aminotransferase compare
ABZR87_RS09445 -4.0 -11.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS12790 -3.9 -4.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS22910 -3.9 -3.2 6-phosphogluconolactonase compare
ABZR87_RS05170 -3.8 -5.2 acetylglutamate kinase compare
ABZR87_RS06770 -3.8 -7.4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS11440 -3.8 -9.8 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS01645 -3.5 -7.1 type II 3-dehydroquinate dehydratase compare
ABZR87_RS13300 -3.4 -11.7 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS05100 -3.3 -8.3 RNA polymerase-binding protein DksA compare
ABZR87_RS08625 -3.2 -2.2 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS16180 -3.1 -5.5 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS05590 -3.1 -2.1 orotate phosphoribosyltransferase compare
ABZR87_RS09515 -3.0 -2.0 cysteine synthase CysM compare
ABZR87_RS00205 -2.9 -2.7 DUF934 domain-containing protein compare
ABZR87_RS07665 -2.9 -12.2 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS02480 -2.8 -3.7 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS00220 -2.7 -10.8 CysB family HTH-type transcriptional regulator compare
ABZR87_RS00435 -2.7 -10.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS10195 -2.6 -3.5 signal peptidase I compare
ABZR87_RS07625 -2.6 -5.0 Holliday junction branch migration protein RuvA compare
ABZR87_RS08695 -2.6 -12.0 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS01605 -2.5 -11.7 shikimate dehydrogenase compare
ABZR87_RS13290 -2.5 -7.8 3-ketoacyl-ACP reductase compare
ABZR87_RS23220 -2.5 -10.3 xylose ABC transporter ATP-binding protein compare
ABZR87_RS11815 -2.4 -12.4 [protein-PII] uridylyltransferase compare
ABZR87_RS12795 -2.3 -7.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS07320 -2.3 -8.5 gluconokinase compare
ABZR87_RS12785 -2.2 -7.2 endopeptidase La compare
ABZR87_RS23225 -2.2 -10.4 sugar ABC transporter permease compare
ABZR87_RS01225 -2.1 -5.7 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS09635 -2.1 -2.2 ribosome small subunit-dependent GTPase A compare
ABZR87_RS08700 -2.0 -8.0 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS13475 -2.0 -8.4 PAS domain S-box protein compare
ABZR87_RS23215 -2.0 -6.6 D-xylose ABC transporter substrate-binding protein compare
ABZR87_RS10785 -1.9 -8.1 exodeoxyribonuclease V subunit beta compare
ABZR87_RS00875 -1.8 -5.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS14115 -1.8 -5.6 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS01690 -1.8 -1.6 collagen-like triple helix repeat-containing protein compare
ABZR87_RS10820 -1.7 -6.7 LysR substrate-binding domain-containing protein compare
ABZR87_RS10240 -1.7 -3.2 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS02575 -1.7 -6.7 transposase compare
ABZR87_RS15440 -1.7 -3.9 ribonuclease G compare
ABZR87_RS00970 -1.7 -2.0 molecular chaperone DnaJ compare
ABZR87_RS07635 -1.7 -3.7 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS23230 -1.6 -8.8 NAD(P)-dependent oxidoreductase compare
ABZR87_RS16250 -1.6 -5.0 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS10780 -1.6 -5.1 PD-(D/E)XK nuclease family protein compare
ABZR87_RS11065 -1.6 -7.7 nitrogen regulation protein NR(II) compare
ABZR87_RS05065 -1.6 -5.8 tyrosine recombinase XerC compare
ABZR87_RS00215 -1.6 -3.9 sulfite exporter TauE/SafE family protein compare
ABZR87_RS07620 -1.6 -3.8 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS10400 -1.5 -4.2 hypothetical protein compare
