Experiment set14IT067 for Klebsiella michiganensis M5al

Compare to:

LB 0.5x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL

200 most important genes:

  gene name fitness t score description  
BWI76_RS01095 -4.8 -2.2 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS26460 -4.7 -3.2 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS26455 -4.6 -1.7 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS08520 -4.3 -1.9 colicin transporter TolQ compare
BWI76_RS23265 -4.2 -1.6 hypothetical protein compare
BWI76_RS05235 -3.8 -1.0 hypothetical protein compare
BWI76_RS21350 -3.7 -3.3 anti-RNA polymerase sigma factor SigE compare
BWI76_RS05570 -3.7 -1.0 hypothetical protein compare
BWI76_RS05015 -3.7 -1.9 transcriptional regulator compare
BWI76_RS09760 -3.7 -2.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS21070 -3.7 -1.7 outer membrane protein assembly factor BamB compare
BWI76_RS08530 -3.6 -1.3 protein TolA compare
BWI76_RS25335 -3.5 -1.6 stringent starvation protein A compare
BWI76_RS21345 -3.4 -2.2 sigma-E factor regulatory protein RseB compare
BWI76_RS22755 -3.4 -4.0 phosphoadenosine phosphosulfate reductase compare
BWI76_RS09670 -3.4 -2.9 recombination factor protein RarA compare
BWI76_RS19770 -3.4 -1.2 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS13560 -3.3 -0.9 amino acid ABC transporter substrate-binding subunit compare
BWI76_RS05260 -3.3 -1.2 chaperone compare
BWI76_RS05915 -3.2 -3.1 helix-turn-helix transcriptional regulator compare
BWI76_RS08525 -3.2 -1.3 colicin transporter compare
BWI76_RS01385 -3.1 -2.0 potassium transporter compare
BWI76_RS07465 -3.0 -1.1 TetR family transcriptional regulator compare
BWI76_RS22690 -3.0 -2.4 adenylyl-sulfate kinase compare
BWI76_RS06535 -2.9 -2.0 endopeptidase La compare
BWI76_RS15825 -2.8 -1.0 hypothetical protein compare
BWI76_RS08535 -2.8 -1.2 translocation protein TolB compare
BWI76_RS08210 -2.8 -1.0 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS21580 -2.7 -1.2 SsrA-binding protein compare
BWI76_RS09645 -2.7 -0.7 thioredoxin-disulfide reductase compare
BWI76_RS02725 -2.7 -1.0 HxlR family transcriptional regulator compare
BWI76_RS11300 -2.5 -0.9 cupin compare
BWI76_RS27915 -2.5 -1.9 YceK/YidQ family lipoprotein compare
BWI76_RS21370 -2.4 -0.9 ATP-dependent RNA helicase SrmB compare
BWI76_RS22090 -2.4 -1.8 transcriptional regulator compare
BWI76_RS05120 -2.4 -5.5 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS08215 -2.4 -3.5 glucosamine-6-phosphate deaminase compare
BWI76_RS00240 -2.4 -1.2 FMN-binding protein MioC compare
BWI76_RS24605 -2.3 -5.0 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS25920 -2.3 -1.4 peptidylprolyl isomerase compare
BWI76_RS14390 -2.3 -1.2 hypothetical protein compare
BWI76_RS09615 -2.3 -2.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
BWI76_RS01630 -2.3 -1.0 16S ribosomal RNA compare
BWI76_RS19685 -2.2 -3.1 lysine transporter compare
BWI76_RS20490 -2.2 -2.5 hypothetical protein compare
BWI76_RS15975 -2.2 -0.8 hypothetical protein compare
BWI76_RS23920 -2.2 -1.8 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS16955 -2.0 -0.9 hypothetical protein compare
