Experiment set14IT065 for Klebsiella michiganensis M5al

Compare to:

LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL

200 most important genes:

  gene name fitness t score description  
BWI76_RS26460 -4.7 -3.2 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS27915 -4.7 -2.4 YceK/YidQ family lipoprotein compare
BWI76_RS26455 -4.7 -2.0 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS26440 -4.5 -1.4 hypothetical protein compare
BWI76_RS23265 -4.2 -1.8 hypothetical protein compare
BWI76_RS09335 -4.1 -1.3 baseplate assembly protein W compare
BWI76_RS08520 -4.1 -2.1 colicin transporter TolQ compare
BWI76_RS04160 -3.8 -2.6 phosphoserine phosphatase compare
BWI76_RS15350 -3.7 -1.1 hypothetical protein compare
BWI76_RS05015 -3.7 -2.2 transcriptional regulator compare
BWI76_RS21070 -3.7 -1.9 outer membrane protein assembly factor BamB compare
BWI76_RS12090 -3.6 -2.6 HNH endonuclease compare
BWI76_RS25870 -3.6 -1.5 elongation factor Tu compare
BWI76_RS12070 -3.6 -1.1 hypothetical protein compare
BWI76_RS21235 -3.5 -1.1 hypothetical protein compare
BWI76_RS08530 -3.4 -1.5 protein TolA compare
BWI76_RS05260 -3.3 -1.4 chaperone compare
BWI76_RS08405 -3.3 -3.0 succinate dehydrogenase flavoprotein subunit compare
BWI76_RS20360 -3.3 -1.0 cell division protein DedD compare
BWI76_RS10745 -3.1 -0.9 hypothetical protein compare
BWI76_RS27425 -3.1 -1.6 DNA-directed RNA polymerase subunit omega compare
BWI76_RS21075 -3.1 -1.5 membrane protein compare
BWI76_RS07465 -3.0 -1.2 TetR family transcriptional regulator compare
BWI76_RS20750 -2.9 -0.8 carboxysome structural protein EutK compare
BWI76_RS01190 -2.7 -1.5 iron donor protein CyaY compare
BWI76_RS08210 -2.7 -1.1 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS21350 -2.7 -2.1 anti-RNA polymerase sigma factor SigE compare
BWI76_RS20785 -2.6 -1.4 ethanolamine utilization protein EutJ compare
BWI76_RS19495 -2.6 -1.1 ABC transporter, quaternary amine uptake transporter (QAT) family, ATP-binding protein compare
BWI76_RS24740 -2.6 -3.2 GntR family transcriptional regulator compare
BWI76_RS04525 -2.6 -1.8 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS07730 -2.6 -0.8 iron-enterobactin transporter membrane protein compare
BWI76_RS01800 -2.6 -2.5 glucose-6-phosphate isomerase compare
BWI76_RS09760 -2.6 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS23365 -2.6 -4.8 LysR family transcriptional regulator compare
BWI76_RS15825 -2.5 -1.0 hypothetical protein compare
BWI76_RS24580 -2.5 -2.4 PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR compare
BWI76_RS09645 -2.5 -0.7 thioredoxin-disulfide reductase compare
BWI76_RS14170 -2.5 -3.1 hypothetical protein compare
BWI76_RS21370 -2.4 -1.0 ATP-dependent RNA helicase SrmB compare
BWI76_RS20490 -2.3 -2.2 hypothetical protein compare
BWI76_RS16965 -2.3 -2.5 murein lipoprotein compare
BWI76_RS08525 -2.2 -1.9 colicin transporter compare
BWI76_RS11250 -2.2 -1.4 spermidine/putrescine ABC transporter permease PotB compare
BWI76_RS19010 -2.2 -2.5 polysaccharide pyruvyl transferase yvff compare
BWI76_RS02815 -2.2 -1.8 fructose-bisphosphatase class I compare
BWI76_RS05810 -2.2 -1.3 hypothetical protein compare
