Experiment set14IT066 for Klebsiella michiganensis M5al

Compare to:

LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS01330 +2.0 4.6 twin-arginine translocase subunit TatC compare
BWI76_RS23895 +2.0 2.1 Xaa-Pro aminopeptidase compare
BWI76_RS02180 +1.7 3.0 hypothetical protein compare
BWI76_RS01325 +1.7 3.4 twin-arginine translocase subunit TatB compare
BWI76_RS20900 +1.7 1.9 outer membrane protein assembly factor BamC compare
BWI76_RS14670 +1.6 3.0 hypothetical protein compare
BWI76_RS14775 +1.5 3.2 creatinine amidohydrolase compare
BWI76_RS21675 +1.5 1.2 hypothetical protein compare
BWI76_RS14075 +1.3 1.3 TetR family transcriptional regulator compare
BWI76_RS06800 +1.3 2.8 DUF2496 domain-containing protein compare
BWI76_RS16345 +1.3 5.2 nucleoid-associated protein compare
BWI76_RS20785 +1.2 1.7 ethanolamine utilization protein EutJ compare
BWI76_RS12185 +1.2 1.4 hypothetical protein compare
BWI76_RS11790 +1.2 3.1 acyl-CoA thioesterase compare
BWI76_RS10755 +1.2 2.0 pyrimidine utilization flavin reductase protein F compare
BWI76_RS15260 +1.2 1.5 hypothetical protein compare
BWI76_RS15975 +1.2 1.0 hypothetical protein compare
BWI76_RS04970 +1.2 2.6 ABC transporter permease compare
BWI76_RS12420 +1.1 1.3 peptide ABC transporter substrate-binding protein SapA compare
BWI76_RS21325 +1.1 2.4 hypothetical protein compare
BWI76_RS21275 +1.1 4.2 lytic transglycosylase F compare
BWI76_RS07725 +1.1 1.3 iron-enterobactin transporter permease compare
BWI76_RS23245 +1.0 1.7 hypothetical protein compare
BWI76_RS03045 +1.0 1.8 hypothetical protein compare
BWI76_RS20050 +1.0 2.0 hypothetical protein compare
BWI76_RS13095 +1.0 2.0 phenylacetate-CoA oxygenase subunit PaaB compare
BWI76_RS05465 +1.0 1.3 amidohydrolase compare
BWI76_RS03105 +1.0 1.1 myo-inosose-2 dehydratase compare
BWI76_RS01545 +1.0 3.3 thiamine biosynthesis protein ThiS compare
BWI76_RS12070 +1.0 1.0 hypothetical protein compare
BWI76_RS16195 +1.0 2.0 hypothetical protein compare
BWI76_RS08330 +1.0 1.3 hypothetical protein compare
BWI76_RS16000 +0.9 1.6 multidrug transporter subunit MdtI compare
BWI76_RS27940 +0.9 1.6 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
BWI76_RS15435 +0.9 1.1 hypothetical protein compare
BWI76_RS13090 +0.9 2.6 phenylacetate-CoA oxygenase subunit PaaA compare
BWI76_RS06490 +0.9 3.2 cytochrome ubiquinol oxidase subunit I compare
BWI76_RS11780 +0.9 2.0 2-deoxyglucose-6-phosphatase compare
BWI76_RS24070 +0.9 1.6 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
BWI76_RS10435 +0.9 1.7 suppressor for copper-sensitivity C compare
BWI76_RS00480 +0.9 1.7 hypothetical protein compare
BWI76_RS06735 +0.9 1.9 50S ribosomal protein L31 compare
BWI76_RS14540 +0.9 2.3 yersiniabactin biosynthetic protein YbtU compare
BWI76_RS00755 +0.9 1.2 ATP-dependent protease subunit HslV compare
BWI76_RS19480 +0.9 2.2 transcriptional regulator compare
BWI76_RS15940 +0.9 1.6 DMSO reductase maturation protein DsmD compare
BWI76_RS25505 +0.9 3.7 RNase E specificity factor CsrD compare
BWI76_RS00965 +0.9 0.7 acetolactate synthase 2 small subunit compare
BWI76_RS08515 +0.9 1.8 acyl-CoA thioesterase YbgC compare