BWI76_RS09190 -2.0 -1.4 hypothetical protein compare
BWI76_RS02530 -2.0 -1.2 tRNA dimethylallyltransferase compare
BWI76_RS19460 -2.0 -2.1 lipoprotein compare
BWI76_RS25000 -2.0 -1.1 malonate decarboxylase acyl carrier protein compare
BWI76_RS19840 -2.0 -0.5 hypothetical protein compare
BWI76_RS17975 -2.0 -3.8 tail-specific protease compare
BWI76_RS01870 -2.0 -3.2 diacylglycerol kinase compare
BWI76_RS09970 -1.9 -0.9 porin OmpA compare
BWI76_RS19730 -1.9 -3.5 1-phosphofructokinase compare
BWI76_RS09755 -1.9 -3.0 phosphoserine transaminase compare
BWI76_RS24885 -1.9 -0.8 PTS galactitol transporter subunit IIB compare
BWI76_RS15845 -1.9 -0.9 hypothetical protein compare
BWI76_RS24595 -1.9 -2.1 dihydroxyacetone kinase subunit DhaK compare
BWI76_RS17770 -1.8 -1.5 isomerase/hydrolase compare
BWI76_RS00180 -1.8 -0.7 F0F1 ATP synthase subunit epsilon compare
BWI76_RS25280 -1.8 -0.9 RNase adaptor protein RapZ compare
BWI76_RS20440 -1.8 -2.8 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS04645 -1.8 -2.9 3-dehydroquinase compare
BWI76_RS20720 -1.8 -1.4 hypothetical protein compare
BWI76_RS06520 -1.8 -2.5 trigger factor compare
BWI76_RS23365 -1.8 -3.5 LysR family transcriptional regulator compare
BWI76_RS21075 -1.8 -1.0 membrane protein compare
BWI76_RS21565 -1.7 -0.7 outer membrane protein assembly factor BamE compare
BWI76_RS26095 -1.7 -0.6 shikimate kinase compare
BWI76_RS08605 -1.6 -1.5 phosphoglyceromutase compare
BWI76_RS12215 -1.6 -3.3 HNH endonuclease compare
BWI76_RS01190 -1.6 -1.3 iron donor protein CyaY compare
BWI76_RS23580 -1.6 -1.6 hypothetical protein compare
BWI76_RS05810 -1.6 -1.0 hypothetical protein compare
BWI76_RS16425 -1.6 -2.5 hypothetical protein compare
BWI76_RS11900 -1.6 -0.8 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
BWI76_RS02735 -1.6 -2.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS16965 -1.6 -1.6 murein lipoprotein compare
BWI76_RS22975 -1.6 -2.2 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA compare
BWI76_RS15110 -1.6 -3.9 putative excinuclease ABC subunit A compare
BWI76_RS26890 -1.6 -1.2 hypothetical protein compare
BWI76_RS15015 -1.5 -0.9 DUF2132 domain-containing protein compare
BWI76_RS23360 -1.5 -1.3 diaminopimelate decarboxylase compare
BWI76_RS05835 -1.5 -1.1 gamma-glutamyl-phosphate reductase compare
BWI76_RS07725 -1.5 -0.9 iron-enterobactin transporter permease compare
BWI76_RS09640 -1.5 -1.8 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS09825 -1.5 -3.9 envelope biogenesis factor ElyC compare
BWI76_RS27760 -1.5 -2.3 lactam utilization protein LamB compare
BWI76_RS21450 -1.5 -1.3 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS24765 -1.5 -1.4 membrane protein compare
BWI76_RS16485 -1.5 -0.7 ribonuclease T compare
BWI76_RS26665 -1.5 -1.8 DNA-binding response regulator compare
BWI76_RS18815 -1.5 -1.2 nitrogenase molybdenum-iron protein alpha chain compare
BWI76_RS12460 -1.5 -1.5 envelope stress response membrane protein PspC compare
BWI76_RS20730 -1.4 -1.2 hypothetical protein compare
BWI76_RS12200 -1.4 -2.7 hypothetical protein compare