BWI76_RS09970 -2.2 -0.8 porin OmpA compare
BWI76_RS13820 -2.2 -1.4 hypothetical protein compare
BWI76_RS02530 -2.1 -1.4 tRNA dimethylallyltransferase compare
BWI76_RS06535 -2.1 -2.7 endopeptidase La compare
BWI76_RS19685 -2.0 -4.0 lysine transporter compare
BWI76_RS16425 -2.0 -3.1 hypothetical protein compare
BWI76_RS17980 -2.0 -3.6 RNA chaperone ProQ compare
BWI76_RS23885 -2.0 -0.8 2-octaprenylphenol hydroxylase compare
BWI76_RS00240 -2.0 -1.4 FMN-binding protein MioC compare
BWI76_RS15845 -2.0 -1.0 hypothetical protein compare
BWI76_RS19840 -2.0 -0.6 hypothetical protein compare
BWI76_RS00180 -1.9 -0.8 F0F1 ATP synthase subunit epsilon compare
BWI76_RS01090 -1.9 -4.0 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS01095 -1.9 -1.3 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS18780 -1.9 -2.1 D-alanyl-D-alanine carboxypeptidase compare
BWI76_RS13445 -1.9 -1.1 alpha/beta hydrolase compare
BWI76_RS24605 -1.9 -4.6 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS05840 -1.9 -3.2 glutamate 5-kinase compare
BWI76_RS01170 -1.9 -3.0 uroporphyrinogen-III C-methyltransferase compare
BWI76_RS09730 -1.9 -0.7 pyruvate formate lyase 1-activating protein compare
BWI76_RS09190 -1.9 -1.2 hypothetical protein compare
BWI76_RS25920 -1.8 -1.2 peptidylprolyl isomerase compare
BWI76_RS21450 -1.8 -2.0 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS22690 -1.8 -2.4 adenylyl-sulfate kinase compare
BWI76_RS01080 -1.8 -4.9 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS22420 -1.8 -1.7 LacI family transcriptional regulator compare
BWI76_RS26095 -1.7 -0.7 shikimate kinase compare
BWI76_RS20280 -1.7 -4.6 phosphodiesterase compare
BWI76_RS00875 -1.7 -3.2 DNA-binding transcriptional regulator FabR compare
BWI76_RS24900 -1.7 -1.0 DeoR family transcriptional regulator compare
BWI76_RS25425 -1.7 -0.9 arginine repressor compare
BWI76_RS13775 -1.6 -1.9 putative FMN-dependent luciferase-like monooxygenase compare
BWI76_RS04100 -1.6 -2.4 peptide chain release factor 3 compare
BWI76_RS06520 -1.6 -3.7 trigger factor compare
BWI76_RS12495 -1.6 -0.9 2-Cys peroxiredoxin compare
BWI76_RS08430 -1.6 -4.2 succinate--CoA ligase subunit alpha compare
BWI76_RS09305 -1.6 -2.6 hypothetical protein compare
BWI76_RS23495 -1.6 -4.7 hypothetical protein compare
BWI76_RS17300 -1.6 -0.8 tRNA-Tyr compare
BWI76_RS14320 -1.5 -1.3 hypothetical protein compare
BWI76_RS20640 -1.5 -3.6 cysteine synthase A compare
BWI76_RS19730 -1.5 -3.4 1-phosphofructokinase compare
BWI76_RS00940 -1.5 -4.4 transcriptional regulator HdfR compare
BWI76_RS06680 -1.5 -1.0 hypothetical protein compare
BWI76_RS01220 -1.5 -4.1 DNA-dependent helicase II compare
BWI76_RS12040 -1.5 -1.2 hypothetical protein compare
BWI76_RS08385 -1.5 -1.9 citrate (Si)-synthase compare
BWI76_RS22020 -1.5 -3.6 L-alanine exporter AlaE compare
BWI76_RS11155 -1.5 -2.0 penicillin-binding protein activator LpoB compare
BWI76_RS00715 -1.5 -1.0 two-component sensor histidine kinase compare
BWI76_RS05450 -1.5 -0.6 ribonuclease HI compare
BWI76_RS16555 -1.4 -2.9 hypothetical protein compare
BWI76_RS21345 -1.4 -1.9 sigma-E factor regulatory protein RseB compare