BWI76_RS07780 +0.9 1.1 hypothetical protein compare
BWI76_RS08655 +0.9 2.7 molybdenum ABC transporter ATP-binding protein compare
BWI76_RS25375 +0.9 1.9 hypothetical protein compare
BWI76_RS07475 +0.9 1.5 DNA-binding transcriptional regulator RamA compare
BWI76_RS15800 +0.8 1.8 transcriptional regulator compare
BWI76_RS04805 +0.8 2.9 8-oxo-dGTP diphosphatase compare
BWI76_RS08835 +0.8 2.9 molybdopterin guanine dinucleotide biosynthesis protein MoaE compare
BWI76_RS16675 +0.8 1.3 ABC transporter compare
BWI76_RS17765 +0.8 1.7 hypothetical protein compare
BWI76_RS09565 +0.8 4.6 hybrid-cluster NAD(P)-dependent oxidoreductase compare
BWI76_RS19310 +0.8 2.4 ABC transporter permease compare
BWI76_RS25230 +0.8 1.9 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS08585 +0.8 3.5 nicotinamide riboside transporter PnuC compare
BWI76_RS19860 +0.8 1.4 hypothetical protein compare
BWI76_RS23860 +0.8 1.8 protein disulfide oxidoreductase compare
BWI76_RS15165 +0.8 2.7 MBL fold metallo-hydrolase compare
BWI76_RS13320 +0.8 2.1 putative LpxA-like enzyme compare
BWI76_RS08765 +0.8 1.4 8-amino-7-oxononanoate synthase compare
BWI76_RS13215 +0.8 1.3 type I glyceraldehyde-3-phosphate dehydrogenase compare
BWI76_RS17200 +0.8 1.9 hypothetical protein compare
BWI76_RS15255 +0.8 2.9 hypothetical protein compare
BWI76_RS23055 +0.8 3.1 cobalamin biosynthesis protein CbiG compare
BWI76_RS16335 +0.8 1.2 division septum protein Blr compare
BWI76_RS15270 +0.8 3.0 phenazine biosynthesis protein PhzF family compare
BWI76_RS24180 +0.8 1.5 hypothetical protein compare
BWI76_RS18080 +0.8 2.6 protein YebE compare
BWI76_RS12480 +0.8 2.7 TIGR01620 family protein compare
BWI76_RS14805 +0.8 1.5 hypothetical protein compare
BWI76_RS08615 +0.8 5.8 galactokinase compare
BWI76_RS15075 +0.8 3.9 non-ribosomal peptide synthase compare
BWI76_RS23250 +0.8 1.1 hypothetical protein compare
BWI76_RS17945 +0.8 1.1 hypothetical protein compare
BWI76_RS16220 +0.7 1.2 hypothetical protein compare
BWI76_RS25225 +0.7 1.7 ABC transporter permease compare
BWI76_RS23255 +0.7 2.3 prepilin-type cleavage/methylation domain-containing protein compare
BWI76_RS16915 +0.7 2.6 alpha/beta hydrolase fold protein compare
BWI76_RS05645 +0.7 3.0 fructuronate reductase compare
BWI76_RS18360 +0.7 1.6 aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein compare
BWI76_RS00475 +0.7 2.9 sulfurtransferase FdhD compare
BWI76_RS23300 +0.7 2.5 YgdI/YgdR family lipoprotein compare
BWI76_RS01895 +0.7 3.2 cupin compare
BWI76_RS17100 +0.7 1.4 glutathione peroxidase compare
BWI76_RS10680 +0.7 2.3 tartrate dehydrogenase compare
BWI76_RS20795 +0.7 1.0 ethanolamine catabolic microcompartment shell protein EutN compare
BWI76_RS12825 +0.7 1.7 hypothetical protein compare
BWI76_RS16760 +0.7 2.6 lipase compare
BWI76_RS10945 +0.7 2.0 SecY/SecA suppressor protein compare
BWI76_RS11810 +0.7 1.0 outer membrane protein OmpW compare
BWI76_RS00100 +0.7 2.3 hypothetical protein compare
BWI76_RS23710 +0.7 2.2 3-keto-2-deoxy-D-ribonyl-CoA thiolase (from data) compare
BWI76_RS12600 +0.7 2.8 MFS transporter compare
BWI76_RS20945 +0.7 2.2 uracil phosphoribosyltransferase compare