BWI76_RS12150 -1.4 -2.4 DNA damage-inducible protein I compare
BWI76_RS17720 -1.4 -0.3 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS25065 -1.4 -2.5 polyribonucleotide nucleotidyltransferase compare
BWI76_RS26730 -1.4 -3.3 inner membrane protein YhjD compare
BWI76_RS05450 -1.4 -0.5 ribonuclease HI compare
BWI76_RS21310 -1.4 -0.9 DNA repair protein RecO compare
BWI76_RS25870 -1.4 -1.0 elongation factor Tu compare
BWI76_RS24275 -1.4 -2.1 biopolymer transport protein ExbD compare
BWI76_RS08040 -1.4 -1.4 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
BWI76_RS20640 -1.4 -2.7 cysteine synthase A compare
BWI76_RS17980 -1.4 -2.3 RNA chaperone ProQ compare
BWI76_RS27440 -1.4 -1.3 DNA helicase RecG compare
BWI76_RS27165 -1.4 -3.4 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS26570 -1.4 -0.9 anion permease compare
BWI76_RS21505 -1.4 -1.0 hypothetical protein compare
BWI76_RS10930 -1.4 -5.0 glucan biosynthesis protein G compare
BWI76_RS01170 -1.4 -2.2 uroporphyrinogen-III C-methyltransferase compare
BWI76_RS14300 -1.4 -1.4 hypothetical protein compare
BWI76_RS00875 -1.4 -3.2 DNA-binding transcriptional regulator FabR compare
BWI76_RS11000 -1.4 -2.8 glutaredoxin 2 compare
BWI76_RS01800 -1.3 -1.8 glucose-6-phosphate isomerase compare
BWI76_RS09195 -1.3 -0.8 N-acetyltransferase compare
BWI76_RS26175 -1.3 -2.8 DeoR/GlpR family transcriptional regulator compare
BWI76_RS00755 -1.3 -2.9 ATP-dependent protease subunit HslV compare
BWI76_RS20170 -1.3 -3.2 NADH-quinone oxidoreductase subunit F compare
BWI76_RS12400 -1.3 -3.8 TetR family transcriptional regulator compare
BWI76_RS19705 -1.3 -2.9 kinase compare
BWI76_RS19010 -1.3 -2.0 polysaccharide pyruvyl transferase yvff compare
BWI76_RS21535 -1.3 -3.3 inner membrane protein YpjD compare
BWI76_RS19035 -1.3 -4.9 dTDP-rhamnosyl transferase compare
BWI76_RS13595 -1.3 -2.6 transcriptional regulator compare
BWI76_RS27755 -1.3 -5.6 molecular chaperone TorD compare
BWI76_RS04160 -1.3 -1.8 phosphoserine phosphatase compare
BWI76_RS22805 -1.3 -4.2 GTP diphosphokinase compare
BWI76_RS12270 -1.2 -2.1 hypothetical protein compare
BWI76_RS15660 -1.2 -1.3 hypothetical protein compare
BWI76_RS06405 -1.2 -1.4 2-dehydropantoate 2-reductase compare
BWI76_RS00400 -1.2 -0.5 glutamine synthetase compare
BWI76_RS06290 -1.2 -1.2 ACP phosphodiesterase compare
BWI76_RS26775 -1.2 -3.4 endo-1,4-D-glucanase compare
BWI76_RS04100 -1.2 -1.6 peptide chain release factor 3 compare
BWI76_RS24740 -1.2 -1.8 GntR family transcriptional regulator compare
BWI76_RS26390 -1.2 -4.4 cell division protein FtsX compare
BWI76_RS05350 -1.2 -4.9 Rcs stress response system protein RcsF compare
BWI76_RS18950 -1.2 -2.6 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS21235 -1.2 -0.6 hypothetical protein compare
BWI76_RS14320 -1.2 -1.2 hypothetical protein compare
BWI76_RS15360 -1.2 -1.4 hypothetical protein compare
BWI76_RS04305 -1.2 -0.7 molecular chaperone DnaJ compare
BWI76_RS13785 -1.2 -1.1 ABC transporter permease compare
BWI76_RS10625 -1.2 -4.4 hypothetical protein compare
BWI76_RS17525 -1.2 -1.1 XshC-Cox1-family protein compare