ABZR87_RS19095 -1.4 -3.7 gluconate:H+ symporter compare
ABZR87_RS00795 -1.4 -5.3 site-specific tyrosine recombinase XerD compare
ABZR87_RS14495 -1.4 -3.3 site-specific DNA-methyltransferase compare
ABZR87_RS16960 -1.4 -4.9 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS07050 -1.3 -1.5 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS13285 -1.3 -8.2 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS06715 -1.3 -3.7 PTS sugar transporter subunit IIA compare
ABZR87_RS05205 -1.3 -5.5 methionine biosynthesis protein MetW compare
ABZR87_RS13175 -1.3 -2.1 tRNA-Leu compare
ABZR87_RS11925 -1.3 -8.9 phosphoenolpyruvate synthase compare
ABZR87_RS05350 -1.2 -4.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS09460 -1.1 -3.9 prephenate dehydrogenase compare
ABZR87_RS11070 -1.1 -6.2 nitrogen regulation protein NR(I) compare
ABZR87_RS13645 -1.1 -1.1 hypothetical protein compare
ABZR87_RS06845 -1.1 -7.2 heme o synthase compare
ABZR87_RS23210 -1.1 -5.8 carbohydrate porin compare
ABZR87_RS11555 -1.1 -5.6 CysB family HTH-type transcriptional regulator compare
ABZR87_RS03915 -1.1 -8.0 UvrD-helicase domain-containing protein compare
ABZR87_RS01685 -1.1 -5.8 histone H1-like DNA-binding protein compare
ABZR87_RS06355 -1.1 -5.5 SPOR domain-containing protein compare
ABZR87_RS14380 -1.1 -4.3 glutamate racemase compare
ABZR87_RS10620 -1.1 -1.7 serine O-acetyltransferase compare
ABZR87_RS20690 -1.0 -1.7 recombinase-like helix-turn-helix domain-containing protein compare
ABZR87_RS08640 -1.0 -4.4 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS16125 -1.0 -3.9 heme biosynthesis protein HemY compare
ABZR87_RS14235 -1.0 -5.0 formyltetrahydrofolate deformylase compare
ABZR87_RS12295 -1.0 -3.5 muconate/chloromuconate family cycloisomerase compare
ABZR87_RS07430 -1.0 -2.7 FmdB family zinc ribbon protein compare
ABZR87_RS07645 -1.0 -2.6 Fis family transcriptional regulator compare
ABZR87_RS04785 -1.0 -5.5 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS15505 -1.0 -1.4 DNA polymerase III subunit alpha compare
ABZR87_RS10085 -1.0 -1.9 Rne/Rng family ribonuclease compare
ABZR87_RS11435 -1.0 -3.5 Mth938-like domain-containing protein compare
ABZR87_RS05085 -1.0 -7.5 lactonase family protein compare
ABZR87_RS04125 -1.0 -4.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS07035 -1.0 -6.3 RNase adapter RapZ compare
ABZR87_RS06705 -0.9 -6.9 glutamate--cysteine ligase compare
ABZR87_RS02150 -0.9 -2.2 lysozyme inhibitor LprI family protein compare
ABZR87_RS15705 -0.9 -1.9 UvrD-helicase domain-containing protein compare
ABZR87_RS14330 -0.9 -1.0 hypothetical protein compare
ABZR87_RS14510 -0.9 -4.2 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS05140 -0.9 -1.2 ATP-binding protein compare
ABZR87_RS21095 -0.9 -1.0 TRAP transporter small permease compare
ABZR87_RS06645 -0.9 -1.6 TlpA disulfide reductase family protein compare
ABZR87_RS05015 -0.9 -4.2 penicillin-binding protein 2 compare
ABZR87_RS08980 -0.9 -2.5 cell envelope integrity protein TolA compare
ABZR87_RS19105 -0.9 -2.5 amidohydrolase family protein compare
ABZR87_RS14415 -0.9 -1.5 hemin uptake protein HemP compare
ABZR87_RS11010 -0.8 -1.9 oxidative damage protection protein compare
ABZR87_RS07700 -0.8 -1.0 peptidylprolyl isomerase compare
ABZR87_RS05145 -0.8 -1.6 copper chaperone PCu(A)C compare
ABZR87_RS11245 -0.8 -3.5 translational GTPase TypA compare
ABZR87_RS08985 -0.8 -5.4 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS07675 -0.8 -5.7 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS18630 -0.8 -2.4 class II fumarate hydratase compare