BWI76_RS12870 -1.4 -1.4 putative phytanoyl-CoA dioxygenase compare
BWI76_RS02050 -1.4 -1.7 CidA/LrgA family protein compare
BWI76_RS07185 -1.4 -0.9 hypothetical protein compare
BWI76_RS17860 -1.4 -1.4 YoaH family protein compare
BWI76_RS09145 -1.4 -1.9 serine-type D-Ala-D-Ala carboxypeptidase compare
BWI76_RS01125 -1.4 -3.4 4-alpha-L-fucosyltransferase compare
BWI76_RS12745 -1.4 -2.4 putative prophage membrane protein compare
BWI76_RS08040 -1.4 -1.5 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
BWI76_RS01185 -1.4 -0.9 adenylate cyclase compare
BWI76_RS10935 -1.4 -2.6 glucan biosynthesis glucosyltransferase H compare
BWI76_RS10910 -1.3 -1.4 hypothetical protein compare
BWI76_RS13250 -1.3 -1.1 cytochrome b561 compare
BWI76_RS22760 -1.3 -3.9 sulfite reductase subunit beta compare
BWI76_RS19905 -1.3 -2.2 OmpK36 porin compare
BWI76_RS14305 -1.3 -2.6 metallophosphoesterase compare
BWI76_RS01110 -1.3 -2.0 TDP-fucosamine acetyltransferase compare
BWI76_RS20190 -1.3 -2.3 NADH-quinone oxidoreductase subunit A compare
BWI76_RS16515 -1.3 -1.6 LysR family transcriptional regulator compare
BWI76_RS12335 -1.3 -3.4 hypothetical protein compare
BWI76_RS03225 -1.3 -4.8 transcriptional regulator compare
BWI76_RS15115 -1.3 -0.9 MFS transporter compare
BWI76_RS15110 -1.3 -2.8 putative excinuclease ABC subunit A compare
BWI76_RS15860 -1.3 -3.6 adenine-specific DNA methyltransferase compare
BWI76_RS23360 -1.3 -0.9 diaminopimelate decarboxylase compare
BWI76_RS07785 -1.3 -1.3 transcriptional regulator compare
BWI76_RS09640 -1.3 -1.6 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS23920 -1.3 -1.8 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS08360 -1.3 -2.6 LamB/YcsF family protein compare
BWI76_RS20150 -1.3 -1.4 NADH:ubiquinone oxidoreductase subunit J compare
BWI76_RS10465 -1.3 -2.1 hypothetical protein compare
BWI76_RS11285 -1.3 -1.4 transcriptional regulator compare
BWI76_RS16525 -1.3 -3.0 cyclopropane-fatty-acyl-phospholipid synthase compare
BWI76_RS24595 -1.2 -2.0 dihydroxyacetone kinase subunit DhaK compare
BWI76_RS01385 -1.2 -1.4 potassium transporter compare
BWI76_RS11980 -1.2 -1.1 DeoR family transcriptional regulator compare
BWI76_RS21375 -1.2 -0.7 autonomous glycyl radical cofactor GrcA compare
BWI76_RS12860 -1.2 -1.2 hypothetical protein compare
BWI76_RS20140 -1.2 -2.3 NADH-quinone oxidoreductase subunit L compare
BWI76_RS17720 -1.2 -0.3 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS03995 -1.2 -4.2 hypothetical protein compare
BWI76_RS16370 -1.2 -3.5 electron transport complex subunit D compare
BWI76_RS27440 -1.2 -1.3 DNA helicase RecG compare
BWI76_RS01200 -1.2 -0.8 diaminopimelate epimerase compare
BWI76_RS23490 -1.2 -3.6 fimbrial protein compare
BWI76_RS10990 -1.2 -2.0 dihydroorotase compare
BWI76_RS26175 -1.2 -3.5 DeoR/GlpR family transcriptional regulator compare
BWI76_RS12460 -1.2 -1.2 envelope stress response membrane protein PspC compare
BWI76_RS01870 -1.2 -3.0 diacylglycerol kinase compare
BWI76_RS10415 -1.2 -2.9 endoribonuclease L-PSP compare
BWI76_RS02610 -1.2 -4.2 transcriptional regulator compare
BWI76_RS17190 -1.2 -0.9 TonB system transport protein TonB compare