BWI76_RS18410 -1.2 -2.0 drug/metabolite exporter YedA compare
BWI76_RS19910 -1.1 -5.6 phosphotransferase RcsD compare
BWI76_RS11155 -1.1 -1.5 penicillin-binding protein activator LpoB compare
BWI76_RS26670 -1.1 -2.9 two-component sensor histidine kinase compare
BWI76_RS22765 -1.1 -3.8 sulfite reductase subunit alpha compare
BWI76_RS01200 -1.1 -0.6 diaminopimelate epimerase compare
BWI76_RS12240 -1.1 -4.3 terminase small subunit compare
BWI76_RS00120 -1.1 -3.1 glucosamine-6-phosphate deaminase compare
BWI76_RS20145 -1.1 -0.9 NADH-quinone oxidoreductase subunit K compare
BWI76_RS12205 -1.1 -2.5 hypothetical protein compare
BWI76_RS10465 -1.1 -1.9 hypothetical protein compare
BWI76_RS10580 -1.1 -1.8 amino acid ABC transporter permease compare
BWI76_RS15365 -1.1 -1.6 hypothetical protein compare
BWI76_RS20280 -1.1 -1.8 phosphodiesterase compare
BWI76_RS14770 -1.1 -0.7 PTS IIA 2 domain protein compare
BWI76_RS15530 -1.1 -1.9 hypothetical protein compare
BWI76_RS12265 -1.1 -2.3 hypothetical protein compare
BWI76_RS01115 -1.1 -1.0 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS11895 -1.1 -1.3 AraC family transcriptional regulator compare
BWI76_RS19330 -1.1 -0.5 HAD family hydrolase compare
BWI76_RS06780 -1.1 -3.8 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS12260 -1.1 -3.0 hypothetical protein compare
BWI76_RS04270 -1.1 -2.7 transaldolase compare
BWI76_RS02545 -1.1 -2.2 protease modulator HflK compare
BWI76_RS19920 -1.1 -3.7 hybrid sensor histidine kinase/response regulator compare
BWI76_RS27865 -1.1 -2.4 hypothetical protein compare
BWI76_RS21660 -1.1 -0.9 antirestriction protein compare
BWI76_RS02855 -1.1 -2.0 cytochrome B562 compare
BWI76_RS15950 -1.1 -0.8 dethiobiotin synthase compare
BWI76_RS24100 -1.1 -1.4 YggS family pyridoxal phosphate enzyme compare
BWI76_RS24850 -1.1 -3.2 DeoR family transcriptional regulator compare
BWI76_RS25285 -1.1 -0.6 HPr family phosphocarrier protein compare
BWI76_RS01795 -1.1 -1.6 hypothetical protein compare
BWI76_RS12275 -1.0 -2.3 hypothetical protein compare
BWI76_RS03920 -1.0 -1.8 N-acetyltransferase compare
BWI76_RS12340 -1.0 -2.0 molecular chaperone Tir compare
BWI76_RS05180 -1.0 -3.7 serine endoprotease DegQ compare
BWI76_RS06295 -1.0 -2.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
BWI76_RS12245 -1.0 -4.7 hypothetical protein compare
BWI76_RS00600 -1.0 -1.8 LacI family transcriptional regulator compare
BWI76_RS13130 -1.0 -1.5 phenylacetic acid degradation protein PaaD compare
BWI76_RS02780 -1.0 -5.7 translocation and assembly module TamB compare
BWI76_RS24120 -1.0 -2.7 YggW family oxidoreductase compare
BWI76_RS01540 -1.0 -1.6 thiamine biosynthesis protein ThiS compare
BWI76_RS25600 -1.0 -0.5 tRNA-Thr compare
BWI76_RS07640 -1.0 -1.2 short chain dehydrogenase compare
BWI76_RS08275 -1.0 -1.1 LexA regulated protein compare
BWI76_RS23520 -1.0 -0.9 hypothetical protein compare
BWI76_RS12695 -1.0 -2.1 zinc transporter ZntB compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in mixed community experiments

For mixed community Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL across organisms