BWI76_RS12875 +0.7 2.2 bifunctional deaminase-reductase compare
BWI76_RS17830 +0.7 2.1 ABC transporter ATP-binding protein compare
BWI76_RS12150 +0.7 2.5 DNA damage-inducible protein I compare
BWI76_RS23050 +0.7 1.9 cobalt-precorrin-3B C(17)-methyltransferase compare
BWI76_RS11680 +0.7 2.1 succinylglutamate-semialdehyde dehydrogenase compare
BWI76_RS00825 +0.7 3.5 AraC family transcriptional regulator compare
BWI76_RS03040 +0.7 1.6 leucyl aminopeptidase compare
BWI76_RS09440 +0.7 1.0 hypothetical protein compare
BWI76_RS11815 +0.7 0.8 hypothetical protein compare
BWI76_RS04985 +0.7 2.4 aspartate 1-decarboxylase compare
BWI76_RS10725 +0.7 2.1 hypothetical protein compare
BWI76_RS16135 +0.7 2.5 acetyl-CoA acetyltransferase compare
BWI76_RS14925 +0.7 1.6 ABC transporter substrate-binding protein compare
BWI76_RS12855 +0.7 1.2 enamine deaminase RidA compare
BWI76_RS00340 +0.7 3.0 stress response kinase A compare
BWI76_RS20325 +0.7 2.4 histidine/lysine/arginine/ornithine ABC transporter permease HisM compare
BWI76_RS01935 +0.7 1.3 thiamin phosphate synthase compare
BWI76_RS20925 +0.7 2.0 peptidase M48 compare
BWI76_RS22300 +0.7 1.5 hydrogenase 3 maturation endopeptidase HyCI compare
BWI76_RS14350 +0.7 2.7 hypothetical protein compare
BWI76_RS23460 +0.6 2.1 hypothetical protein compare
BWI76_RS18165 +0.6 0.7 NUDIX pyrophosphatase compare
BWI76_RS22450 +0.6 1.4 selenoprotein W-related protein compare
BWI76_RS09865 +0.6 2.6 MBL fold hydrolase compare
BWI76_RS02225 +0.6 2.4 phosphonate C-P lyase system protein PhnG compare
BWI76_RS12375 +0.6 2.4 DNA-invertase hin compare
BWI76_RS00400 +0.6 0.5 glutamine synthetase compare
BWI76_RS16925 +0.6 2.3 3-(3-hydroxyphenyl)propionate hydroxylase compare
BWI76_RS02695 +0.6 2.2 peptidyl-prolyl cis-trans isomerase compare
BWI76_RS20970 +0.6 1.1 phosphoribosylglycinamide formyltransferase compare
BWI76_RS12665 +0.6 1.5 hypothetical protein compare
BWI76_RS06435 +0.6 2.7 MFS transporter compare
BWI76_RS25115 +0.6 2.6 argininosuccinate synthase compare
BWI76_RS18230 +0.6 1.1 trehalose-6-phosphate synthase compare
BWI76_RS01835 +0.6 2.0 chemotaxis protein CheW compare
BWI76_RS16495 +0.6 1.0 endopeptidase compare
BWI76_RS25705 +0.6 1.6 hypothetical protein compare
BWI76_RS20225 +0.6 1.7 hypothetical protein compare
BWI76_RS12790 +0.6 0.6 lactate dehydrogenase compare
BWI76_RS15035 +0.6 1.3 metal ABC transporter permease compare
BWI76_RS20220 +0.6 2.5 sugar phosphatase compare
BWI76_RS26285 +0.6 2.4 glycerophosphodiester phosphodiesterase compare
BWI76_RS24255 +0.6 3.5 thiol:disulfide oxidoreductase compare
BWI76_RS14930 +0.6 1.2 hypothetical protein compare
BWI76_RS26660 +0.6 1.4 transcription elongation factor GreB compare
BWI76_RS04155 +0.6 2.3 membrane protein compare
BWI76_RS11240 +0.6 2.5 spermidine/putrescine ABC transporter substrate-binding protein PotD compare
BWI76_RS15985 +0.6 1.2 LysR family transcriptional regulator compare
BWI76_RS00025 +0.6 0.7 hypothetical protein compare
BWI76_RS06225 +0.6 2.8 exonuclease sbcCD subunit D compare
BWI76_RS05415 +0.6 2.2 LysR family transcriptional regulator compare
BWI76_RS06250 +0.6 1.8 alpha-glycosidase compare