BWI76_RS04305 -1.2 -0.8 molecular chaperone DnaJ compare
BWI76_RS13150 -1.2 -1.6 carnitine operon protein CaiE compare
BWI76_RS12270 -1.2 -1.8 hypothetical protein compare
BWI76_RS20180 -1.2 -2.8 NADH-quinone oxidoreductase subunit C/D compare
BWI76_RS26670 -1.2 -4.9 two-component sensor histidine kinase compare
BWI76_RS15215 -1.2 -0.6 N-acetyltransferase compare
BWI76_RS12125 -1.1 -2.1 hypothetical protein compare
BWI76_RS04815 -1.1 -1.5 cell division protein ZapD compare
BWI76_RS26890 -1.1 -1.1 hypothetical protein compare
BWI76_RS05120 -1.1 -4.5 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS13915 -1.1 -4.1 magnesium transport protein MgtC compare
BWI76_RS21165 -1.1 -1.0 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS26470 -1.1 -2.1 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS00600 -1.1 -2.1 LacI family transcriptional regulator compare
BWI76_RS22475 -1.1 -2.5 heme ABC transporter ATP-binding protein compare
BWI76_RS06525 -1.1 -2.3 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS13920 -1.1 -4.6 magnesium-translocating P-type ATPase compare
BWI76_RS15650 -1.1 -3.3 gp5 compare
BWI76_RS14755 -1.1 -1.9 SIS domain-containing protein compare
BWI76_RS21580 -1.1 -0.9 SsrA-binding protein compare
BWI76_RS08535 -1.1 -0.7 translocation protein TolB compare
BWI76_RS08605 -1.1 -1.0 phosphoglyceromutase compare
BWI76_RS12400 -1.1 -4.0 TetR family transcriptional regulator compare
BWI76_RS12380 -1.1 -2.7 DNA polymerase V subunit UmuD compare
BWI76_RS07115 -1.1 -3.7 hypothetical protein compare
BWI76_RS11435 -1.1 -1.0 hypothetical protein compare
BWI76_RS23830 -1.1 -3.5 hypothetical protein compare
BWI76_RS24910 -1.1 -3.6 rRNA (cytidine-2'-O-)-methyltransferase compare
BWI76_RS06405 -1.1 -1.2 2-dehydropantoate 2-reductase compare
BWI76_RS04705 -1.1 -3.0 DNA-binding transcriptional regulator FruR compare
BWI76_RS12215 -1.1 -3.0 HNH endonuclease compare
BWI76_RS08425 -1.1 -2.1 succinyl-CoA ligase subunit beta compare
BWI76_RS13770 -1.1 -2.0 alkylhydroperoxidase domain protein compare
BWI76_RS07640 -1.1 -1.1 short chain dehydrogenase compare
BWI76_RS10245 -1.1 -1.2 aspartate aminotransferase compare
BWI76_RS21215 -1.0 -2.6 NAGC-like transcriptional regulator compare
BWI76_RS25205 -1.0 -1.7 hypothetical protein compare
BWI76_RS14375 -1.0 -1.9 hypothetical protein compare
BWI76_RS12750 -1.0 -2.3 hypothetical protein compare
BWI76_RS01135 -1.0 -2.6 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS07120 -1.0 -4.2 LacI family transcriptional regulator compare
BWI76_RS08395 -1.0 -1.1 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS09735 -1.0 -2.0 formate acetyltransferase compare
BWI76_RS12285 -1.0 -1.9 hypothetical protein compare
BWI76_RS14005 -1.0 -0.9 TetR family transcriptional regulator compare
BWI76_RS02320 -1.0 -1.4 divalent ion tolerance protein CutA compare
BWI76_RS10285 -1.0 -1.3 family 3 extracellular solute-binding protein compare
BWI76_RS27755 -1.0 -5.4 molecular chaperone TorD compare
BWI76_RS14615 -1.0 -1.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in mixed community experiments

For mixed community Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL across organisms