ABZR87_RS01615 -0.8 -0.9 RNB domain-containing ribonuclease compare
ABZR87_RS12800 -0.8 -4.2 trigger factor compare
ABZR87_RS08505 -0.8 -1.6 CpaE family protein compare
ABZR87_RS08970 -0.8 -4.1 protein TolQ compare
ABZR87_RS01555 -0.8 -0.8 barstar family protein compare
ABZR87_RS23035 -0.8 -1.5 PIG-L family deacetylase compare
ABZR87_RS10395 -0.8 -3.9 single-stranded-DNA-specific exonuclease RecJ compare
ABZR87_RS01270 -0.7 -4.8 ATP-dependent DNA helicase RecG compare
ABZR87_RS10175 -0.7 -3.9 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS05275 -0.7 -3.0 winged helix-turn-helix domain-containing protein compare
ABZR87_RS05025 -0.7 -2.1 rod shape-determining protein MreC compare
ABZR87_RS04860 -0.7 -1.7 phage holin family protein compare
ABZR87_RS10865 -0.7 -3.6 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABZR87_RS11370 -0.7 -2.7 DUF47 domain-containing protein compare
ABZR87_RS14890 -0.7 -0.7 preprotein translocase subunit SecG compare
ABZR87_RS12150 -0.7 -2.3 6-carboxytetrahydropterin synthase QueD compare
ABZR87_RS11125 -0.7 -3.6 cell division protein ZapE compare
ABZR87_RS01780 -0.7 -1.1 MarC family protein compare
ABZR87_RS17565 -0.7 -1.3 helix-turn-helix transcriptional regulator compare
ABZR87_RS06400 -0.7 -4.8 response regulator transcription factor compare
ABZR87_RS01430 -0.7 -5.3 LysR family transcriptional regulator compare
ABZR87_RS12775 -0.7 -3.0 tRNA-Val compare
ABZR87_RS17505 -0.7 -2.3 (2Fe-2S)-binding protein compare
ABZR87_RS13495 -0.7 -3.5 exodeoxyribonuclease III compare
ABZR87_RS01800 -0.6 -2.9 RNA pyrophosphohydrolase compare
ABZR87_RS07965 -0.6 -3.7 recombinase RecA compare
ABZR87_RS21110 -0.6 -1.9 GntR family transcriptional regulator compare
ABZR87_RS16735 -0.6 -5.4 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS21795 -0.6 -3.7 NUDIX domain-containing protein compare
ABZR87_RS11770 -0.6 -3.0 succinyldiaminopimelate transaminase compare
ABZR87_RS13010 -0.6 -0.7 GPW/gp25 family protein compare
ABZR87_RS12100 -0.6 -1.2 DsbA family protein compare
ABZR87_RS01980 -0.6 -1.5 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS04240 -0.6 -1.9 heavy-metal-associated domain-containing protein compare
ABZR87_RS02385 -0.6 -3.4 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS21825 -0.6 -2.3 metalloregulator ArsR/SmtB family transcription factor compare
ABZR87_RS11375 -0.6 -4.0 inorganic phosphate transporter compare
ABZR87_RS09625 -0.6 -4.4 CobD/CbiB family protein compare
ABZR87_RS16855 -0.6 -2.3 chemotaxis protein CheC compare
ABZR87_RS18910 -0.6 -1.3 DUF2239 family protein compare
ABZR87_RS07005 -0.6 -1.1 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS11015 -0.6 -3.4 amino-acid N-acetyltransferase compare
ABZR87_RS07020 -0.6 -4.4 dynamin-like GTPase family protein compare
ABZR87_RS13350 -0.6 -2.6 potassium transporter Kup compare
ABZR87_RS09895 -0.6 -0.7 DUF1841 family protein compare
ABZR87_RS06725 -0.6 -5.3 phosphoenolpyruvate--protein phosphotransferase compare
ABZR87_RS16720 -0.6 -1.1 collagen-like triple helix repeat-containing protein compare
ABZR87_RS21285 -0.6 -1.3 TetR/AcrR family transcriptional regulator compare
ABZR87_RS03440 -0.6 -3.6 type II secretion system protein GspM compare
ABZR87_RS11755 -0.6 -0.9 arsenate reductase compare
ABZR87_RS06760 -0.6 -2.5 glutaredoxin 3 compare


Specific Phenotypes

None in this experiment

For Ralstonia sp. UNC404CL21Col in carbon source experiments

For carbon source D-Glucose across organisms