BWI76_RS12975 +0.6 1.4 type I glyceraldehyde-3-phosphate dehydrogenase compare
BWI76_RS24955 +0.6 0.8 hypothetical protein compare
BWI76_RS10550 +0.6 3.5 AtzE family amidohydrolase compare
BWI76_RS08280 +0.6 1.0 acyl-CoA esterase compare
BWI76_RS16350 +0.6 1.7 membrane protein compare
BWI76_RS14045 +0.6 2.2 oxidoreductase compare
BWI76_RS13135 +0.6 1.3 3-oxoadipyl-CoA thiolase compare
BWI76_RS01240 +0.6 3.1 phospholipase A compare
BWI76_RS01775 +0.6 0.9 hypothetical protein compare
BWI76_RS18115 +0.6 3.5 pyruvate kinase compare
BWI76_RS20560 +0.6 1.1 hypothetical protein compare
BWI76_RS24240 +0.6 1.6 hypothetical protein compare
BWI76_RS19085 +0.6 4.6 protein-tyrosine-phosphatase compare
BWI76_RS25165 +0.6 2.4 serine-type D-Ala-D-Ala carboxypeptidase compare
BWI76_RS09135 +0.6 1.6 oxidoreductase compare
BWI76_RS11900 +0.6 0.5 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
BWI76_RS00750 +0.6 1.9 ATP-dependent protease ATP-binding subunit HslU compare
BWI76_RS18300 +0.6 1.9 hypothetical protein compare
BWI76_RS14225 +0.6 1.6 anti-ECF sigma factor ChrR compare
BWI76_RS13625 +0.6 1.5 hypothetical protein compare
BWI76_RS09085 +0.6 3.2 molybdopterin molybdenumtransferase MoeA compare
BWI76_RS24515 +0.6 2.1 urease accessory protein UreE compare
BWI76_RS19495 +0.6 0.6 ABC transporter, quaternary amine uptake transporter (QAT) family, ATP-binding protein compare
BWI76_RS25160 +0.6 1.5 transcription elongation factor GreA compare
BWI76_RS16970 +0.6 4.0 murein L,D-transpeptidase compare
BWI76_RS21185 +0.6 1.9 hypothetical protein compare
BWI76_RS04465 +0.6 1.8 carbamoyl-phosphate synthase small subunit compare
BWI76_RS06485 +0.6 0.8 cytochrome o ubiquinol oxidase subunit III compare
BWI76_RS15315 +0.6 1.3 DNA-binding protein compare
BWI76_RS00290 +0.6 2.8 Ribokinase (EC 2.7.1.15) (from data) compare
BWI76_RS15090 +0.6 2.1 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase compare
BWI76_RS00335 +0.6 1.5 hypothetical protein compare
BWI76_RS24330 +0.6 1.9 TIGR00156 family protein compare
BWI76_RS16460 +0.6 2.2 oxidoreductase compare
BWI76_RS14435 +0.6 0.8 glutamine ABC transporter ATP-binding protein compare
BWI76_RS18225 +0.5 1.9 universal stress protein C compare
BWI76_RS26480 +0.5 3.5 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
BWI76_RS08260 +0.5 1.2 LysR family transcriptional regulator compare
BWI76_RS20750 +0.5 0.4 carboxysome structural protein EutK compare
BWI76_RS23915 +0.5 0.5 5-formyltetrahydrofolate cyclo-ligase compare
BWI76_RS06060 +0.5 1.9 DNA-binding response regulator compare
BWI76_RS03310 +0.5 1.6 AraC family transcriptional regulator compare
BWI76_RS06070 +0.5 1.9 taurine transporter ATP-binding subunit compare
BWI76_RS06505 +0.5 1.9 hypothetical protein compare
BWI76_RS15980 +0.5 1.2 lysine transporter LysE compare
BWI76_RS12545 +0.5 1.0 hypothetical protein compare
BWI76_RS15295 +0.5 2.6 MDR efflux pump AcrAB transcriptional activator MarA compare


Specific Phenotypes

For 1 genes in this experiment

For mixed community Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL in Klebsiella michiganensis M5al

For mixed community Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL across organisms